Wall clock time and date at job start Mon Mar 30 2020 04:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46923 * 2 1 4 4 C 1.50700 * 109.46870 * 239.99876 * 2 1 3 5 5 H 1.07995 * 120.00479 * 239.99876 * 4 2 1 6 6 C 1.37886 * 119.99712 * 60.00142 * 4 2 1 7 7 N 1.31512 * 120.00197 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99854 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47177 * 89.99687 * 8 6 4 10 10 H 1.48494 * 109.47188 * 210.00047 * 8 6 4 11 11 H 1.48500 * 109.47304 * 330.00113 * 8 6 4 12 12 N 1.46493 * 109.47122 * 120.00311 * 2 1 3 13 13 C 1.46497 * 120.00342 * 59.99599 * 12 2 1 14 14 C 1.34779 * 119.99664 * 239.99709 * 12 2 1 15 15 O 1.21276 * 120.00054 * 0.02562 * 14 12 2 16 16 C 1.50701 * 119.99821 * 179.97438 * 14 12 2 17 17 H 1.08998 * 115.55457 * 325.67173 * 16 14 12 18 18 C 1.53083 * 117.53002 * 111.38545 * 16 14 12 19 19 H 1.09001 * 117.49242 * 214.95243 * 18 16 14 20 20 C 1.50701 * 117.51361 * 359.97438 * 18 16 14 21 21 O 1.20831 * 119.99510 * 314.93331 * 20 18 16 22 22 O 1.34221 * 119.99994 * 134.93579 * 20 18 16 23 23 C 1.53000 * 117.49766 * 179.97438 * 16 14 12 24 24 C 1.52997 * 117.49982 * 359.97438 * 23 16 14 25 25 C 1.53006 * 117.49396 * 144.97709 * 23 16 14 26 26 H 1.08997 * 109.47286 * 59.99933 * 1 2 3 27 27 H 1.08996 * 109.46923 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46877 * 299.99629 * 1 2 3 29 29 H 0.97000 * 120.00260 * 179.97438 * 7 6 4 30 30 H 1.09000 * 109.47675 * 270.00104 * 13 12 2 31 31 H 1.09001 * 109.46930 * 30.00102 * 13 12 2 32 32 H 1.09000 * 109.47094 * 149.99964 * 13 12 2 33 33 H 0.96702 * 116.99550 * 179.97438 * 22 20 18 34 34 H 1.08998 * 109.47060 * 196.05890 * 24 23 16 35 35 H 1.08999 * 109.47256 * 316.05235 * 24 23 16 36 36 H 1.09004 * 109.47108 * 76.05729 * 24 23 16 37 37 H 1.08997 * 109.47259 * 299.91168 * 25 23 16 38 38 H 1.08998 * 109.47192 * 59.91781 * 25 23 16 39 39 H 1.09007 * 109.46532 * 179.91710 * 25 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3223 -1.1195 -4.0080 9 1 1.3446 -2.1615 -4.4124 10 1 2.4871 -0.1402 -5.1120 11 1 3.6307 -1.7566 -3.7121 12 7 2.0184 -0.6906 1.1961 13 6 1.6644 -2.0932 1.4279 14 6 2.7933 -0.0356 2.0832 15 8 3.0859 1.1256 1.8915 16 6 3.2951 -0.7459 3.3140 17 1 2.6160 -1.4839 3.7408 18 6 4.7963 -1.0323 3.4029 19 1 5.1040 -1.9586 3.8882 20 6 5.6601 -0.5831 2.2527 21 8 5.3050 -0.7853 1.1156 22 8 6.8239 0.0417 2.4913 23 6 4.1710 0.0518 4.2822 24 6 4.4707 1.5094 3.9265 25 6 4.0256 -0.2467 5.7758 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 0.7086 1.1613 -3.4844 30 1 0.7376 -2.1444 1.9993 31 1 1.5295 -2.5968 0.4707 32 1 2.4629 -2.5819 1.9863 33 1 7.3436 0.3107 1.7215 34 1 5.3105 1.8639 4.5241 35 1 4.7221 1.5809 2.8683 36 1 3.5931 2.1218 4.1338 37 1 3.0000 -0.0493 6.0876 38 1 4.2672 -1.2930 5.9624 39 1 4.7062 0.3899 6.3414 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000223544740.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:21 Heat of formation + Delta-G solvation = -95.930526 kcal Electronic energy + Delta-G solvation = -22081.218009 eV Core-core repulsion = 18797.209897 eV Total energy + Delta-G solvation = -3284.008112 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.77185 -38.95961 -37.09056 -35.77436 -35.09225 -32.75443 -29.99005 -29.05006 -27.42631 -26.04931 -25.47996 -25.08466 -22.44540 -20.27488 -19.36995 -18.00983 -17.62387 -16.92140 -16.21251 -15.77274 -15.61207 -14.97348 -14.27812 -14.19366 -13.89928 -13.45625 -13.34101 -12.83271 -12.62630 -12.38415 -12.28976 -12.11685 -11.90853 -11.58744 -11.33477 -11.29397 -11.23265 -10.97527 -10.76074 -10.59583 -10.41027 -10.23327 -10.07842 -10.06974 -9.71193 -9.08378 -8.68292 -8.32910 -7.47237 -5.98190 -4.03924 2.46023 2.85374 3.29552 3.32339 3.38886 3.44511 3.76508 4.01683 4.46779 4.62669 4.76962 4.84025 5.05425 5.31116 5.34009 5.48757 5.52839 5.61498 5.75763 5.85808 5.89749 6.01487 6.09471 6.12094 6.25866 6.45973 6.71709 6.78063 6.81641 6.89327 7.13318 7.51151 7.62706 7.81925 8.11336 8.17395 8.30429 8.63288 8.94393 9.15849 9.61360 11.07445 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.023544 B = 0.006373 C = 0.005718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.988482 B = 4392.767661 C = 4895.696671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.261 3.739 3 H 0.062 0.938 4 C -0.515 4.515 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.892 5.892 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.580 5.580 13 C 0.085 3.915 14 C 0.537 3.463 15 O -0.547 6.547 16 C -0.153 4.153 17 H 0.130 0.870 18 C -0.136 4.136 19 H 0.144 0.856 20 C 0.500 3.500 21 O -0.477 6.477 22 O -0.516 6.516 23 C -0.071 4.071 24 C -0.114 4.114 25 C -0.115 4.115 26 H 0.093 0.907 27 H 0.029 0.971 28 H 0.010 0.990 29 H 0.261 0.739 30 H 0.041 0.959 31 H 0.080 0.920 32 H 0.052 0.948 33 H 0.408 0.592 34 H 0.051 0.949 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.248 -4.750 15.101 17.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.161 3.839 3 H 0.079 0.921 4 C -0.554 4.554 5 H 0.078 0.922 6 C -0.139 4.139 7 N -0.531 5.531 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.309 5.309 13 C -0.059 4.059 14 C 0.323 3.677 15 O -0.426 6.426 16 C -0.174 4.174 17 H 0.148 0.852 18 C -0.155 4.155 19 H 0.161 0.839 20 C 0.340 3.660 21 O -0.362 6.362 22 O -0.328 6.328 23 C -0.072 4.072 24 C -0.170 4.170 25 C -0.172 4.172 26 H 0.112 0.888 27 H 0.048 0.952 28 H 0.029 0.971 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.099 0.901 32 H 0.071 0.929 33 H 0.266 0.734 34 H 0.069 0.931 35 H 0.101 0.899 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.945 -4.209 14.818 16.511 hybrid contribution 0.571 -0.669 -1.454 1.700 sum 6.516 -4.878 13.363 15.647 Atomic orbital electron populations 1.22091 0.98296 0.99337 1.00716 1.18905 0.90595 0.94462 0.79987 0.92061 1.21333 1.31014 1.12861 0.90172 0.92153 1.24879 0.95101 0.95046 0.98896 1.69881 1.36849 1.22794 1.23546 0.86509 0.79253 0.79281 0.82462 1.20701 1.21194 1.19931 1.48049 1.48438 1.11367 1.23064 1.21574 0.98376 0.83579 1.02350 1.19170 0.79122 0.86493 0.82901 1.90603 1.58297 1.17033 1.76715 1.22759 0.91942 1.03552 0.99154 0.85177 1.21945 0.92480 1.02592 0.98475 0.83873 1.22135 0.79637 0.74693 0.89537 1.90912 1.70824 1.51050 1.23373 1.84477 1.33474 1.71026 1.43868 1.21702 0.98904 0.93961 0.92652 1.21532 1.00911 0.91200 1.03384 1.21405 1.02528 1.01633 0.91670 0.88844 0.95211 0.97119 0.92860 0.94079 0.90143 0.92904 0.73375 0.93060 0.89890 0.91617 0.91482 0.92132 0.91412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 8.97 37.16 0.33 -3.28 16 2 C 0.26 6.97 2.64 -69.08 -0.18 6.78 16 3 H 0.06 1.90 6.90 -51.93 -0.36 1.54 16 4 C -0.51 -14.67 7.99 -34.44 -0.28 -14.95 16 5 H 0.06 1.74 7.33 -52.49 -0.38 1.35 16 6 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -26.13 11.32 55.43 0.63 -25.50 16 8 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 12 N -0.58 -13.05 2.75 -175.27 -0.48 -13.53 16 13 C 0.09 1.53 9.00 59.85 0.54 2.07 16 14 C 0.54 11.50 5.54 -10.98 -0.06 11.44 16 15 O -0.55 -13.46 12.28 5.56 0.07 -13.39 16 16 C -0.15 -2.36 4.52 -91.73 -0.41 -2.78 16 17 H 0.13 1.62 7.26 -51.93 -0.38 1.24 16 18 C -0.14 -1.88 5.90 -91.75 -0.54 -2.42 16 19 H 0.14 1.46 8.05 -51.93 -0.42 1.04 16 20 C 0.50 8.40 5.73 36.01 0.21 8.61 16 21 O -0.48 -10.38 16.43 -18.75 -0.31 -10.69 16 22 O -0.52 -6.90 13.17 -39.23 -0.52 -7.42 16 23 C -0.07 -0.95 2.70 -154.53 -0.42 -1.36 16 24 C -0.11 -1.73 7.68 37.16 0.29 -1.44 16 25 C -0.12 -1.06 9.85 37.16 0.37 -0.70 16 26 H 0.09 2.53 6.07 -51.93 -0.32 2.22 16 27 H 0.03 0.68 7.67 -51.93 -0.40 0.28 16 28 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 1.55 7.02 -51.93 -0.36 1.18 16 32 H 0.05 0.80 6.64 -51.93 -0.34 0.45 16 33 H 0.41 4.01 9.10 45.56 0.41 4.42 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 1.56 4.68 -51.93 -0.24 1.32 16 36 H 0.06 1.03 8.07 -51.93 -0.42 0.61 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.45 7.90 -51.93 -0.41 0.04 16 39 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 LS Contribution 318.29 15.07 4.80 4.80 Total: -1.00 -35.19 318.29 -5.96 -41.14 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -4.86 Total: 3.89 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: -0.25 Total: 3.65 kcal Atomic # 7 Polarization: -39.17 SS G_CDS: 0.14 Total: -39.03 kcal Atomic # 8 Polarization: -30.74 SS G_CDS: -0.76 Total: -31.50 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -35.19 -5.96 -41.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223544740.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.788 kcal (2) G-P(sol) polarization free energy of solvation -35.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds