Wall clock time and date at job start Mon Mar 30 2020 05:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47318 * 2 1 4 4 N 1.46498 * 109.46847 * 120.00091 * 2 1 3 5 5 C 1.46494 * 120.00300 * 299.99904 * 4 2 1 6 6 C 1.50692 * 109.47377 * 270.00346 * 5 4 2 7 7 H 1.08001 * 119.99739 * 359.97438 * 6 5 4 8 8 C 1.37882 * 120.00459 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00160 * 179.97438 * 8 6 5 10 10 Si 1.86794 * 119.99780 * 0.02562 * 8 6 5 11 11 H 1.48495 * 109.47386 * 89.99816 * 10 8 6 12 12 H 1.48500 * 109.47242 * 209.99909 * 10 8 6 13 13 H 1.48504 * 109.47214 * 330.00096 * 10 8 6 14 14 C 1.34775 * 120.00004 * 119.99965 * 4 2 1 15 15 O 1.21280 * 120.00561 * 179.97438 * 14 4 2 16 16 C 1.50701 * 120.00057 * 359.97438 * 14 4 2 17 17 H 1.09001 * 109.71805 * 40.37729 * 16 14 4 18 18 C 1.52985 * 109.59580 * 280.00015 * 16 14 4 19 19 N 1.46006 * 109.94811 * 189.87692 * 18 16 14 20 20 C 1.33709 * 122.93245 * 18.19434 * 19 18 16 21 21 O 1.21287 * 118.63263 * 178.33728 * 20 19 18 22 22 C 1.50265 * 122.74794 * 358.31532 * 20 19 18 23 23 N 1.46903 * 109.97841 * 17.22087 * 22 20 19 24 24 H 1.08991 * 109.47173 * 299.99862 * 1 2 3 25 25 H 1.09001 * 109.46968 * 60.00297 * 1 2 3 26 26 H 1.09001 * 109.47174 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46860 * 240.00045 * 2 1 3 28 28 H 1.08991 * 109.47261 * 179.97438 * 3 2 1 29 29 H 1.09004 * 109.47368 * 300.00316 * 3 2 1 30 30 H 1.09008 * 109.46786 * 59.99687 * 3 2 1 31 31 H 1.09010 * 109.47316 * 30.00190 * 5 4 2 32 32 H 1.09003 * 109.47777 * 149.99850 * 5 4 2 33 33 H 0.96997 * 119.99866 * 180.02562 * 9 8 6 34 34 H 1.09002 * 109.37610 * 69.75697 * 18 16 14 35 35 H 1.08999 * 109.37155 * 309.99184 * 18 16 14 36 36 H 0.97007 * 118.53474 * 198.22312 * 19 18 16 37 37 H 1.09001 * 109.38479 * 137.38127 * 22 20 19 38 38 H 1.09000 * 109.38579 * 257.16647 * 22 20 19 39 39 H 1.00897 * 110.99698 * 186.33347 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6644 -0.1902 2.5267 6 6 2.7030 0.8017 2.9830 7 1 3.5430 1.0356 2.3457 8 6 2.5810 1.4107 4.2140 9 7 3.4878 2.2759 4.6124 10 14 1.1286 1.0056 5.3165 11 1 1.4780 -0.1396 6.1948 12 1 0.7969 2.1873 6.1524 13 1 -0.0440 0.6470 4.4787 14 6 2.7931 -1.7864 1.0725 15 8 3.1978 -2.3580 2.0627 16 6 3.1567 -2.3016 -0.2962 17 1 3.3782 -1.4640 -0.9576 18 6 1.9904 -3.1110 -0.8664 19 7 2.4121 -3.8060 -2.0791 20 6 3.6963 -4.0125 -2.3894 21 8 3.9581 -4.6262 -3.4022 22 6 4.8288 -3.5154 -1.5359 23 7 4.3351 -3.1769 -0.1944 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 0.6903 0.2973 2.4844 32 1 1.6237 -1.0227 3.2292 33 1 3.4021 2.7040 5.4786 34 1 1.1654 -2.4390 -1.1030 35 1 1.6614 -3.8411 -0.1270 36 1 1.7303 -4.1322 -2.6872 37 1 5.5896 -4.2919 -1.4563 38 1 5.2646 -2.6277 -1.9942 39 1 5.0599 -2.7453 0.3593 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230835392.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:24 Heat of formation + Delta-G solvation = -84.402468 kcal Electronic energy + Delta-G solvation = -21803.483187 eV Core-core repulsion = 18552.267720 eV Total energy + Delta-G solvation = -3251.215467 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.78870 -40.56526 -37.90115 -37.42602 -34.93872 -34.84064 -32.59056 -31.74399 -29.56395 -28.00318 -26.85737 -25.53919 -23.98168 -22.76354 -20.82972 -19.49939 -19.02593 -18.82065 -18.13890 -17.62855 -16.93541 -16.83396 -16.23022 -16.06859 -15.48181 -15.25320 -15.02995 -14.81200 -14.54229 -14.35279 -13.96256 -13.84381 -13.53953 -13.33788 -13.23137 -12.85429 -12.78796 -12.60568 -12.36647 -12.26386 -11.89911 -11.74467 -11.52113 -11.15946 -10.76706 -10.66741 -10.22042 -9.71865 -9.42423 -8.27835 -6.30013 1.34917 1.39100 1.44569 1.45775 1.63457 2.04188 2.23910 2.34494 2.92850 3.06943 3.32127 3.55523 3.65522 3.80562 4.01069 4.21934 4.26916 4.34422 4.40621 4.45115 4.73963 4.75104 4.90077 4.93565 4.94770 5.05651 5.10867 5.41124 5.45766 5.50990 5.59708 5.68508 5.78912 5.97050 6.11559 6.29761 6.68533 6.72060 7.07853 7.25986 7.39762 8.88558 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.028096 B = 0.005401 C = 0.005091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.344517 B = 5182.619645 C = 5498.516615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.122 3.878 3 C -0.154 4.154 4 N -0.587 5.587 5 C 0.225 3.775 6 C -0.517 4.517 7 H 0.035 0.965 8 C 0.011 3.989 9 N -0.947 5.947 10 Si 0.937 3.063 11 H -0.280 1.280 12 H -0.281 1.281 13 H -0.236 1.236 14 C 0.508 3.492 15 O -0.569 6.569 16 C 0.056 3.944 17 H 0.092 0.908 18 C 0.130 3.870 19 N -0.701 5.701 20 C 0.524 3.476 21 O -0.592 6.592 22 C 0.043 3.957 23 N -0.673 5.673 24 H 0.047 0.953 25 H 0.096 0.904 26 H 0.071 0.929 27 H 0.112 0.888 28 H 0.032 0.968 29 H 0.089 0.911 30 H 0.046 0.954 31 H 0.052 0.948 32 H 0.017 0.983 33 H 0.265 0.735 34 H 0.121 0.879 35 H 0.074 0.926 36 H 0.413 0.587 37 H 0.127 0.873 38 H 0.091 0.909 39 H 0.361 0.639 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.430 -6.424 -14.681 17.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.020 3.980 3 C -0.212 4.212 4 N -0.318 5.318 5 C 0.103 3.897 6 C -0.555 4.555 7 H 0.053 0.947 8 C -0.186 4.186 9 N -0.588 5.588 10 Si 0.761 3.239 11 H -0.206 1.206 12 H -0.207 1.207 13 H -0.159 1.159 14 C 0.294 3.706 15 O -0.447 6.447 16 C -0.057 4.057 17 H 0.109 0.891 18 C 0.005 3.995 19 N -0.353 5.353 20 C 0.311 3.689 21 O -0.473 6.473 22 C -0.088 4.088 23 N -0.308 5.308 24 H 0.066 0.934 25 H 0.115 0.885 26 H 0.090 0.910 27 H 0.130 0.870 28 H 0.051 0.949 29 H 0.107 0.893 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.035 0.965 33 H 0.074 0.926 34 H 0.139 0.861 35 H 0.092 0.908 36 H 0.251 0.749 37 H 0.145 0.855 38 H 0.109 0.891 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -7.278 -7.405 -14.317 17.685 hybrid contribution 0.252 1.049 0.844 1.370 sum -7.026 -6.356 -13.473 16.471 Atomic orbital electron populations 1.22195 0.92978 1.03268 1.03411 1.21530 0.96118 0.93538 0.86839 1.22089 1.00161 0.96341 1.02583 1.48118 1.49264 1.26365 1.08042 1.19294 0.95801 0.93414 0.81231 1.21501 1.08837 1.22849 1.02359 0.94652 1.25744 0.99070 0.94668 0.99155 1.70041 1.37078 1.30142 1.21504 0.85871 0.80804 0.77749 0.79497 1.20570 1.20691 1.15906 1.20537 0.78726 0.80497 0.90796 1.90696 1.53870 1.59250 1.40883 1.21812 0.94208 0.95869 0.93813 0.89104 1.21488 0.95250 0.96383 0.86384 1.45374 1.07351 1.58108 1.24484 1.20380 0.85072 0.78301 0.85161 1.90757 1.84314 1.43317 1.28921 1.22189 0.95697 1.03481 0.87431 1.60670 1.09466 1.47068 1.13626 0.93432 0.88528 0.90997 0.87008 0.94882 0.89254 0.93520 0.93050 0.96471 0.92605 0.86138 0.90769 0.74909 0.85503 0.89090 0.81841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.07 9.17 71.98 0.66 -2.41 16 2 C 0.12 2.99 2.65 44.99 0.12 3.11 16 3 C -0.15 -4.40 8.47 71.98 0.61 -3.79 16 4 N -0.59 -20.48 2.39 -802.17 -1.91 -22.40 16 5 C 0.22 9.96 3.66 85.63 0.31 10.27 16 6 C -0.52 -28.19 8.38 25.60 0.21 -27.97 16 7 H 0.04 2.16 7.87 -2.91 -0.02 2.14 16 8 C 0.01 0.63 5.47 84.66 0.46 1.10 16 9 N -0.95 -58.05 13.96 21.45 0.30 -57.75 16 10 Si 0.94 42.77 27.47 68.60 1.88 44.66 16 11 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 12 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 13 H -0.24 -9.51 6.54 99.48 0.65 -8.86 16 14 C 0.51 17.90 6.80 87.66 0.60 18.50 16 15 O -0.57 -26.02 15.98 -3.03 -0.05 -26.06 16 16 C 0.06 1.36 2.02 44.12 0.09 1.45 16 17 H 0.09 1.85 6.59 -2.39 -0.02 1.83 16 18 C 0.13 2.36 6.48 86.47 0.56 2.92 16 19 N -0.70 -12.63 5.52 -466.09 -2.57 -15.20 16 20 C 0.52 12.16 7.81 87.69 0.69 12.85 16 21 O -0.59 -17.82 17.83 -3.05 -0.05 -17.88 16 22 C 0.04 0.88 6.67 85.42 0.57 1.45 16 23 N -0.67 -16.85 6.28 -499.68 -3.14 -19.99 16 24 H 0.05 1.13 6.66 -2.39 -0.02 1.12 16 25 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.07 1.15 7.97 -2.39 -0.02 1.13 16 27 H 0.11 1.96 4.68 -2.39 -0.01 1.95 16 28 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.05 1.68 6.92 -2.38 -0.02 1.66 16 31 H 0.05 2.11 5.48 -2.38 -0.01 2.09 16 32 H 0.02 0.84 6.85 -2.39 -0.02 0.82 16 33 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 34 H 0.12 1.43 6.80 -2.39 -0.02 1.42 16 35 H 0.07 1.55 8.11 -2.39 -0.02 1.53 16 36 H 0.41 5.89 8.84 -92.70 -0.82 5.07 16 37 H 0.13 2.39 8.14 -2.39 -0.02 2.37 16 38 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.36 9.67 8.53 -89.70 -0.77 8.91 16 Total: -1.00 -76.80 312.07 -1.21 -78.02 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: -0.55 Total: 19.13 kcal Atomic # 6 Polarization: 12.59 SS G_CDS: 4.88 Total: 17.47 kcal Atomic # 7 Polarization: -108.01 SS G_CDS: -7.32 Total: -115.33 kcal Atomic # 8 Polarization: -43.84 SS G_CDS: -0.10 Total: -43.94 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 1.88 Total: 44.66 kcal Total: -76.80 -1.21 -78.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230835392.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.387 kcal (2) G-P(sol) polarization free energy of solvation -76.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds