Wall clock time and date at job start Mon Mar 30 2020 04:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46923 * 2 1 4 4 C 1.50700 * 109.46870 * 239.99876 * 2 1 3 5 5 H 1.07995 * 120.00479 * 239.99876 * 4 2 1 6 6 C 1.37886 * 119.99712 * 60.00142 * 4 2 1 7 7 N 1.31512 * 120.00197 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99854 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47177 * 89.99687 * 8 6 4 10 10 H 1.48494 * 109.47188 * 210.00047 * 8 6 4 11 11 H 1.48500 * 109.47304 * 330.00113 * 8 6 4 12 12 N 1.46493 * 109.47122 * 120.00311 * 2 1 3 13 13 C 1.46497 * 120.00342 * 59.99599 * 12 2 1 14 14 C 1.34779 * 119.99664 * 239.99709 * 12 2 1 15 15 O 1.21276 * 120.00054 * 0.02562 * 14 12 2 16 16 C 1.50701 * 119.99821 * 179.97438 * 14 12 2 17 17 H 1.08998 * 115.55457 * 325.67173 * 16 14 12 18 18 C 1.53083 * 117.53002 * 111.38545 * 16 14 12 19 19 H 1.09001 * 117.49242 * 214.95243 * 18 16 14 20 20 C 1.50701 * 117.51361 * 359.97438 * 18 16 14 21 21 O 1.20831 * 119.99510 * 314.93331 * 20 18 16 22 22 O 1.34221 * 119.99994 * 134.93579 * 20 18 16 23 23 C 1.53000 * 117.49766 * 179.97438 * 16 14 12 24 24 C 1.52997 * 117.49982 * 359.97438 * 23 16 14 25 25 C 1.53006 * 117.49396 * 144.97709 * 23 16 14 26 26 H 1.08997 * 109.47286 * 59.99933 * 1 2 3 27 27 H 1.08996 * 109.46923 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46877 * 299.99629 * 1 2 3 29 29 H 0.97000 * 120.00260 * 179.97438 * 7 6 4 30 30 H 1.09000 * 109.47675 * 270.00104 * 13 12 2 31 31 H 1.09001 * 109.46930 * 30.00102 * 13 12 2 32 32 H 1.09000 * 109.47094 * 149.99964 * 13 12 2 33 33 H 0.96702 * 116.99550 * 179.97438 * 22 20 18 34 34 H 1.08998 * 109.47060 * 196.05890 * 24 23 16 35 35 H 1.08999 * 109.47256 * 316.05235 * 24 23 16 36 36 H 1.09004 * 109.47108 * 76.05729 * 24 23 16 37 37 H 1.08997 * 109.47259 * 299.91168 * 25 23 16 38 38 H 1.08998 * 109.47192 * 59.91781 * 25 23 16 39 39 H 1.09007 * 109.46532 * 179.91710 * 25 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3223 -1.1195 -4.0080 9 1 1.3446 -2.1615 -4.4124 10 1 2.4871 -0.1402 -5.1120 11 1 3.6307 -1.7566 -3.7121 12 7 2.0184 -0.6906 1.1961 13 6 1.6644 -2.0932 1.4279 14 6 2.7933 -0.0356 2.0832 15 8 3.0859 1.1256 1.8915 16 6 3.2951 -0.7459 3.3140 17 1 2.6160 -1.4839 3.7408 18 6 4.7963 -1.0323 3.4029 19 1 5.1040 -1.9586 3.8882 20 6 5.6601 -0.5831 2.2527 21 8 5.3050 -0.7853 1.1156 22 8 6.8239 0.0417 2.4913 23 6 4.1710 0.0518 4.2822 24 6 4.4707 1.5094 3.9265 25 6 4.0256 -0.2467 5.7758 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 0.7086 1.1613 -3.4844 30 1 0.7376 -2.1444 1.9993 31 1 1.5295 -2.5968 0.4707 32 1 2.4629 -2.5819 1.9863 33 1 7.3436 0.3107 1.7215 34 1 5.3105 1.8639 4.5241 35 1 4.7221 1.5809 2.8683 36 1 3.5931 2.1218 4.1338 37 1 3.0000 -0.0493 6.0876 38 1 4.2672 -1.2930 5.9624 39 1 4.7062 0.3899 6.3414 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000223544740.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:21 Heat of formation + Delta-G solvation = -121.091273 kcal Electronic energy + Delta-G solvation = -22082.309061 eV Core-core repulsion = 18797.209897 eV Total energy + Delta-G solvation = -3285.099164 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.07784 -40.43550 -38.47032 -37.07446 -36.87394 -34.78734 -31.67138 -30.39652 -28.41523 -27.54727 -27.33114 -26.76774 -23.96915 -21.88890 -20.62554 -19.47393 -18.90758 -18.57253 -18.09621 -17.27983 -17.02610 -16.69820 -15.92913 -15.82590 -15.18104 -14.74981 -14.45460 -14.38731 -14.06625 -13.83865 -13.68697 -13.53187 -13.25670 -13.07514 -12.99717 -12.82528 -12.74271 -12.54394 -12.50028 -12.31085 -12.20038 -12.09697 -11.72180 -11.27323 -11.19221 -10.82531 -10.57452 -10.25775 -9.25327 -8.15827 -6.30632 1.17381 1.35099 1.37749 1.47977 1.56566 2.04869 2.32912 2.48249 2.67395 3.11197 3.47406 3.57196 3.70015 4.06590 4.16308 4.43612 4.47809 4.63011 4.66964 4.73598 4.77345 4.87132 4.89176 4.99089 5.03063 5.06616 5.10206 5.12903 5.37374 5.46492 5.54039 5.61428 5.61878 5.69684 6.07176 6.17941 6.76651 6.90203 6.97571 7.33513 7.54368 8.88447 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.023544 B = 0.006373 C = 0.005718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.988482 B = 4392.767661 C = 4895.696671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.266 3.734 3 H 0.003 0.997 4 C -0.529 4.529 5 H 0.051 0.949 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.962 3.038 9 H -0.262 1.262 10 H -0.282 1.282 11 H -0.279 1.279 12 N -0.594 5.594 13 C 0.082 3.918 14 C 0.523 3.477 15 O -0.594 6.594 16 C -0.166 4.166 17 H 0.170 0.830 18 C -0.129 4.129 19 H 0.194 0.806 20 C 0.498 3.502 21 O -0.540 6.540 22 O -0.505 6.505 23 C -0.056 4.056 24 C -0.114 4.114 25 C -0.108 4.108 26 H 0.066 0.934 27 H 0.046 0.954 28 H 0.021 0.979 29 H 0.264 0.736 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.085 0.915 33 H 0.421 0.579 34 H 0.076 0.924 35 H 0.040 0.960 36 H 0.051 0.949 37 H 0.074 0.926 38 H 0.089 0.911 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.815 -7.124 17.558 20.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.164 3.836 3 H 0.021 0.979 4 C -0.568 4.568 5 H 0.069 0.931 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.787 3.213 9 H -0.187 1.187 10 H -0.208 1.208 11 H -0.204 1.204 12 N -0.323 5.323 13 C -0.060 4.060 14 C 0.312 3.688 15 O -0.476 6.476 16 C -0.187 4.187 17 H 0.188 0.812 18 C -0.147 4.147 19 H 0.211 0.789 20 C 0.341 3.659 21 O -0.429 6.429 22 O -0.317 6.317 23 C -0.057 4.057 24 C -0.171 4.171 25 C -0.165 4.165 26 H 0.085 0.915 27 H 0.065 0.935 28 H 0.040 0.960 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.282 0.718 34 H 0.094 0.906 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.092 0.908 38 H 0.108 0.892 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.527 -6.603 17.319 19.651 hybrid contribution 0.487 0.191 -2.204 2.265 sum 7.014 -6.412 15.115 17.854 Atomic orbital electron populations 1.21848 0.96953 1.00083 0.99907 1.18432 0.91516 0.91846 0.81789 0.97933 1.21523 1.31113 1.12738 0.91418 0.93078 1.25710 0.95229 0.95752 1.01896 1.70017 1.37602 1.23895 1.24297 0.85497 0.78639 0.78473 0.78645 1.18723 1.20773 1.20431 1.48065 1.48990 1.13130 1.22093 1.21796 1.01006 0.80891 1.02320 1.20229 0.77999 0.86305 0.84273 1.90589 1.59495 1.19401 1.78154 1.22775 0.93624 1.05180 0.97136 0.81239 1.22295 0.90417 1.04716 0.97310 0.78923 1.22876 0.80003 0.73392 0.89635 1.90896 1.72250 1.53799 1.26002 1.84444 1.32655 1.70076 1.44566 1.21878 0.96743 0.92144 0.94951 1.21450 1.01242 0.93302 1.01075 1.21460 1.03464 1.03819 0.87773 0.91488 0.93456 0.95996 0.92678 0.91093 0.91994 0.89677 0.71815 0.90551 0.94142 0.92989 0.90752 0.89188 0.90179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.57 8.97 71.98 0.65 -5.92 16 2 C 0.27 14.88 2.64 44.25 0.12 14.99 16 3 H 0.00 0.18 6.90 -2.39 -0.02 0.16 16 4 C -0.53 -31.22 7.99 25.60 0.20 -31.01 16 5 H 0.05 3.03 7.33 -2.91 -0.02 3.01 16 6 C 0.01 0.76 5.30 84.66 0.45 1.21 16 7 N -0.92 -55.65 11.32 21.45 0.24 -55.41 16 8 Si 0.96 46.12 29.54 68.60 2.03 48.15 16 9 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 10 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 11 H -0.28 -13.48 7.11 99.48 0.71 -12.78 16 12 N -0.59 -27.07 2.75 -826.82 -2.28 -29.35 16 13 C 0.08 2.81 9.00 127.77 1.15 3.96 16 14 C 0.52 22.69 5.54 87.66 0.49 23.18 16 15 O -0.59 -30.90 12.28 -3.02 -0.04 -30.93 16 16 C -0.17 -4.71 4.52 -11.51 -0.05 -4.77 16 17 H 0.17 3.39 7.26 -2.39 -0.02 3.37 16 18 C -0.13 -3.14 5.90 -11.53 -0.07 -3.21 16 19 H 0.19 2.77 8.05 -2.39 -0.02 2.75 16 20 C 0.50 16.39 5.73 71.24 0.41 16.80 16 21 O -0.54 -24.16 16.43 21.95 0.36 -23.80 16 22 O -0.50 -13.02 13.17 -51.33 -0.68 -13.70 16 23 C -0.06 -1.32 2.70 -52.20 -0.14 -1.46 16 24 C -0.11 -3.40 7.68 71.98 0.55 -2.84 16 25 C -0.11 -1.43 9.85 71.98 0.71 -0.72 16 26 H 0.07 3.76 6.07 -2.39 -0.01 3.74 16 27 H 0.05 2.17 7.67 -2.39 -0.02 2.15 16 28 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 30 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.06 2.34 7.02 -2.39 -0.02 2.32 16 32 H 0.08 2.32 6.64 -2.39 -0.02 2.31 16 33 H 0.42 8.24 9.10 -74.06 -0.67 7.56 16 34 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.04 1.57 4.68 -2.39 -0.01 1.55 16 36 H 0.05 1.66 8.07 -2.39 -0.02 1.64 16 37 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.09 0.72 7.90 -2.39 -0.02 0.70 16 39 H 0.08 0.91 8.09 -2.38 -0.02 0.89 16 Total: -1.00 -83.53 318.29 4.49 -79.04 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: 0.39 Total: 15.79 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: 4.46 Total: 10.21 kcal Atomic # 7 Polarization: -82.72 SS G_CDS: -2.03 Total: -84.76 kcal Atomic # 8 Polarization: -68.08 SS G_CDS: -0.35 Total: -68.43 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -83.53 4.49 -79.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223544740.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.056 kcal (2) G-P(sol) polarization free energy of solvation -83.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds