Wall clock time and date at job start Mon Mar 30 2020 05:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86806 * 120.00258 * 2 1 4 4 H 1.48503 * 109.46852 * 270.00429 * 3 2 1 5 5 H 1.48501 * 109.46586 * 29.99783 * 3 2 1 6 6 H 1.48495 * 109.47035 * 150.00049 * 3 2 1 7 7 C 1.38956 * 120.00264 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00420 * 179.97438 * 7 2 1 9 9 N 1.37100 * 119.99812 * 359.97438 * 7 2 1 10 10 C 1.34773 * 120.00290 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99680 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00196 * 180.02562 * 10 9 7 13 13 N 1.46905 * 109.47066 * 180.02562 * 12 10 9 14 14 C 1.46901 * 110.99870 * 180.02562 * 13 12 10 15 15 C 1.50697 * 109.46943 * 180.02562 * 14 13 12 16 16 O 1.21282 * 120.00396 * 359.97438 * 15 14 13 17 17 N 1.34776 * 119.99767 * 180.02562 * 15 14 13 18 18 C 1.46924 * 120.63303 * 359.70870 * 17 15 14 19 19 C 1.53628 * 108.53841 * 126.37196 * 18 17 15 20 20 C 1.53043 * 109.24129 * 54.86046 * 19 18 17 21 21 C 1.53032 * 109.53721 * 298.50781 * 20 19 18 22 22 C 1.46932 * 120.63097 * 179.97438 * 17 15 14 23 23 H 0.96997 * 120.00444 * 359.97438 * 1 2 3 24 24 H 0.97009 * 120.00081 * 0.02562 * 9 7 2 25 25 H 1.09001 * 109.47558 * 60.00201 * 12 10 9 26 26 H 1.08998 * 109.47216 * 299.99863 * 12 10 9 27 27 H 1.00901 * 110.99869 * 56.04737 * 13 12 10 28 28 H 1.09004 * 109.47031 * 299.99620 * 14 13 12 29 29 H 1.08995 * 109.47111 * 59.99900 * 14 13 12 30 30 H 1.08998 * 109.59257 * 246.20530 * 18 17 15 31 31 H 1.09003 * 109.58546 * 6.64000 * 18 17 15 32 32 H 1.08997 * 109.63784 * 294.86864 * 19 18 17 33 33 H 1.09001 * 109.45642 * 174.74432 * 19 18 17 34 34 H 1.08996 * 109.45771 * 178.48361 * 20 19 18 35 35 H 1.09001 * 109.45875 * 58.52921 * 20 19 18 36 36 H 1.09000 * 109.49933 * 301.41206 * 21 20 19 37 37 H 1.08998 * 109.49673 * 181.31830 * 21 20 19 38 38 H 1.08997 * 109.58349 * 353.37075 * 22 17 15 39 39 H 1.08997 * 109.58823 * 113.78862 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6526 0.7000 6 1 3.5457 1.4401 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3234 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2102 -3.5579 -0.0001 12 6 1.2437 -4.8630 -0.0011 13 7 2.1984 -5.9795 -0.0004 14 6 1.4981 -7.2709 -0.0015 15 6 2.5076 -8.3898 -0.0001 16 8 3.6936 -8.1365 0.0012 17 7 2.0923 -9.6720 -0.0013 18 6 0.6590 -9.9947 0.0023 19 6 0.3687 -10.9424 -1.1715 20 6 1.2875 -12.1624 -1.0738 21 6 2.7472 -11.7126 -1.1681 22 6 3.0645 -10.7737 -0.0005 23 1 -0.4851 0.8400 0.0004 24 1 0.3533 -2.3907 -0.0005 25 1 0.6174 -4.9206 -0.8914 26 1 0.6168 -4.9209 0.8886 27 1 2.8326 -5.9125 0.7815 28 1 0.8722 -7.3456 0.8878 29 1 0.8742 -7.3450 -0.8922 30 1 0.3962 -10.4810 0.9418 31 1 0.0781 -9.0796 -0.1129 32 1 0.5500 -10.4250 -2.1135 33 1 -0.6713 -11.2658 -1.1283 34 1 1.0659 -12.8501 -1.8899 35 1 1.1233 -12.6653 -0.1208 36 1 2.9061 -11.1879 -2.1102 37 1 3.4002 -12.5841 -1.1220 38 1 4.0712 -10.3726 -0.1175 39 1 2.9944 -11.3222 0.9387 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228814417.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:57 Heat of formation + Delta-G solvation = -73.463917 kcal Electronic energy + Delta-G solvation = -20209.171070 eV Core-core repulsion = 16958.429934 eV Total energy + Delta-G solvation = -3250.741136 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.26847 -38.25533 -37.49128 -35.04518 -33.77862 -33.12278 -31.49702 -31.17998 -28.59874 -25.98984 -24.90614 -23.72224 -22.99754 -21.05180 -19.46192 -18.99485 -17.92126 -17.21288 -16.50023 -15.92674 -15.57749 -15.05603 -14.85814 -14.55009 -14.36973 -14.14905 -13.97252 -13.61325 -13.45417 -13.27310 -12.82103 -12.59759 -12.41980 -11.85242 -11.60946 -11.52865 -11.46822 -11.29542 -11.03232 -11.00825 -10.89476 -10.36305 -10.18642 -9.75054 -9.47491 -8.81152 -8.42458 -8.04985 -7.92519 -6.38685 -3.79099 2.63239 2.77484 3.20904 3.29137 3.35705 3.94214 4.10434 4.27816 4.41767 4.46014 4.52353 4.68908 4.77965 4.94906 5.07456 5.10916 5.18452 5.24096 5.30121 5.35524 5.42040 5.46117 5.52485 5.60598 5.70203 5.75249 5.78754 5.95578 5.97753 6.26038 6.34530 7.05798 7.30058 7.58807 7.66227 8.09936 8.19223 8.65133 9.21615 9.57548 10.09713 10.79255 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.052594 B = 0.002934 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.248644 B = 9542.128069 C = 9926.713355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.298 4.298 8 H 0.103 0.897 9 N -0.565 5.565 10 C 0.441 3.559 11 O -0.577 6.577 12 C 0.052 3.948 13 N -0.654 5.654 14 C 0.043 3.957 15 C 0.515 3.485 16 O -0.517 6.517 17 N -0.620 5.620 18 C 0.106 3.894 19 C -0.137 4.137 20 C -0.120 4.120 21 C -0.135 4.135 22 C 0.111 3.889 23 H 0.271 0.729 24 H 0.392 0.608 25 H 0.088 0.912 26 H 0.045 0.955 27 H 0.359 0.641 28 H 0.055 0.945 29 H 0.100 0.900 30 H 0.069 0.931 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.093 0.907 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.907 -23.573 -0.013 24.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.427 4.427 8 H 0.121 0.879 9 N -0.202 5.202 10 C 0.226 3.774 11 O -0.461 6.461 12 C -0.081 4.081 13 N -0.288 5.288 14 C -0.089 4.089 15 C 0.302 3.698 16 O -0.390 6.390 17 N -0.356 5.356 18 C -0.017 4.017 19 C -0.175 4.175 20 C -0.157 4.157 21 C -0.174 4.174 22 C -0.011 4.011 23 H 0.081 0.919 24 H 0.225 0.775 25 H 0.106 0.894 26 H 0.063 0.937 27 H 0.180 0.820 28 H 0.073 0.927 29 H 0.118 0.882 30 H 0.087 0.913 31 H 0.105 0.895 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.111 0.889 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.457 -23.225 -0.676 23.490 hybrid contribution -0.791 0.708 0.827 1.346 sum -4.248 -22.517 0.151 22.914 Atomic orbital electron populations 1.69607 1.05928 1.28105 1.50871 1.25253 0.95637 0.99691 0.97397 0.85855 0.79238 0.80784 0.78407 1.20393 1.20967 1.19407 1.19718 0.93412 0.82214 1.47383 0.87903 1.41845 1.09153 1.04535 1.64650 1.19749 0.88414 0.84645 0.84555 1.90558 1.13700 1.86945 1.54884 1.21701 0.94201 0.90928 1.01277 1.59776 1.18097 0.98360 1.52584 1.21842 0.95059 0.89623 1.02412 1.20702 0.90143 0.83135 0.75795 1.90736 1.17558 1.82960 1.47793 1.48134 1.06975 1.05591 1.74925 1.21841 0.81106 1.00049 0.98691 1.22008 0.99870 0.96627 0.99004 1.21511 0.94780 0.97331 1.02107 1.21911 0.96835 0.99331 0.99280 1.21536 0.94198 0.87475 0.97904 0.91921 0.77478 0.89421 0.93714 0.81972 0.92683 0.88207 0.91292 0.89492 0.91218 0.90667 0.91711 0.91809 0.91395 0.90822 0.88905 0.91793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.80 13.05 55.50 0.72 -24.08 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.41 29.55 -169.99 -5.02 16.39 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.30 -8.48 9.68 -14.93 -0.14 -8.62 16 8 H 0.10 3.09 7.16 -52.49 -0.38 2.71 16 9 N -0.56 -14.58 5.29 -10.96 -0.06 -14.64 16 10 C 0.44 10.79 7.82 -10.99 -0.09 10.70 16 11 O -0.58 -16.53 15.78 5.54 0.09 -16.45 16 12 C 0.05 0.93 6.17 -4.97 -0.03 0.90 16 13 N -0.65 -11.72 5.75 -116.34 -0.67 -12.39 16 14 C 0.04 0.56 4.51 -4.98 -0.02 0.54 16 15 C 0.51 7.29 7.74 -10.99 -0.08 7.21 16 16 O -0.52 -9.71 15.62 5.56 0.09 -9.63 16 17 N -0.62 -6.46 2.97 -172.53 -0.51 -6.98 16 18 C 0.11 0.74 6.37 -3.48 -0.02 0.72 16 19 C -0.14 -0.82 6.10 -26.38 -0.16 -0.98 16 20 C -0.12 -0.70 5.88 -26.69 -0.16 -0.86 16 21 C -0.14 -0.99 6.08 -26.64 -0.16 -1.15 16 22 C 0.11 1.05 6.43 -3.73 -0.02 1.02 16 23 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 24 H 0.39 9.55 7.90 -40.82 -0.32 9.23 16 25 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 26 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.36 7.03 8.13 -39.29 -0.32 6.71 16 28 H 0.06 0.58 7.93 -51.93 -0.41 0.16 16 29 H 0.10 1.10 7.70 -51.93 -0.40 0.70 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 0.53 5.93 -51.93 -0.31 0.23 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.09 1.07 7.00 -51.93 -0.36 0.71 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 323.08 15.07 4.87 4.87 Total: -1.00 -34.86 323.08 -7.35 -42.21 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -5.86 Total: 10.74 kcal Atomic # 6 Polarization: 10.95 SS G_CDS: -0.99 Total: 9.96 kcal Atomic # 7 Polarization: -57.57 SS G_CDS: -0.51 Total: -58.08 kcal Atomic # 8 Polarization: -26.25 SS G_CDS: 0.17 Total: -26.07 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.86 -7.35 -42.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228814417.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.257 kcal (2) G-P(sol) polarization free energy of solvation -34.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds