Wall clock time and date at job start Mon Mar 30 2020 05:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.50476 * 2 1 4 4 C 1.53040 * 109.50520 * 239.89015 * 2 1 3 5 5 N 1.46844 * 109.52767 * 180.87655 * 4 2 1 6 6 C 1.46897 * 111.00011 * 185.83998 * 5 4 2 7 7 C 1.46844 * 111.19789 * 61.73863 * 5 4 2 8 8 C 1.53036 * 109.52605 * 298.25906 * 7 5 4 9 9 C 1.53117 * 109.50802 * 120.08528 * 2 1 3 10 10 H 1.09001 * 109.52221 * 297.56047 * 9 2 1 11 11 N 1.46496 * 109.51944 * 57.68931 * 9 2 1 12 12 C 1.34777 * 119.99614 * 204.99782 * 11 9 2 13 13 O 1.21435 * 120.00282 * 0.02562 * 12 11 9 14 14 C 1.48836 * 119.99935 * 180.02562 * 12 11 9 15 15 O 1.21494 * 119.99792 * 0.02562 * 14 12 11 16 16 N 1.34773 * 119.99906 * 179.73002 * 14 12 11 17 17 C 1.36125 * 120.00010 * 180.02562 * 16 14 12 18 18 H 1.07998 * 119.99572 * 359.97438 * 17 16 14 19 19 C 1.39585 * 120.00037 * 179.97438 * 17 16 14 20 20 N 1.31014 * 120.00014 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 120.00073 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.46896 * 90.00077 * 21 19 17 23 23 H 1.48494 * 109.47103 * 209.99881 * 21 19 17 24 24 H 1.48497 * 109.46972 * 330.00496 * 21 19 17 25 25 H 1.09007 * 109.47254 * 299.91112 * 1 2 3 26 26 H 1.08996 * 109.47423 * 59.91308 * 1 2 3 27 27 H 1.09005 * 109.47113 * 179.91749 * 1 2 3 28 28 H 1.08999 * 109.45812 * 300.89627 * 4 2 1 29 29 H 1.09006 * 109.45833 * 60.85817 * 4 2 1 30 30 H 1.09000 * 109.47662 * 60.00244 * 6 5 4 31 31 H 1.09002 * 109.47045 * 180.02562 * 6 5 4 32 32 H 1.09000 * 109.47144 * 299.99916 * 6 5 4 33 33 H 1.09005 * 109.45892 * 58.27591 * 7 5 4 34 34 H 1.08996 * 109.46533 * 178.23882 * 7 5 4 35 35 H 1.08997 * 109.50435 * 299.24334 * 8 7 5 36 36 H 1.08997 * 109.50306 * 179.11339 * 8 7 5 37 37 H 0.96996 * 120.00499 * 25.00359 * 11 9 2 38 38 H 0.96998 * 120.00525 * 359.97438 * 16 14 12 39 39 H 0.96995 * 120.00068 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0409 -0.7237 -1.2479 5 7 3.5092 -0.7423 -1.2378 6 6 4.0371 -1.3063 -2.4873 7 6 4.0230 -1.4729 -0.0722 8 6 3.5713 -0.7715 1.2108 9 6 2.0412 -0.7235 1.2488 10 1 1.7148 -0.1871 2.1398 11 7 1.5090 -2.0881 1.2763 12 6 1.3824 -2.7384 2.4500 13 8 1.7089 -2.1931 3.4847 14 6 0.8422 -4.1250 2.4780 15 8 0.5159 -4.6708 1.4427 16 7 0.7206 -4.7773 3.6510 17 6 0.2271 -6.0456 3.6766 18 1 -0.0674 -6.5290 2.7568 19 6 0.1016 -6.7214 4.8915 20 7 -0.3738 -7.9420 4.9161 21 14 0.6117 -5.8855 6.4823 22 1 -0.5493 -5.1561 7.0525 23 1 1.0780 -6.9090 7.4518 24 1 1.7119 -4.9268 6.2069 25 1 -0.3634 0.5125 0.8908 26 1 -0.3634 0.5152 -0.8891 27 1 -0.3633 -1.0277 -0.0015 28 1 1.6647 -1.7467 -1.2540 29 1 1.6904 -0.2027 -2.1389 30 1 3.7011 -0.7015 -3.3295 31 1 5.1266 -1.3087 -2.4530 32 1 3.6755 -2.3276 -2.6062 33 1 3.6375 -2.4924 -0.0839 34 1 5.1120 -1.4961 -0.1093 35 1 3.9678 0.2436 1.2296 36 1 3.9396 -1.3229 2.0759 37 1 1.2479 -2.5236 0.4499 38 1 0.9855 -4.3433 4.4771 39 1 -0.4607 -8.4117 5.7603 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229615601.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:53 Heat of formation + Delta-G solvation = -93.143351 kcal Electronic energy + Delta-G solvation = -21394.569289 eV Core-core repulsion = 18142.974789 eV Total energy + Delta-G solvation = -3251.594500 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.78341 -40.34206 -38.94627 -36.60241 -35.97384 -34.07212 -33.63215 -32.40133 -28.27850 -27.89746 -27.15654 -24.85538 -23.60344 -22.71538 -21.48572 -20.96508 -20.15309 -18.78879 -17.74341 -16.95928 -16.77598 -16.64180 -16.25783 -16.20829 -15.53194 -15.45231 -15.08361 -14.75750 -14.64106 -14.43636 -14.27402 -13.69606 -13.48110 -13.22883 -13.10992 -12.84278 -12.58245 -12.55479 -12.37557 -12.31913 -12.00124 -11.90661 -11.73650 -11.66432 -11.29012 -10.50055 -10.35616 -10.20111 -9.33462 -8.64643 -6.18919 0.50544 1.27375 1.31735 1.37534 1.72535 2.08479 2.26909 2.92782 3.03843 3.06365 3.56249 3.77053 3.80053 3.91347 4.08214 4.29826 4.39066 4.44493 4.53610 4.61111 4.66211 4.75945 4.83028 4.88624 4.94647 5.02686 5.04459 5.13566 5.18063 5.24316 5.32541 5.45018 5.71376 6.02691 6.06375 6.09623 6.34828 6.56244 6.89723 7.12573 7.59818 8.49943 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.029834 B = 0.004594 C = 0.004516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.308196 B = 6093.123253 C = 6198.458800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.083 4.083 3 H 0.114 0.886 4 C 0.054 3.946 5 N -0.541 5.541 6 C 0.022 3.978 7 C 0.055 3.945 8 C -0.122 4.122 9 C 0.140 3.860 10 H 0.087 0.913 11 N -0.684 5.684 12 C 0.524 3.476 13 O -0.558 6.558 14 C 0.404 3.596 15 O -0.606 6.606 16 N -0.531 5.531 17 C -0.340 4.340 18 H 0.077 0.923 19 C 0.012 3.988 20 N -0.892 5.892 21 Si 0.948 3.052 22 H -0.251 1.251 23 H -0.256 1.256 24 H -0.249 1.249 25 H 0.060 0.940 26 H 0.080 0.920 27 H 0.039 0.961 28 H 0.020 0.980 29 H 0.099 0.901 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.017 0.983 33 H 0.014 0.986 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.056 0.944 37 H 0.409 0.591 38 H 0.393 0.607 39 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.388 18.245 -9.049 21.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.102 4.102 3 H 0.132 0.868 4 C -0.074 4.074 5 N -0.265 5.265 6 C -0.125 4.125 7 C -0.073 4.073 8 C -0.161 4.161 9 C 0.036 3.964 10 H 0.105 0.895 11 N -0.337 5.337 12 C 0.306 3.694 13 O -0.437 6.437 14 C 0.189 3.811 15 O -0.494 6.494 16 N -0.169 5.169 17 C -0.470 4.470 18 H 0.095 0.905 19 C -0.193 4.193 20 N -0.529 5.529 21 Si 0.768 3.232 22 H -0.175 1.175 23 H -0.180 1.180 24 H -0.173 1.173 25 H 0.079 0.921 26 H 0.099 0.901 27 H 0.058 0.942 28 H 0.038 0.962 29 H 0.117 0.883 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.035 0.965 33 H 0.032 0.968 34 H 0.104 0.896 35 H 0.120 0.880 36 H 0.074 0.926 37 H 0.246 0.754 38 H 0.229 0.771 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 7.513 18.573 -8.865 21.908 hybrid contribution -0.348 -1.490 0.582 1.637 sum 7.165 17.083 -8.283 20.292 Atomic orbital electron populations 1.21803 0.93945 1.01675 1.03121 1.21421 0.96089 1.00871 0.91803 0.86800 1.22249 0.87259 0.98634 0.99237 1.62018 1.08033 1.53710 1.02708 1.22429 1.01075 0.97473 0.91563 1.22060 1.00476 0.94334 0.90430 1.21936 0.94511 1.02934 0.96723 1.21377 0.93904 0.80749 1.00335 0.89524 1.45813 1.63269 1.16318 1.08288 1.19824 0.78529 0.86312 0.84694 1.90667 1.51068 1.68716 1.33236 1.19737 0.88462 0.88439 0.84500 1.90593 1.56328 1.69660 1.32801 1.41701 1.53294 1.13689 1.08236 1.19166 1.41454 0.89763 0.96578 0.90528 1.26078 0.95353 0.95941 1.01920 1.69544 1.41299 1.12112 1.29916 0.85591 0.80383 0.79506 0.77751 1.17507 1.17980 1.17281 0.92135 0.90142 0.94170 0.96185 0.88316 0.89757 0.90536 0.96471 0.96750 0.89597 0.87994 0.92561 0.75387 0.77090 0.89877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 9.01 71.98 0.65 -2.02 16 2 C -0.08 -1.50 2.67 -10.74 -0.03 -1.53 16 3 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 4 C 0.05 1.00 4.59 86.33 0.40 1.39 16 5 N -0.54 -10.21 4.91 -922.60 -4.53 -14.74 16 6 C 0.02 0.36 9.59 127.69 1.22 1.58 16 7 C 0.06 1.21 5.32 86.33 0.46 1.67 16 8 C -0.12 -2.77 5.76 30.65 0.18 -2.59 16 9 C 0.14 3.41 2.28 45.07 0.10 3.51 16 10 H 0.09 2.26 7.58 -2.39 -0.02 2.24 16 11 N -0.68 -21.68 3.62 -444.07 -1.61 -23.29 16 12 C 0.52 21.23 7.84 87.08 0.68 21.91 16 13 O -0.56 -23.48 16.13 -3.51 -0.06 -23.54 16 14 C 0.40 19.98 7.82 87.08 0.68 20.66 16 15 O -0.61 -33.21 16.03 -3.70 -0.06 -33.27 16 16 N -0.53 -27.39 5.06 -308.88 -1.56 -28.95 16 17 C -0.34 -19.85 10.16 84.35 0.86 -18.99 16 18 H 0.08 5.13 7.36 -2.91 -0.02 5.11 16 19 C 0.01 0.67 5.51 85.14 0.47 1.13 16 20 N -0.89 -50.89 13.94 21.76 0.30 -50.59 16 21 Si 0.95 39.50 27.74 68.60 1.90 41.41 16 22 H -0.25 -9.94 7.11 99.48 0.71 -9.24 16 23 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 24 H -0.25 -9.85 6.53 99.48 0.65 -9.20 16 25 H 0.06 1.10 8.14 -2.38 -0.02 1.09 16 26 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.04 0.90 7.31 -2.38 -0.02 0.88 16 28 H 0.02 0.44 6.64 -2.39 -0.02 0.43 16 29 H 0.10 1.44 8.12 -2.38 -0.02 1.42 16 30 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.08 1.09 8.09 -2.39 -0.02 1.07 16 32 H 0.02 0.31 8.14 -2.39 -0.02 0.29 16 33 H 0.01 0.39 7.69 -2.38 -0.02 0.37 16 34 H 0.09 1.68 8.08 -2.39 -0.02 1.66 16 35 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.41 13.03 6.12 -92.71 -0.57 12.46 16 38 H 0.39 18.55 5.22 -92.71 -0.48 18.07 16 39 H 0.29 14.94 8.30 -92.71 -0.77 14.17 16 Total: -1.00 -67.62 316.21 0.02 -67.60 By element: Atomic # 1 Polarization: 38.70 SS G_CDS: -0.04 Total: 38.66 kcal Atomic # 6 Polarization: 21.05 SS G_CDS: 5.67 Total: 26.72 kcal Atomic # 7 Polarization: -110.18 SS G_CDS: -7.39 Total: -117.57 kcal Atomic # 8 Polarization: -56.69 SS G_CDS: -0.12 Total: -56.81 kcal Atomic # 14 Polarization: 39.50 SS G_CDS: 1.90 Total: 41.41 kcal Total: -67.62 0.02 -67.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229615601.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.544 kcal (2) G-P(sol) polarization free energy of solvation -67.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds