Wall clock time and date at job start Mon Mar 30 2020 04:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08994 * 109.47322 * 2 1 4 4 C 1.50703 * 109.47367 * 120.00293 * 2 1 3 5 5 H 1.07999 * 119.99901 * 119.99666 * 4 2 1 6 6 C 1.37873 * 119.99429 * 300.00193 * 4 2 1 7 7 N 1.31520 * 119.99972 * 179.97438 * 6 4 2 8 8 Si 1.86801 * 120.00436 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46907 * 90.00175 * 8 6 4 10 10 H 1.48496 * 109.47281 * 210.00170 * 8 6 4 11 11 H 1.48499 * 109.46954 * 330.00633 * 8 6 4 12 12 N 1.46502 * 109.47215 * 240.00113 * 2 1 3 13 13 C 1.46504 * 119.99986 * 300.00141 * 12 2 1 14 14 C 1.34773 * 120.00294 * 119.99735 * 12 2 1 15 15 O 1.21277 * 119.99834 * 0.02562 * 14 12 2 16 16 C 1.50699 * 120.00150 * 179.97438 * 14 12 2 17 17 H 1.08992 * 115.55314 * 325.00988 * 16 14 12 18 18 C 1.53008 * 117.49518 * 110.67525 * 16 14 12 19 19 H 1.08995 * 117.49702 * 214.97655 * 18 16 14 20 20 C 1.50700 * 117.49927 * 0.02562 * 18 16 14 21 21 O 1.20821 * 120.00390 * 119.89880 * 20 18 16 22 22 O 1.34233 * 119.99483 * 299.89808 * 20 18 16 23 23 C 1.53001 * 117.49821 * 179.33375 * 16 14 12 24 24 C 1.52998 * 117.50052 * 0.02562 * 23 16 14 25 25 C 1.53003 * 117.49782 * 145.00002 * 23 16 14 26 26 H 1.09004 * 109.47354 * 299.99645 * 1 2 3 27 27 H 1.09007 * 109.47444 * 60.00120 * 1 2 3 28 28 H 1.09005 * 109.47661 * 179.97438 * 1 2 3 29 29 H 0.96994 * 120.00476 * 179.97438 * 7 6 4 30 30 H 1.08998 * 109.46954 * 89.99753 * 13 12 2 31 31 H 1.08996 * 109.47220 * 209.99706 * 13 12 2 32 32 H 1.08996 * 109.46955 * 329.99886 * 13 12 2 33 33 H 0.96700 * 116.99276 * 180.02562 * 22 20 18 34 34 H 1.09004 * 109.47090 * 66.33859 * 24 23 16 35 35 H 1.09003 * 109.47473 * 186.33525 * 24 23 16 36 36 H 1.08998 * 109.47100 * 306.34149 * 24 23 16 37 37 H 1.09005 * 109.46967 * 60.00582 * 25 23 16 38 38 H 1.08997 * 109.46988 * 179.97438 * 25 23 16 39 39 H 1.08994 * 109.46876 * 300.00435 * 25 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2394 2.4826 7 7 2.1372 -0.8597 3.5565 8 14 0.6258 1.2797 2.6541 9 1 -0.8021 0.8743 2.6993 10 1 0.9770 1.9952 3.9070 11 1 0.8489 2.1772 1.4922 12 7 2.0183 -0.6906 -1.1962 13 6 1.6643 -2.0932 -1.4281 14 6 2.7931 -0.0356 -2.0834 15 8 3.0864 1.1253 -1.8912 16 6 3.2959 -0.7462 -3.3135 17 1 3.5336 -1.8018 -3.1826 18 6 2.7206 -0.3139 -4.6638 19 1 2.5803 -1.0850 -5.4212 20 6 1.6950 0.7903 -4.6618 21 8 1.9091 1.8149 -5.2653 22 8 0.5435 0.6355 -3.9894 23 6 4.1582 0.0562 -4.2900 24 6 4.4444 1.5185 -3.9426 25 6 5.2881 -0.6846 -5.0079 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.9031 -0.5281 4.4375 30 1 0.7375 -2.1443 -1.9994 31 1 2.4627 -2.5819 -1.9864 32 1 1.5294 -2.5969 -0.4709 33 1 -0.0836 1.3710 -4.0176 34 1 5.0642 1.5645 -3.0471 35 1 4.9687 1.9932 -4.7720 36 1 3.5044 2.0395 -3.7609 37 1 4.8706 -1.5014 -5.5966 38 1 5.8140 0.0060 -5.6671 39 1 5.9844 -1.0862 -4.2717 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000223544684.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:19 Heat of formation + Delta-G solvation = -89.129929 kcal Electronic energy + Delta-G solvation = -22110.556590 eV Core-core repulsion = 18826.843374 eV Total energy + Delta-G solvation = -3283.713216 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.94070 -39.20166 -37.32040 -35.93643 -35.33982 -32.77779 -30.66867 -29.55607 -27.41454 -26.20872 -25.61811 -25.08144 -22.80846 -20.61229 -19.14507 -18.29843 -17.74999 -17.23040 -16.63741 -15.97123 -15.80271 -15.21085 -14.68040 -14.16300 -13.82062 -13.69219 -13.55388 -12.91479 -12.81760 -12.65738 -12.40099 -12.25407 -12.17160 -12.00579 -11.83914 -11.52331 -11.40731 -11.22954 -11.13772 -10.72150 -10.51923 -10.18285 -10.15895 -9.85993 -9.64355 -9.34181 -8.90115 -8.64808 -7.71478 -6.16392 -4.16980 2.21810 2.80359 3.00465 3.22236 3.35904 3.38341 3.60163 3.85558 4.33785 4.46644 4.62373 4.72667 5.01804 5.13252 5.20264 5.34519 5.46900 5.55750 5.65842 5.76458 5.89647 5.98645 6.02645 6.14274 6.25254 6.27491 6.29106 6.38108 6.49544 6.51926 6.75070 6.83899 7.12426 7.35926 7.61935 7.96128 8.17416 8.45999 8.82351 8.90033 9.44811 10.96290 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.025323 B = 0.006210 C = 0.005839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.434177 B = 4507.440976 C = 4794.023920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.231 3.769 3 H 0.061 0.939 4 C -0.528 4.528 5 H 0.079 0.921 6 C 0.076 3.924 7 N -0.895 5.895 8 Si 0.884 3.116 9 H -0.277 1.277 10 H -0.294 1.294 11 H -0.264 1.264 12 N -0.574 5.574 13 C 0.082 3.918 14 C 0.535 3.465 15 O -0.546 6.546 16 C -0.160 4.160 17 H 0.134 0.866 18 C -0.139 4.139 19 H 0.147 0.853 20 C 0.515 3.485 21 O -0.507 6.507 22 O -0.505 6.505 23 C -0.061 4.061 24 C -0.110 4.110 25 C -0.116 4.116 26 H 0.048 0.952 27 H 0.034 0.966 28 H 0.055 0.945 29 H 0.266 0.734 30 H 0.047 0.953 31 H 0.056 0.944 32 H 0.084 0.916 33 H 0.409 0.591 34 H 0.070 0.930 35 H 0.050 0.950 36 H 0.076 0.924 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.125 -2.377 -16.686 16.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.129 3.871 3 H 0.079 0.921 4 C -0.566 4.566 5 H 0.097 0.903 6 C -0.127 4.127 7 N -0.533 5.533 8 Si 0.714 3.286 9 H -0.204 1.204 10 H -0.222 1.222 11 H -0.189 1.189 12 N -0.304 5.304 13 C -0.061 4.061 14 C 0.321 3.679 15 O -0.425 6.425 16 C -0.182 4.182 17 H 0.151 0.849 18 C -0.158 4.158 19 H 0.165 0.835 20 C 0.357 3.643 21 O -0.395 6.395 22 O -0.316 6.316 23 C -0.062 4.062 24 C -0.167 4.167 25 C -0.172 4.172 26 H 0.066 0.934 27 H 0.053 0.947 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.103 0.897 33 H 0.267 0.733 34 H 0.089 0.911 35 H 0.069 0.931 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.346 -1.827 -16.490 16.595 hybrid contribution -1.206 0.876 0.310 1.522 sum -0.860 -0.951 -16.181 16.232 Atomic orbital electron populations 1.22417 0.98987 1.01091 0.99107 1.19267 0.90031 0.95103 0.82661 0.92124 1.21167 1.32686 1.14265 0.88508 0.90301 1.24858 0.95655 0.96564 0.95628 1.69871 1.45227 1.40187 0.97975 0.86909 0.80424 0.83854 0.77446 1.20411 1.22167 1.18878 1.47726 1.48405 1.11819 1.22405 1.21685 0.99099 0.82709 1.02649 1.19252 0.78957 0.86468 0.83229 1.90668 1.58450 1.16847 1.76514 1.22712 1.04255 1.01715 0.89478 0.84872 1.22074 0.93977 0.99456 1.00272 0.83519 1.22166 0.80846 0.86888 0.74422 1.90692 1.77738 1.29137 1.41969 1.84571 1.29099 1.49379 1.68547 1.21719 0.88932 0.97886 0.97649 1.21487 1.03762 0.90920 1.00529 1.21415 0.96422 0.99549 0.99864 0.93374 0.94722 0.92614 0.92427 0.93440 0.92564 0.89735 0.73257 0.91132 0.93134 0.90566 0.92039 0.91308 0.91115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.37 8.67 37.15 0.32 -3.05 16 2 C 0.23 5.51 2.23 -69.08 -0.15 5.36 16 3 H 0.06 1.62 5.96 -51.93 -0.31 1.31 16 4 C -0.53 -14.44 8.57 -34.44 -0.30 -14.73 16 5 H 0.08 2.31 7.58 -52.49 -0.40 1.91 16 6 C 0.08 2.15 5.45 -17.82 -0.10 2.05 16 7 N -0.90 -26.78 13.96 55.43 0.77 -26.01 16 8 Si 0.88 21.84 24.37 -169.99 -4.14 17.69 16 9 H -0.28 -6.54 6.87 56.52 0.39 -6.16 16 10 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 11 H -0.26 -6.47 6.53 56.52 0.37 -6.10 16 12 N -0.57 -11.56 2.75 -175.27 -0.48 -12.04 16 13 C 0.08 1.31 9.26 59.85 0.55 1.87 16 14 C 0.53 10.40 6.10 -10.99 -0.07 10.33 16 15 O -0.55 -12.43 12.31 5.56 0.07 -12.37 16 16 C -0.16 -2.29 4.99 -91.77 -0.46 -2.75 16 17 H 0.13 1.55 6.46 -51.93 -0.34 1.21 16 18 C -0.14 -1.75 5.89 -91.73 -0.54 -2.29 16 19 H 0.15 1.33 8.05 -51.93 -0.42 0.91 16 20 C 0.51 7.72 5.96 36.01 0.21 7.93 16 21 O -0.51 -8.74 16.16 -18.75 -0.30 -9.04 16 22 O -0.50 -6.92 12.91 -39.27 -0.51 -7.43 16 23 C -0.06 -0.81 2.70 -154.47 -0.42 -1.22 16 24 C -0.11 -1.74 7.49 37.16 0.28 -1.46 16 25 C -0.12 -1.08 9.85 37.16 0.37 -0.72 16 26 H 0.05 1.08 3.27 -51.93 -0.17 0.91 16 27 H 0.03 0.66 8.14 -51.92 -0.42 0.24 16 28 H 0.05 1.11 7.67 -51.93 -0.40 0.71 16 29 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.73 6.00 -51.93 -0.31 0.41 16 32 H 0.08 1.49 7.02 -51.93 -0.36 1.12 16 33 H 0.41 4.07 9.10 45.56 0.41 4.48 16 34 H 0.07 1.19 7.62 -51.93 -0.40 0.80 16 35 H 0.05 0.69 8.03 -51.93 -0.42 0.28 16 36 H 0.08 1.43 4.46 -51.93 -0.23 1.20 16 37 H 0.06 0.45 7.90 -51.93 -0.41 0.04 16 38 H 0.07 0.59 8.00 -51.93 -0.42 0.18 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 309.97 15.07 4.67 4.67 Total: -1.00 -34.21 309.97 -4.82 -39.04 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -4.61 Total: 4.16 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: -0.29 Total: 1.31 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: 0.29 Total: -38.05 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -0.74 Total: -28.83 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.14 Total: 17.69 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -34.21 -4.82 -39.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223544684.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.092 kcal (2) G-P(sol) polarization free energy of solvation -34.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds