Wall clock time and date at job start Mon Mar 30 2020 05:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86806 * 120.00258 * 2 1 4 4 H 1.48503 * 109.46852 * 270.00429 * 3 2 1 5 5 H 1.48501 * 109.46586 * 29.99783 * 3 2 1 6 6 H 1.48495 * 109.47035 * 150.00049 * 3 2 1 7 7 C 1.38956 * 120.00264 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00420 * 179.97438 * 7 2 1 9 9 N 1.37100 * 119.99812 * 359.97438 * 7 2 1 10 10 C 1.34773 * 120.00290 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99680 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00196 * 180.02562 * 10 9 7 13 13 N 1.46905 * 109.47066 * 180.02562 * 12 10 9 14 14 C 1.46901 * 110.99870 * 180.02562 * 13 12 10 15 15 C 1.50697 * 109.46943 * 180.02562 * 14 13 12 16 16 O 1.21282 * 120.00396 * 359.97438 * 15 14 13 17 17 N 1.34776 * 119.99767 * 180.02562 * 15 14 13 18 18 C 1.46924 * 120.63303 * 359.70870 * 17 15 14 19 19 C 1.53628 * 108.53841 * 126.37196 * 18 17 15 20 20 C 1.53043 * 109.24129 * 54.86046 * 19 18 17 21 21 C 1.53032 * 109.53721 * 298.50781 * 20 19 18 22 22 C 1.46932 * 120.63097 * 179.97438 * 17 15 14 23 23 H 0.96997 * 120.00444 * 359.97438 * 1 2 3 24 24 H 0.97009 * 120.00081 * 0.02562 * 9 7 2 25 25 H 1.09001 * 109.47558 * 60.00201 * 12 10 9 26 26 H 1.08998 * 109.47216 * 299.99863 * 12 10 9 27 27 H 1.00901 * 110.99869 * 56.04737 * 13 12 10 28 28 H 1.09004 * 109.47031 * 299.99620 * 14 13 12 29 29 H 1.08995 * 109.47111 * 59.99900 * 14 13 12 30 30 H 1.08998 * 109.59257 * 246.20530 * 18 17 15 31 31 H 1.09003 * 109.58546 * 6.64000 * 18 17 15 32 32 H 1.08997 * 109.63784 * 294.86864 * 19 18 17 33 33 H 1.09001 * 109.45642 * 174.74432 * 19 18 17 34 34 H 1.08996 * 109.45771 * 178.48361 * 20 19 18 35 35 H 1.09001 * 109.45875 * 58.52921 * 20 19 18 36 36 H 1.09000 * 109.49933 * 301.41206 * 21 20 19 37 37 H 1.08998 * 109.49673 * 181.31830 * 21 20 19 38 38 H 1.08997 * 109.58349 * 353.37075 * 22 17 15 39 39 H 1.08997 * 109.58823 * 113.78862 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6526 0.7000 6 1 3.5457 1.4401 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3234 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2102 -3.5579 -0.0001 12 6 1.2437 -4.8630 -0.0011 13 7 2.1984 -5.9795 -0.0004 14 6 1.4981 -7.2709 -0.0015 15 6 2.5076 -8.3898 -0.0001 16 8 3.6936 -8.1365 0.0012 17 7 2.0923 -9.6720 -0.0013 18 6 0.6590 -9.9947 0.0023 19 6 0.3687 -10.9424 -1.1715 20 6 1.2875 -12.1624 -1.0738 21 6 2.7472 -11.7126 -1.1681 22 6 3.0645 -10.7737 -0.0005 23 1 -0.4851 0.8400 0.0004 24 1 0.3533 -2.3907 -0.0005 25 1 0.6174 -4.9206 -0.8914 26 1 0.6168 -4.9209 0.8886 27 1 2.8326 -5.9125 0.7815 28 1 0.8722 -7.3456 0.8878 29 1 0.8742 -7.3450 -0.8922 30 1 0.3962 -10.4810 0.9418 31 1 0.0781 -9.0796 -0.1129 32 1 0.5500 -10.4250 -2.1135 33 1 -0.6713 -11.2658 -1.1283 34 1 1.0659 -12.8501 -1.8899 35 1 1.1233 -12.6653 -0.1208 36 1 2.9061 -11.1879 -2.1102 37 1 3.4002 -12.5841 -1.1220 38 1 4.0712 -10.3726 -0.1175 39 1 2.9944 -11.3222 0.9387 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000228814417.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:56 Heat of formation + Delta-G solvation = -100.753189 kcal Electronic energy + Delta-G solvation = -20210.354421 eV Core-core repulsion = 16958.429934 eV Total energy + Delta-G solvation = -3251.924488 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.20773 -40.11377 -38.40124 -36.50693 -35.75278 -33.90552 -33.27173 -32.12506 -29.89093 -27.41703 -26.10390 -24.91465 -23.85070 -21.76863 -21.18404 -20.06126 -19.81838 -18.32313 -17.86965 -17.27305 -16.74409 -16.42468 -16.13719 -15.90837 -15.40781 -15.27089 -15.11142 -14.69516 -14.68596 -14.31336 -14.04891 -13.88038 -13.49163 -13.21287 -13.10548 -13.03960 -12.77097 -12.42394 -12.18904 -12.12172 -11.85033 -11.59489 -11.51798 -11.47444 -10.85375 -10.34642 -10.01803 -9.64831 -9.36192 -8.47110 -5.95591 1.37851 1.41588 1.54372 1.59645 1.90814 2.04910 2.30261 2.94807 3.20093 3.48621 3.55225 3.87978 3.99646 4.03538 4.16264 4.26080 4.29210 4.37943 4.39818 4.49452 4.55370 4.60495 4.64270 4.84953 4.92736 4.95363 5.08107 5.17806 5.24653 5.40859 5.47017 5.57497 5.81708 6.04795 6.19705 6.42120 6.60690 7.12824 7.19122 7.55817 8.12663 8.70308 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.052594 B = 0.002934 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.248644 B = 9542.128069 C = 9926.713355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.011 4.011 3 Si 0.992 3.008 4 H -0.271 1.271 5 H -0.268 1.268 6 H -0.275 1.275 7 C -0.336 4.336 8 H 0.075 0.925 9 N -0.570 5.570 10 C 0.434 3.566 11 O -0.627 6.627 12 C 0.068 3.932 13 N -0.682 5.682 14 C 0.047 3.953 15 C 0.507 3.493 16 O -0.579 6.579 17 N -0.612 5.612 18 C 0.098 3.902 19 C -0.135 4.135 20 C -0.118 4.118 21 C -0.130 4.130 22 C 0.106 3.894 23 H 0.279 0.721 24 H 0.399 0.601 25 H 0.115 0.885 26 H 0.079 0.921 27 H 0.345 0.655 28 H 0.091 0.909 29 H 0.125 0.875 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.056 0.944 33 H 0.099 0.901 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.049 0.951 37 H 0.087 0.913 38 H 0.061 0.939 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.416 -24.753 0.140 25.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.211 4.211 3 Si 0.815 3.185 4 H -0.196 1.196 5 H -0.192 1.192 6 H -0.200 1.200 7 C -0.465 4.465 8 H 0.093 0.907 9 N -0.208 5.208 10 C 0.221 3.779 11 O -0.514 6.514 12 C -0.064 4.064 13 N -0.315 5.315 14 C -0.084 4.084 15 C 0.296 3.704 16 O -0.458 6.458 17 N -0.346 5.346 18 C -0.024 4.024 19 C -0.173 4.173 20 C -0.155 4.155 21 C -0.169 4.169 22 C -0.017 4.017 23 H 0.088 0.912 24 H 0.233 0.767 25 H 0.133 0.867 26 H 0.096 0.904 27 H 0.163 0.837 28 H 0.109 0.891 29 H 0.143 0.857 30 H 0.107 0.893 31 H 0.118 0.882 32 H 0.075 0.925 33 H 0.117 0.883 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.068 0.932 37 H 0.106 0.894 38 H 0.080 0.920 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.058 -24.461 -0.534 25.205 hybrid contribution -0.040 0.966 0.782 1.244 sum -6.099 -23.494 0.248 24.274 Atomic orbital electron populations 1.69653 1.06694 1.29350 1.50207 1.26007 0.96578 1.02267 0.96207 0.84951 0.77871 0.76973 0.78674 1.19646 1.19226 1.20024 1.19646 0.92636 0.84161 1.50093 0.90699 1.41886 1.09364 1.04517 1.65033 1.20943 0.88237 0.86376 0.82296 1.90525 1.16277 1.87977 1.56598 1.21572 0.93524 0.87231 1.04029 1.59713 1.18957 1.00392 1.52461 1.21956 0.94672 0.86674 1.05101 1.21036 0.89532 0.84594 0.75285 1.90713 1.19952 1.84029 1.51088 1.48245 1.08879 1.04575 1.72888 1.22195 0.78707 1.01272 1.00213 1.22014 1.01236 0.96206 0.97808 1.21524 0.93198 0.97559 1.03222 1.21878 0.98700 0.99036 0.97242 1.21641 0.92705 0.87529 0.99788 0.91200 0.76705 0.86732 0.90358 0.83653 0.89145 0.85717 0.89276 0.88167 0.92505 0.88283 0.90713 0.90538 0.93239 0.89426 0.92011 0.89971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.62 13.05 21.66 0.28 -49.34 16 2 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 3 Si 0.99 43.68 29.55 68.60 2.03 45.71 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 6 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 7 C -0.34 -19.55 9.68 84.04 0.81 -18.74 16 8 H 0.07 4.70 7.16 -2.92 -0.02 4.68 16 9 N -0.57 -29.77 5.29 -306.99 -1.62 -31.39 16 10 C 0.43 21.46 7.82 87.66 0.69 22.15 16 11 O -0.63 -37.28 15.78 -3.08 -0.05 -37.33 16 12 C 0.07 2.34 6.17 85.55 0.53 2.87 16 13 N -0.68 -24.03 5.75 -521.98 -3.00 -27.03 16 14 C 0.05 1.12 4.51 85.56 0.39 1.50 16 15 C 0.51 14.19 7.74 87.66 0.68 14.87 16 16 O -0.58 -22.81 15.62 -3.03 -0.05 -22.86 16 17 N -0.61 -11.94 2.97 -818.14 -2.43 -14.36 16 18 C 0.10 1.04 6.37 86.51 0.55 1.59 16 19 C -0.13 -1.18 6.10 30.82 0.19 -0.99 16 20 C -0.12 -1.04 5.88 30.62 0.18 -0.86 16 21 C -0.13 -1.75 6.08 30.65 0.19 -1.57 16 22 C 0.11 1.94 6.43 86.35 0.55 2.49 16 23 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 24 H 0.40 19.31 7.90 -92.70 -0.73 18.58 16 25 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 26 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 27 H 0.34 13.78 8.13 -89.69 -0.73 13.05 16 28 H 0.09 1.54 7.93 -2.39 -0.02 1.52 16 29 H 0.13 2.31 7.70 -2.39 -0.02 2.29 16 30 H 0.09 0.66 8.14 -2.39 -0.02 0.65 16 31 H 0.10 0.82 5.93 -2.39 -0.01 0.80 16 32 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.09 0.92 8.14 -2.39 -0.02 0.91 16 38 H 0.06 1.53 7.00 -2.39 -0.02 1.51 16 39 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -79.34 323.08 -0.01 -79.35 By element: Atomic # 1 Polarization: 34.45 SS G_CDS: -0.39 Total: 34.05 kcal Atomic # 6 Polarization: 17.99 SS G_CDS: 5.22 Total: 23.20 kcal Atomic # 7 Polarization: -115.36 SS G_CDS: -6.77 Total: -122.13 kcal Atomic # 8 Polarization: -60.09 SS G_CDS: -0.10 Total: -60.19 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -79.34 -0.01 -79.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228814417.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.403 kcal (2) G-P(sol) polarization free energy of solvation -79.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds