Wall clock time and date at job start Mon Mar 30 2020 05:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47318 * 2 1 4 4 N 1.46498 * 109.46847 * 120.00091 * 2 1 3 5 5 C 1.46494 * 120.00300 * 299.99904 * 4 2 1 6 6 C 1.50692 * 109.47377 * 270.00346 * 5 4 2 7 7 H 1.08001 * 119.99739 * 359.97438 * 6 5 4 8 8 C 1.37882 * 120.00459 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00160 * 179.97438 * 8 6 5 10 10 Si 1.86794 * 119.99780 * 0.02562 * 8 6 5 11 11 H 1.48495 * 109.47386 * 89.99816 * 10 8 6 12 12 H 1.48500 * 109.47242 * 209.99909 * 10 8 6 13 13 H 1.48504 * 109.47214 * 330.00096 * 10 8 6 14 14 C 1.34775 * 120.00004 * 119.99965 * 4 2 1 15 15 O 1.21280 * 120.00561 * 179.97438 * 14 4 2 16 16 C 1.50701 * 120.00057 * 359.97438 * 14 4 2 17 17 H 1.09001 * 109.71805 * 40.37729 * 16 14 4 18 18 C 1.52985 * 109.59580 * 280.00015 * 16 14 4 19 19 N 1.46006 * 109.94811 * 189.87692 * 18 16 14 20 20 C 1.33709 * 122.93245 * 18.19434 * 19 18 16 21 21 O 1.21287 * 118.63263 * 178.33728 * 20 19 18 22 22 C 1.50265 * 122.74794 * 358.31532 * 20 19 18 23 23 N 1.46903 * 109.97841 * 17.22087 * 22 20 19 24 24 H 1.08991 * 109.47173 * 299.99862 * 1 2 3 25 25 H 1.09001 * 109.46968 * 60.00297 * 1 2 3 26 26 H 1.09001 * 109.47174 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46860 * 240.00045 * 2 1 3 28 28 H 1.08991 * 109.47261 * 179.97438 * 3 2 1 29 29 H 1.09004 * 109.47368 * 300.00316 * 3 2 1 30 30 H 1.09008 * 109.46786 * 59.99687 * 3 2 1 31 31 H 1.09010 * 109.47316 * 30.00190 * 5 4 2 32 32 H 1.09003 * 109.47777 * 149.99850 * 5 4 2 33 33 H 0.96997 * 119.99866 * 180.02562 * 9 8 6 34 34 H 1.09002 * 109.37610 * 69.75697 * 18 16 14 35 35 H 1.08999 * 109.37155 * 309.99184 * 18 16 14 36 36 H 0.97007 * 118.53474 * 198.22312 * 19 18 16 37 37 H 1.09001 * 109.38479 * 137.38127 * 22 20 19 38 38 H 1.09000 * 109.38579 * 257.16647 * 22 20 19 39 39 H 1.00897 * 110.99698 * 186.33347 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6644 -0.1902 2.5267 6 6 2.7030 0.8017 2.9830 7 1 3.5430 1.0356 2.3457 8 6 2.5810 1.4107 4.2140 9 7 3.4878 2.2759 4.6124 10 14 1.1286 1.0056 5.3165 11 1 1.4780 -0.1396 6.1948 12 1 0.7969 2.1873 6.1524 13 1 -0.0440 0.6470 4.4787 14 6 2.7931 -1.7864 1.0725 15 8 3.1978 -2.3580 2.0627 16 6 3.1567 -2.3016 -0.2962 17 1 3.3782 -1.4640 -0.9576 18 6 1.9904 -3.1110 -0.8664 19 7 2.4121 -3.8060 -2.0791 20 6 3.6963 -4.0125 -2.3894 21 8 3.9581 -4.6262 -3.4022 22 6 4.8288 -3.5154 -1.5359 23 7 4.3351 -3.1769 -0.1944 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 0.6903 0.2973 2.4844 32 1 1.6237 -1.0227 3.2292 33 1 3.4021 2.7040 5.4786 34 1 1.1654 -2.4390 -1.1030 35 1 1.6614 -3.8411 -0.1270 36 1 1.7303 -4.1322 -2.6872 37 1 5.5896 -4.2919 -1.4563 38 1 5.2646 -2.6277 -1.9942 39 1 5.0599 -2.7453 0.3593 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230835392.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:24 Heat of formation + Delta-G solvation = -56.130096 kcal Electronic energy + Delta-G solvation = -21802.257205 eV Core-core repulsion = 18552.267720 eV Total energy + Delta-G solvation = -3249.989485 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.66695 -39.30593 -36.70988 -36.09605 -33.98428 -32.84364 -31.16186 -30.51429 -27.90165 -26.93565 -25.91515 -24.22328 -22.37073 -21.54297 -19.69814 -18.35624 -17.59558 -17.04331 -16.96421 -16.57112 -15.87425 -15.51144 -14.84899 -14.49919 -14.41828 -13.92563 -13.80621 -13.64710 -13.31912 -12.82226 -12.70603 -12.55096 -12.26095 -11.93895 -11.82932 -11.75116 -11.50733 -11.08394 -10.99056 -10.60926 -10.47088 -10.17632 -10.12637 -9.55116 -9.32207 -9.16688 -8.71451 -8.63708 -7.86658 -6.14156 -4.12526 2.43168 2.90977 3.18362 3.23977 3.29463 3.32360 3.41607 3.97832 4.34095 4.36913 4.56936 4.72623 4.83484 5.06075 5.06836 5.17904 5.20659 5.28961 5.33524 5.42565 5.66286 5.81365 5.94065 6.08510 6.19348 6.34450 6.39119 6.59524 6.70042 6.85309 6.89139 7.03387 7.05626 7.21320 7.54434 8.00362 8.08935 8.39635 8.77099 8.89482 9.45925 10.98845 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.028096 B = 0.005401 C = 0.005091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.344517 B = 5182.619645 C = 5498.516615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.128 3.872 3 C -0.157 4.157 4 N -0.584 5.584 5 C 0.216 3.784 6 C -0.524 4.524 7 H 0.076 0.924 8 C 0.073 3.927 9 N -0.896 5.896 10 Si 0.873 3.127 11 H -0.274 1.274 12 H -0.286 1.286 13 H -0.266 1.266 14 C 0.513 3.487 15 O -0.515 6.515 16 C 0.047 3.953 17 H 0.071 0.929 18 C 0.124 3.876 19 N -0.715 5.715 20 C 0.526 3.474 21 O -0.558 6.558 22 C 0.040 3.960 23 N -0.659 5.659 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.054 0.946 27 H 0.076 0.924 28 H 0.056 0.944 29 H 0.050 0.950 30 H 0.083 0.917 31 H 0.033 0.967 32 H 0.036 0.964 33 H 0.264 0.736 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.401 0.599 37 H 0.119 0.881 38 H 0.071 0.929 39 H 0.366 0.634 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.130 -5.799 -12.685 14.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.024 3.976 3 C -0.215 4.215 4 N -0.316 5.316 5 C 0.095 3.905 6 C -0.563 4.563 7 H 0.094 0.906 8 C -0.129 4.129 9 N -0.535 5.535 10 Si 0.700 3.300 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.191 1.191 14 C 0.296 3.704 15 O -0.389 6.389 16 C -0.066 4.066 17 H 0.089 0.911 18 C -0.001 4.001 19 N -0.367 5.367 20 C 0.313 3.687 21 O -0.436 6.436 22 C -0.092 4.092 23 N -0.295 5.295 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.073 0.927 27 H 0.094 0.906 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.102 0.898 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.237 0.763 37 H 0.137 0.863 38 H 0.089 0.911 39 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -4.926 -6.787 -12.266 14.859 hybrid contribution -0.549 0.824 0.277 1.028 sum -5.475 -5.963 -11.989 14.466 Atomic orbital electron populations 1.22201 0.95312 1.01901 1.02810 1.21146 0.94269 0.94642 0.87567 1.22140 1.01719 0.95122 1.02555 1.48052 1.49220 1.26122 1.08203 1.19668 0.96474 0.95257 0.79070 1.21288 1.09263 1.22645 1.03087 0.90591 1.24843 0.96044 0.94705 0.97356 1.69885 1.34542 1.28250 1.20790 0.86904 0.83359 0.78303 0.81435 1.19924 1.21140 1.19111 1.19738 0.80047 0.81173 0.89406 1.90725 1.52041 1.57572 1.38566 1.21875 0.93166 0.94783 0.96822 0.91123 1.21459 0.95699 0.96254 0.86663 1.45497 1.07618 1.58928 1.24657 1.20170 0.84262 0.78736 0.85545 1.90764 1.83768 1.41629 1.27404 1.22146 0.95953 1.02411 0.88689 1.60647 1.09389 1.46990 1.12431 0.91301 0.91834 0.92735 0.90612 0.92479 0.93094 0.89817 0.94907 0.94570 0.92556 0.89475 0.89968 0.76251 0.86342 0.91092 0.81307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 9.17 37.16 0.34 -1.58 16 2 C 0.13 1.76 2.65 -67.93 -0.18 1.58 16 3 C -0.16 -2.36 8.47 37.16 0.31 -2.05 16 4 N -0.58 -10.53 2.39 -167.48 -0.40 -10.93 16 5 C 0.22 4.80 3.66 -5.20 -0.02 4.78 16 6 C -0.52 -13.87 8.38 -34.44 -0.29 -14.16 16 7 H 0.08 2.21 7.87 -52.49 -0.41 1.79 16 8 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 9 N -0.90 -26.48 13.96 55.43 0.77 -25.70 16 10 Si 0.87 20.61 27.47 -169.99 -4.67 15.94 16 11 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.27 -5.86 6.54 56.52 0.37 -5.49 16 14 C 0.51 9.24 6.80 -10.99 -0.07 9.17 16 15 O -0.51 -11.59 15.98 5.56 0.09 -11.50 16 16 C 0.05 0.63 2.02 -68.74 -0.14 0.49 16 17 H 0.07 0.85 6.59 -51.93 -0.34 0.51 16 18 C 0.12 1.35 6.48 -4.32 -0.03 1.33 16 19 N -0.71 -7.63 5.52 -61.06 -0.34 -7.97 16 20 C 0.53 6.76 7.81 -11.67 -0.09 6.67 16 21 O -0.56 -8.91 17.83 5.55 0.10 -8.81 16 22 C 0.04 0.45 6.67 -5.19 -0.03 0.41 16 23 N -0.66 -8.71 6.28 -109.29 -0.69 -9.39 16 24 H 0.07 0.93 6.66 -51.93 -0.35 0.59 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.57 7.97 -51.93 -0.41 0.16 16 27 H 0.08 0.85 4.68 -51.93 -0.24 0.60 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.08 1.51 6.92 -51.92 -0.36 1.15 16 31 H 0.03 0.70 5.48 -51.92 -0.28 0.41 16 32 H 0.04 0.88 6.85 -51.93 -0.36 0.52 16 33 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.09 0.76 6.80 -51.93 -0.35 0.40 16 35 H 0.08 0.98 8.11 -51.93 -0.42 0.56 16 36 H 0.40 3.58 8.84 -40.82 -0.36 3.22 16 37 H 0.12 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.37 4.96 8.53 -39.29 -0.34 4.62 16 LS Contribution 312.07 15.07 4.70 4.70 Total: -1.00 -33.34 312.07 -6.23 -39.57 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -5.51 Total: 5.53 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: -0.30 Total: 8.56 kcal Atomic # 7 Polarization: -53.35 SS G_CDS: -0.65 Total: -53.99 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: 0.19 Total: -20.30 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.67 Total: 15.94 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -33.34 -6.23 -39.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230835392.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.561 kcal (2) G-P(sol) polarization free energy of solvation -33.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds