Wall clock time and date at job start Mon Mar 30 2020 04:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08994 * 109.47322 * 2 1 4 4 C 1.50703 * 109.47367 * 120.00293 * 2 1 3 5 5 H 1.07999 * 119.99901 * 119.99666 * 4 2 1 6 6 C 1.37873 * 119.99429 * 300.00193 * 4 2 1 7 7 N 1.31520 * 119.99972 * 179.97438 * 6 4 2 8 8 Si 1.86801 * 120.00436 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46907 * 90.00175 * 8 6 4 10 10 H 1.48496 * 109.47281 * 210.00170 * 8 6 4 11 11 H 1.48499 * 109.46954 * 330.00633 * 8 6 4 12 12 N 1.46502 * 109.47215 * 240.00113 * 2 1 3 13 13 C 1.46504 * 119.99986 * 300.00141 * 12 2 1 14 14 C 1.34773 * 120.00294 * 119.99735 * 12 2 1 15 15 O 1.21277 * 119.99834 * 0.02562 * 14 12 2 16 16 C 1.50699 * 120.00150 * 179.97438 * 14 12 2 17 17 H 1.08992 * 115.55314 * 325.00988 * 16 14 12 18 18 C 1.53008 * 117.49518 * 110.67525 * 16 14 12 19 19 H 1.08995 * 117.49702 * 214.97655 * 18 16 14 20 20 C 1.50700 * 117.49927 * 0.02562 * 18 16 14 21 21 O 1.20821 * 120.00390 * 119.89880 * 20 18 16 22 22 O 1.34233 * 119.99483 * 299.89808 * 20 18 16 23 23 C 1.53001 * 117.49821 * 179.33375 * 16 14 12 24 24 C 1.52998 * 117.50052 * 0.02562 * 23 16 14 25 25 C 1.53003 * 117.49782 * 145.00002 * 23 16 14 26 26 H 1.09004 * 109.47354 * 299.99645 * 1 2 3 27 27 H 1.09007 * 109.47444 * 60.00120 * 1 2 3 28 28 H 1.09005 * 109.47661 * 179.97438 * 1 2 3 29 29 H 0.96994 * 120.00476 * 179.97438 * 7 6 4 30 30 H 1.08998 * 109.46954 * 89.99753 * 13 12 2 31 31 H 1.08996 * 109.47220 * 209.99706 * 13 12 2 32 32 H 1.08996 * 109.46955 * 329.99886 * 13 12 2 33 33 H 0.96700 * 116.99276 * 180.02562 * 22 20 18 34 34 H 1.09004 * 109.47090 * 66.33859 * 24 23 16 35 35 H 1.09003 * 109.47473 * 186.33525 * 24 23 16 36 36 H 1.08998 * 109.47100 * 306.34149 * 24 23 16 37 37 H 1.09005 * 109.46967 * 60.00582 * 25 23 16 38 38 H 1.08997 * 109.46988 * 179.97438 * 25 23 16 39 39 H 1.08994 * 109.46876 * 300.00435 * 25 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2394 2.4826 7 7 2.1372 -0.8597 3.5565 8 14 0.6258 1.2797 2.6541 9 1 -0.8021 0.8743 2.6993 10 1 0.9770 1.9952 3.9070 11 1 0.8489 2.1772 1.4922 12 7 2.0183 -0.6906 -1.1962 13 6 1.6643 -2.0932 -1.4281 14 6 2.7931 -0.0356 -2.0834 15 8 3.0864 1.1253 -1.8912 16 6 3.2959 -0.7462 -3.3135 17 1 3.5336 -1.8018 -3.1826 18 6 2.7206 -0.3139 -4.6638 19 1 2.5803 -1.0850 -5.4212 20 6 1.6950 0.7903 -4.6618 21 8 1.9091 1.8149 -5.2653 22 8 0.5435 0.6355 -3.9894 23 6 4.1582 0.0562 -4.2900 24 6 4.4444 1.5185 -3.9426 25 6 5.2881 -0.6846 -5.0079 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.9031 -0.5281 4.4375 30 1 0.7375 -2.1443 -1.9994 31 1 2.4627 -2.5819 -1.9864 32 1 1.5294 -2.5969 -0.4709 33 1 -0.0836 1.3710 -4.0176 34 1 5.0642 1.5645 -3.0471 35 1 4.9687 1.9932 -4.7720 36 1 3.5044 2.0395 -3.7609 37 1 4.8706 -1.5014 -5.5966 38 1 5.8140 0.0060 -5.6671 39 1 5.9844 -1.0862 -4.2717 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000223544684.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:19 Heat of formation + Delta-G solvation = -114.223309 kcal Electronic energy + Delta-G solvation = -22111.644721 eV Core-core repulsion = 18826.843374 eV Total energy + Delta-G solvation = -3284.801347 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.12339 -40.54988 -38.58048 -37.13450 -36.92374 -34.75820 -32.44508 -30.62898 -28.42023 -27.58879 -27.18912 -26.74637 -24.16571 -22.10301 -20.36944 -19.56146 -19.06983 -18.81905 -18.26438 -17.39093 -17.16492 -16.77623 -16.23331 -15.51288 -15.18477 -14.93530 -14.66314 -14.59782 -14.27346 -14.06153 -13.75094 -13.72315 -13.57017 -13.31866 -13.07134 -12.98609 -12.81167 -12.58417 -12.54325 -12.26045 -12.05230 -11.65631 -11.59195 -11.36094 -11.25379 -10.90345 -10.79882 -10.41709 -9.32991 -8.36197 -6.39872 1.09652 1.23737 1.33546 1.41662 1.53917 1.93689 2.25817 2.26632 2.65350 2.99534 3.39402 3.51645 3.66600 4.00572 4.13687 4.37930 4.42733 4.50510 4.56122 4.63367 4.65547 4.70327 4.84517 4.87226 4.96130 5.01984 5.06974 5.08404 5.13317 5.31972 5.32783 5.44749 5.50857 5.58744 5.75666 6.20371 6.62469 6.77690 6.91201 7.21808 7.41019 8.79771 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.025323 B = 0.006210 C = 0.005839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.434177 B = 4507.440976 C = 4794.023920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.235 3.765 3 H 0.026 0.974 4 C -0.524 4.524 5 H 0.048 0.952 6 C 0.024 3.976 7 N -0.939 5.939 8 Si 0.939 3.061 9 H -0.253 1.253 10 H -0.297 1.297 11 H -0.266 1.266 12 N -0.584 5.584 13 C 0.079 3.921 14 C 0.524 3.476 15 O -0.590 6.590 16 C -0.165 4.165 17 H 0.169 0.831 18 C -0.122 4.122 19 H 0.197 0.803 20 C 0.508 3.492 21 O -0.539 6.539 22 O -0.508 6.508 23 C -0.065 4.065 24 C -0.109 4.109 25 C -0.109 4.109 26 H 0.038 0.962 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.268 0.732 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.061 0.939 33 H 0.421 0.579 34 H 0.047 0.953 35 H 0.065 0.935 36 H 0.042 0.958 37 H 0.092 0.908 38 H 0.074 0.926 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.826 -3.749 -19.218 19.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.131 3.869 3 H 0.044 0.956 4 C -0.563 4.563 5 H 0.066 0.934 6 C -0.175 4.175 7 N -0.578 5.578 8 Si 0.767 3.233 9 H -0.179 1.179 10 H -0.224 1.224 11 H -0.191 1.191 12 N -0.313 5.313 13 C -0.063 4.063 14 C 0.313 3.687 15 O -0.472 6.472 16 C -0.186 4.186 17 H 0.186 0.814 18 C -0.141 4.141 19 H 0.213 0.787 20 C 0.351 3.649 21 O -0.429 6.429 22 O -0.321 6.321 23 C -0.065 4.065 24 C -0.166 4.166 25 C -0.166 4.166 26 H 0.056 0.944 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.110 0.890 32 H 0.080 0.920 33 H 0.282 0.718 34 H 0.066 0.934 35 H 0.084 0.916 36 H 0.061 0.939 37 H 0.111 0.889 38 H 0.093 0.907 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.381 -3.235 -19.043 19.320 hybrid contribution -0.935 1.324 1.093 1.955 sum -1.316 -1.911 -17.951 18.100 Atomic orbital electron populations 1.22263 0.96637 1.02192 0.99652 1.18887 0.91751 0.93176 0.83064 0.95601 1.21397 1.31577 1.13128 0.90183 0.93367 1.25608 0.97153 0.99327 0.95421 1.69993 1.47181 1.42097 0.98564 0.86006 0.80028 0.80346 0.76920 1.17879 1.22415 1.19091 1.47788 1.48702 1.13399 1.21379 1.21899 1.01765 0.80264 1.02344 1.20166 0.77931 0.86221 0.84430 1.90657 1.59719 1.19075 1.77754 1.22683 1.05491 1.02878 0.87537 0.81386 1.22400 0.92596 0.99252 0.99834 0.78668 1.22743 0.81306 0.87117 0.73727 1.90681 1.78354 1.30420 1.43435 1.84542 1.29232 1.50196 1.68122 1.21883 0.90829 0.96247 0.97583 1.21376 1.01699 0.93359 1.00137 1.21456 0.95054 1.00159 0.99946 0.94373 0.92513 0.91211 0.92288 0.90849 0.88970 0.92010 0.71785 0.93424 0.91607 0.93920 0.88888 0.90658 0.90785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.16 8.67 71.98 0.62 -5.53 16 2 C 0.23 11.23 2.23 44.24 0.10 11.33 16 3 H 0.03 1.43 5.96 -2.39 -0.01 1.41 16 4 C -0.52 -29.32 8.57 25.60 0.22 -29.10 16 5 H 0.05 2.92 7.58 -2.91 -0.02 2.90 16 6 C 0.02 1.36 5.45 84.65 0.46 1.82 16 7 N -0.94 -57.55 13.96 21.45 0.30 -57.25 16 8 Si 0.94 45.50 24.37 68.60 1.67 47.17 16 9 H -0.25 -11.23 6.87 99.48 0.68 -10.55 16 10 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 11 H -0.27 -12.85 6.53 99.48 0.65 -12.20 16 12 N -0.58 -22.94 2.75 -826.82 -2.28 -25.21 16 13 C 0.08 2.34 9.26 127.77 1.18 3.52 16 14 C 0.52 19.94 6.10 87.66 0.53 20.47 16 15 O -0.59 -27.56 12.31 -3.02 -0.04 -27.60 16 16 C -0.17 -4.19 4.99 -11.54 -0.06 -4.25 16 17 H 0.17 3.04 6.46 -2.39 -0.02 3.03 16 18 C -0.12 -2.62 5.89 -11.51 -0.07 -2.69 16 19 H 0.20 2.27 8.05 -2.39 -0.02 2.26 16 20 C 0.51 14.25 5.96 71.24 0.42 14.67 16 21 O -0.54 -18.15 16.16 21.98 0.36 -17.79 16 22 O -0.51 -12.96 12.91 -51.45 -0.66 -13.62 16 23 C -0.06 -1.53 2.70 -52.15 -0.14 -1.67 16 24 C -0.11 -3.42 7.49 71.98 0.54 -2.88 16 25 C -0.11 -1.58 9.85 71.98 0.71 -0.87 16 26 H 0.04 1.64 3.27 -2.39 -0.01 1.63 16 27 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 28 H 0.07 2.64 7.67 -2.38 -0.02 2.62 16 29 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 30 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.09 2.02 6.00 -2.39 -0.01 2.00 16 32 H 0.06 2.11 7.02 -2.39 -0.02 2.09 16 33 H 0.42 7.88 9.10 -74.06 -0.67 7.20 16 34 H 0.05 1.66 7.62 -2.38 -0.02 1.64 16 35 H 0.07 1.78 8.03 -2.39 -0.02 1.76 16 36 H 0.04 1.63 4.46 -2.39 -0.01 1.61 16 37 H 0.09 0.80 7.90 -2.38 -0.02 0.78 16 38 H 0.07 1.02 8.00 -2.39 -0.02 1.00 16 39 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -78.62 309.97 4.20 -74.42 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: 0.32 Total: 15.05 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: 4.53 Total: 4.83 kcal Atomic # 7 Polarization: -80.49 SS G_CDS: -1.98 Total: -82.46 kcal Atomic # 8 Polarization: -58.66 SS G_CDS: -0.35 Total: -59.01 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 1.67 Total: 47.17 kcal Total: -78.62 4.20 -74.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223544684.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.804 kcal (2) G-P(sol) polarization free energy of solvation -78.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds