Wall clock time and date at job start Mon Mar 30 2020 05:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.50476 * 2 1 4 4 C 1.53040 * 109.50520 * 239.89015 * 2 1 3 5 5 N 1.46844 * 109.52767 * 180.87655 * 4 2 1 6 6 C 1.46897 * 111.00011 * 185.83998 * 5 4 2 7 7 C 1.46844 * 111.19789 * 61.73863 * 5 4 2 8 8 C 1.53036 * 109.52605 * 298.25906 * 7 5 4 9 9 C 1.53117 * 109.50802 * 120.08528 * 2 1 3 10 10 H 1.09001 * 109.52221 * 297.56047 * 9 2 1 11 11 N 1.46496 * 109.51944 * 57.68931 * 9 2 1 12 12 C 1.34777 * 119.99614 * 204.99782 * 11 9 2 13 13 O 1.21435 * 120.00282 * 0.02562 * 12 11 9 14 14 C 1.48836 * 119.99935 * 180.02562 * 12 11 9 15 15 O 1.21494 * 119.99792 * 0.02562 * 14 12 11 16 16 N 1.34773 * 119.99906 * 179.73002 * 14 12 11 17 17 C 1.36125 * 120.00010 * 180.02562 * 16 14 12 18 18 H 1.07998 * 119.99572 * 359.97438 * 17 16 14 19 19 C 1.39585 * 120.00037 * 179.97438 * 17 16 14 20 20 N 1.31014 * 120.00014 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 120.00073 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.46896 * 90.00077 * 21 19 17 23 23 H 1.48494 * 109.47103 * 209.99881 * 21 19 17 24 24 H 1.48497 * 109.46972 * 330.00496 * 21 19 17 25 25 H 1.09007 * 109.47254 * 299.91112 * 1 2 3 26 26 H 1.08996 * 109.47423 * 59.91308 * 1 2 3 27 27 H 1.09005 * 109.47113 * 179.91749 * 1 2 3 28 28 H 1.08999 * 109.45812 * 300.89627 * 4 2 1 29 29 H 1.09006 * 109.45833 * 60.85817 * 4 2 1 30 30 H 1.09000 * 109.47662 * 60.00244 * 6 5 4 31 31 H 1.09002 * 109.47045 * 180.02562 * 6 5 4 32 32 H 1.09000 * 109.47144 * 299.99916 * 6 5 4 33 33 H 1.09005 * 109.45892 * 58.27591 * 7 5 4 34 34 H 1.08996 * 109.46533 * 178.23882 * 7 5 4 35 35 H 1.08997 * 109.50435 * 299.24334 * 8 7 5 36 36 H 1.08997 * 109.50306 * 179.11339 * 8 7 5 37 37 H 0.96996 * 120.00499 * 25.00359 * 11 9 2 38 38 H 0.96998 * 120.00525 * 359.97438 * 16 14 12 39 39 H 0.96995 * 120.00068 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0409 -0.7237 -1.2479 5 7 3.5092 -0.7423 -1.2378 6 6 4.0371 -1.3063 -2.4873 7 6 4.0230 -1.4729 -0.0722 8 6 3.5713 -0.7715 1.2108 9 6 2.0412 -0.7235 1.2488 10 1 1.7148 -0.1871 2.1398 11 7 1.5090 -2.0881 1.2763 12 6 1.3824 -2.7384 2.4500 13 8 1.7089 -2.1931 3.4847 14 6 0.8422 -4.1250 2.4780 15 8 0.5159 -4.6708 1.4427 16 7 0.7206 -4.7773 3.6510 17 6 0.2271 -6.0456 3.6766 18 1 -0.0674 -6.5290 2.7568 19 6 0.1016 -6.7214 4.8915 20 7 -0.3738 -7.9420 4.9161 21 14 0.6117 -5.8855 6.4823 22 1 -0.5493 -5.1561 7.0525 23 1 1.0780 -6.9090 7.4518 24 1 1.7119 -4.9268 6.2069 25 1 -0.3634 0.5125 0.8908 26 1 -0.3634 0.5152 -0.8891 27 1 -0.3633 -1.0277 -0.0015 28 1 1.6647 -1.7467 -1.2540 29 1 1.6904 -0.2027 -2.1389 30 1 3.7011 -0.7015 -3.3295 31 1 5.1266 -1.3087 -2.4530 32 1 3.6755 -2.3276 -2.6062 33 1 3.6375 -2.4924 -0.0839 34 1 5.1120 -1.4961 -0.1093 35 1 3.9678 0.2436 1.2296 36 1 3.9396 -1.3229 2.0759 37 1 1.2479 -2.5236 0.4499 38 1 0.9855 -4.3433 4.4771 39 1 -0.4607 -8.4117 5.7603 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229615601.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:53 Heat of formation + Delta-G solvation = -69.683273 kcal Electronic energy + Delta-G solvation = -21393.551984 eV Core-core repulsion = 18142.974789 eV Total energy + Delta-G solvation = -3250.577195 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.38158 -38.86329 -37.22165 -35.16680 -34.26643 -32.66075 -31.91193 -31.23464 -27.12889 -26.69405 -25.71753 -23.39879 -22.39413 -21.80357 -19.74870 -19.04705 -18.96577 -17.01812 -16.08136 -15.71111 -15.43697 -15.25242 -15.02385 -14.85127 -14.28748 -14.09008 -13.56737 -13.48852 -12.89744 -12.79914 -12.69051 -12.57937 -12.43850 -12.38198 -12.03243 -11.54126 -11.38966 -11.29541 -11.03002 -10.76634 -10.69264 -10.55173 -10.35282 -10.11000 -9.78523 -8.86145 -8.44551 -8.43041 -8.42464 -6.60162 -4.01850 2.29161 3.03318 3.06540 3.09507 3.29844 3.78345 3.94476 4.13603 4.49095 4.70802 4.75372 4.80967 5.02606 5.11406 5.16160 5.25437 5.32435 5.34271 5.44948 5.53039 5.61164 5.66333 5.70404 5.74237 5.80763 5.90263 5.96652 6.06343 6.13880 6.21562 6.72448 6.90040 6.92573 7.24940 7.65556 7.90650 8.23692 8.50724 8.73577 9.18025 9.60219 10.49944 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.029834 B = 0.004594 C = 0.004516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.308196 B = 6093.123253 C = 6198.458800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.093 4.093 3 H 0.092 0.908 4 C 0.056 3.944 5 N -0.543 5.543 6 C 0.024 3.976 7 C 0.053 3.947 8 C -0.127 4.127 9 C 0.146 3.854 10 H 0.091 0.909 11 N -0.705 5.705 12 C 0.515 3.485 13 O -0.550 6.550 14 C 0.403 3.597 15 O -0.581 6.581 16 N -0.527 5.527 17 C -0.309 4.309 18 H 0.127 0.873 19 C 0.053 3.947 20 N -0.850 5.850 21 Si 0.876 3.124 22 H -0.264 1.264 23 H -0.270 1.270 24 H -0.260 1.260 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.037 0.963 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.027 0.973 33 H 0.040 0.960 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.407 0.593 38 H 0.384 0.616 39 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.314 15.374 -9.189 18.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.113 4.113 3 H 0.110 0.890 4 C -0.072 4.072 5 N -0.267 5.267 6 C -0.124 4.124 7 C -0.075 4.075 8 C -0.166 4.166 9 C 0.042 3.958 10 H 0.109 0.891 11 N -0.359 5.359 12 C 0.299 3.701 13 O -0.427 6.427 14 C 0.188 3.812 15 O -0.467 6.467 16 N -0.164 5.164 17 C -0.439 4.439 18 H 0.144 0.856 19 C -0.155 4.155 20 N -0.487 5.487 21 Si 0.700 3.300 22 H -0.189 1.189 23 H -0.195 1.195 24 H -0.184 1.184 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.055 0.945 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.045 0.955 33 H 0.058 0.942 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.244 0.756 38 H 0.218 0.782 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.438 15.691 -8.970 19.186 hybrid contribution -0.017 -0.640 0.826 1.045 sum 6.421 15.051 -8.144 18.278 Atomic orbital electron populations 1.21810 0.94183 1.02743 1.01957 1.21440 0.96005 1.00348 0.93463 0.88989 1.22184 0.87340 0.99320 0.98386 1.61960 1.07974 1.54189 1.02599 1.22348 1.00480 0.97783 0.91789 1.22100 0.99759 0.95665 0.89952 1.21978 0.95494 1.01873 0.97248 1.21033 0.93127 0.82853 0.98834 0.89094 1.45798 1.65073 1.15317 1.09745 1.20609 0.78114 0.87898 0.83488 1.90669 1.50283 1.69041 1.32729 1.18884 0.90146 0.86987 0.85209 1.90614 1.55854 1.68428 1.31819 1.41830 1.52668 1.14386 1.07486 1.19556 1.38629 0.88187 0.97497 0.85553 1.25230 0.96266 0.95549 0.98490 1.69440 1.40481 1.10534 1.28209 0.86676 0.80157 0.80136 0.82983 1.18878 1.19524 1.18443 0.92130 0.92385 0.92034 0.94457 0.90431 0.91440 0.91436 0.95454 0.94201 0.90791 0.90281 0.90640 0.75593 0.78158 0.90774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.01 37.15 0.33 -1.19 16 2 C -0.09 -0.97 2.67 -90.54 -0.24 -1.22 16 3 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 4 C 0.06 0.58 4.59 -3.83 -0.02 0.56 16 5 N -0.54 -5.82 4.91 -242.96 -1.19 -7.01 16 6 C 0.02 0.22 9.59 60.06 0.58 0.80 16 7 C 0.05 0.63 5.32 -3.84 -0.02 0.61 16 8 C -0.13 -1.56 5.76 -26.65 -0.15 -1.72 16 9 C 0.15 1.92 2.28 -67.81 -0.15 1.76 16 10 H 0.09 1.28 7.58 -51.93 -0.39 0.89 16 11 N -0.71 -11.36 3.62 -54.31 -0.20 -11.56 16 12 C 0.51 10.48 7.84 -11.87 -0.09 10.39 16 13 O -0.55 -11.85 16.13 5.42 0.09 -11.77 16 14 C 0.40 9.76 7.82 -11.88 -0.09 9.66 16 15 O -0.58 -15.32 16.03 5.37 0.09 -15.24 16 16 N -0.53 -13.33 5.06 -11.59 -0.06 -13.39 16 17 C -0.31 -8.64 10.16 -15.14 -0.15 -8.80 16 18 H 0.13 3.94 7.36 -52.49 -0.39 3.55 16 19 C 0.05 1.41 5.51 -17.40 -0.10 1.32 16 20 N -0.85 -23.64 13.94 55.53 0.77 -22.87 16 21 Si 0.88 19.37 27.74 -169.99 -4.72 14.66 16 22 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 23 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 24 H -0.26 -5.58 6.53 56.52 0.37 -5.21 16 25 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.73 7.31 -51.93 -0.38 0.35 16 28 H 0.04 0.43 6.64 -51.93 -0.34 0.09 16 29 H 0.08 0.70 8.12 -51.93 -0.42 0.28 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 32 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.04 0.55 7.69 -51.93 -0.40 0.15 16 34 H 0.07 0.80 8.08 -51.93 -0.42 0.38 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.41 6.50 6.12 -40.82 -0.25 6.25 16 38 H 0.38 9.13 5.22 -40.82 -0.21 8.92 16 39 H 0.28 7.15 8.30 -40.82 -0.34 6.81 16 LS Contribution 316.21 15.07 4.77 4.77 Total: -1.00 -30.31 316.21 -6.32 -36.62 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: -5.75 Total: 13.60 kcal Atomic # 6 Polarization: 12.30 SS G_CDS: -0.11 Total: 12.18 kcal Atomic # 7 Polarization: -54.15 SS G_CDS: -0.67 Total: -54.83 kcal Atomic # 8 Polarization: -27.18 SS G_CDS: 0.17 Total: -27.00 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -4.72 Total: 14.66 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.31 -6.32 -36.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229615601.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.060 kcal (2) G-P(sol) polarization free energy of solvation -30.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds