Wall clock time and date at job start Mon Mar 30 2020 05:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47144 * 2 1 4 4 N 1.46507 * 109.46817 * 119.99785 * 2 1 3 5 5 C 1.46497 * 120.00078 * 299.99903 * 4 2 1 6 6 C 1.50694 * 109.47115 * 90.00278 * 5 4 2 7 7 H 1.08000 * 120.00563 * 359.97438 * 6 5 4 8 8 C 1.37885 * 119.99902 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99913 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99766 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47353 * 269.99586 * 10 8 6 12 12 H 1.48501 * 109.47293 * 30.00037 * 10 8 6 13 13 H 1.48504 * 109.46680 * 149.99835 * 10 8 6 14 14 C 1.34777 * 119.99744 * 120.00001 * 4 2 1 15 15 O 1.21279 * 119.99709 * 179.97438 * 14 4 2 16 16 C 1.50698 * 119.99969 * 359.97438 * 14 4 2 17 17 H 1.08999 * 109.59488 * 319.69583 * 16 14 4 18 18 C 1.52977 * 109.59725 * 79.99926 * 16 14 4 19 19 N 1.46005 * 110.04515 * 170.06607 * 18 16 14 20 20 C 1.33717 * 122.92601 * 341.83386 * 19 18 16 21 21 O 1.21280 * 118.62718 * 181.68820 * 20 19 18 22 22 C 1.50252 * 122.75137 * 1.71326 * 20 19 18 23 23 N 1.46914 * 109.97165 * 342.76071 * 22 20 19 24 24 H 1.09001 * 109.47115 * 300.00211 * 1 2 3 25 25 H 1.09000 * 109.47083 * 60.00287 * 1 2 3 26 26 H 1.09004 * 109.47549 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.46632 * 239.99388 * 2 1 3 28 28 H 1.09001 * 109.46884 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.46896 * 299.99828 * 3 2 1 30 30 H 1.09001 * 109.47287 * 59.99894 * 3 2 1 31 31 H 1.09007 * 109.47078 * 329.99917 * 5 4 2 32 32 H 1.09003 * 109.46733 * 210.00639 * 5 4 2 33 33 H 0.97001 * 119.99646 * 179.97438 * 9 8 6 34 34 H 1.09004 * 109.37574 * 290.23902 * 18 16 14 35 35 H 1.09001 * 109.37552 * 50.00393 * 18 16 14 36 36 H 0.96999 * 118.54020 * 161.82042 * 19 18 16 37 37 H 1.09004 * 109.38505 * 102.92730 * 22 20 19 38 38 H 1.08994 * 109.39319 * 222.61569 * 22 20 19 39 39 H 1.00900 * 111.01477 * 286.95919 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 1.6644 -0.1900 2.5268 6 6 0.3830 -0.8387 2.9830 7 1 -0.1180 -1.5521 2.3455 8 6 -0.1505 -0.5205 4.2140 9 7 0.4592 0.3486 4.9902 10 14 -1.7393 -1.3241 4.7792 11 1 -2.8941 -0.4987 4.3428 12 1 -1.8471 -2.6803 4.1841 13 1 -1.7397 -1.4320 6.2604 14 6 2.7931 -1.7864 1.0726 15 8 3.1977 -2.3579 2.0629 16 6 3.1567 -2.3016 -0.2961 17 1 2.2918 -2.2295 -0.9555 18 6 4.3081 -1.4721 -0.8674 19 7 4.8245 -2.1009 -2.0797 20 6 4.5924 -3.3806 -2.3901 21 8 5.0855 -3.8317 -3.4022 22 6 3.7459 -4.2832 -1.5378 23 7 3.5894 -3.7050 -0.1964 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8932 -0.5139 -0.8899 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.5295 0.8908 2.4844 32 1 2.4629 -0.4292 3.2292 33 1 0.0837 0.5727 5.8560 34 1 3.9492 -0.4704 -1.1043 35 1 5.1067 -1.4047 -0.1286 36 1 5.3596 -1.5664 -2.6871 37 1 2.7649 -4.4003 -1.9984 38 1 4.2249 -5.2590 -1.4574 39 1 4.4447 -3.7829 0.3333 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230835424.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:26 Heat of formation + Delta-G solvation = -61.519275 kcal Electronic energy + Delta-G solvation = -21767.568187 eV Core-core repulsion = 18517.345009 eV Total energy + Delta-G solvation = -3250.223178 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.76934 -39.21206 -36.74303 -36.00221 -33.83855 -32.88400 -30.98200 -30.40731 -27.36099 -26.85538 -25.66746 -24.30015 -22.60942 -21.42858 -20.09175 -18.64250 -17.53346 -16.95296 -16.58478 -16.45163 -15.68423 -15.23079 -14.84476 -14.59495 -14.20144 -14.14612 -13.79977 -13.61072 -13.17029 -12.81175 -12.41734 -12.41454 -11.95231 -11.78036 -11.73308 -11.64904 -11.22590 -11.00075 -10.92141 -10.76828 -10.60353 -10.44817 -10.05894 -9.58954 -9.39412 -9.09195 -8.52574 -8.44425 -7.75809 -6.06288 -4.09383 2.35836 2.86301 3.20432 3.29015 3.36737 3.41359 3.53156 4.14764 4.33664 4.44018 4.61230 4.71362 4.83671 5.05324 5.14439 5.20825 5.28856 5.41458 5.43819 5.44656 5.58006 5.89519 6.02949 6.14135 6.28621 6.32965 6.49123 6.58049 6.89143 6.98243 7.02967 7.08233 7.39362 7.47890 7.90313 7.92086 8.21164 8.31157 8.84869 8.99797 9.54956 11.01923 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.026583 B = 0.005313 C = 0.004939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.047096 B = 5268.872190 C = 5667.287069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.129 3.871 3 C -0.163 4.163 4 N -0.588 5.588 5 C 0.247 3.753 6 C -0.519 4.519 7 H 0.059 0.941 8 C 0.061 3.939 9 N -0.896 5.896 10 Si 0.895 3.105 11 H -0.281 1.281 12 H -0.274 1.274 13 H -0.286 1.286 14 C 0.518 3.482 15 O -0.521 6.521 16 C 0.050 3.950 17 H 0.110 0.890 18 C 0.080 3.920 19 N -0.720 5.720 20 C 0.484 3.516 21 O -0.556 6.556 22 C 0.046 3.954 23 N -0.653 5.653 24 H 0.082 0.918 25 H 0.049 0.951 26 H 0.055 0.945 27 H 0.072 0.928 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.036 0.964 32 H 0.042 0.958 33 H 0.263 0.737 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.400 0.600 37 H 0.112 0.888 38 H 0.117 0.883 39 H 0.358 0.642 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.837 0.063 -13.338 14.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.025 3.975 3 C -0.221 4.221 4 N -0.321 5.321 5 C 0.128 3.872 6 C -0.558 4.558 7 H 0.077 0.923 8 C -0.141 4.141 9 N -0.535 5.535 10 Si 0.723 3.277 11 H -0.207 1.207 12 H -0.199 1.199 13 H -0.212 1.212 14 C 0.302 3.698 15 O -0.397 6.397 16 C -0.064 4.064 17 H 0.128 0.872 18 C -0.046 4.046 19 N -0.373 5.373 20 C 0.269 3.731 21 O -0.433 6.433 22 C -0.087 4.087 23 N -0.285 5.285 24 H 0.101 0.899 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.090 0.910 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.109 0.891 35 H 0.095 0.905 36 H 0.236 0.764 37 H 0.130 0.870 38 H 0.135 0.865 39 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 4.515 -0.777 -12.861 13.653 hybrid contribution -0.006 0.438 -0.138 0.459 sum 4.509 -0.339 -12.999 13.763 Atomic orbital electron populations 1.22152 0.94415 1.02594 1.02479 1.21081 0.95569 0.93126 0.87754 1.22189 1.00726 0.96406 1.02798 1.48342 1.48245 1.26633 1.08849 1.19278 0.96494 0.94566 0.76849 1.21422 1.07405 1.24853 1.02140 0.92277 1.24917 0.97640 0.95213 0.96323 1.69925 1.39425 1.33384 1.10754 0.86545 0.83366 0.79898 0.77925 1.20730 1.19865 1.21187 1.19623 0.80052 0.81136 0.89016 1.90697 1.54045 1.56203 1.38715 1.21983 0.97972 0.88704 0.97770 0.87214 1.22186 0.97528 0.97869 0.87030 1.45622 1.54855 1.11868 1.24963 1.21574 0.81485 0.83058 0.86950 1.90752 1.51190 1.73866 1.27529 1.22333 1.00709 0.97889 0.87744 1.60531 1.39425 1.15322 1.13222 0.89856 0.93203 0.92574 0.91013 0.92942 0.92146 0.90991 0.94631 0.93965 0.92782 0.89055 0.90453 0.76370 0.86973 0.86524 0.82157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 8.47 37.16 0.31 -2.08 16 2 C 0.13 1.85 2.64 -67.93 -0.18 1.67 16 3 C -0.16 -2.05 9.17 37.16 0.34 -1.71 16 4 N -0.59 -11.04 2.39 -167.47 -0.40 -11.44 16 5 C 0.25 5.93 4.59 -5.20 -0.02 5.91 16 6 C -0.52 -13.79 7.83 -34.44 -0.27 -14.06 16 7 H 0.06 1.58 7.63 -52.49 -0.40 1.18 16 8 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 9 N -0.90 -25.63 13.29 55.43 0.74 -24.89 16 10 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 13 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 14 C 0.52 9.63 6.92 -10.99 -0.08 9.55 16 15 O -0.52 -12.08 15.97 5.56 0.09 -11.99 16 16 C 0.05 0.66 2.01 -68.72 -0.14 0.52 16 17 H 0.11 1.35 6.59 -51.93 -0.34 1.01 16 18 C 0.08 0.84 6.38 -4.32 -0.03 0.81 16 19 N -0.72 -7.32 5.52 -61.07 -0.34 -7.65 16 20 C 0.48 5.90 7.81 -11.67 -0.09 5.81 16 21 O -0.56 -8.68 17.82 5.56 0.10 -8.58 16 22 C 0.05 0.50 6.68 -5.19 -0.03 0.46 16 23 N -0.65 -8.58 6.28 -109.26 -0.69 -9.27 16 24 H 0.08 1.51 6.92 -51.93 -0.36 1.15 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.07 0.83 4.67 -51.93 -0.24 0.59 16 28 H 0.05 0.60 7.97 -51.93 -0.41 0.19 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.07 1.07 6.66 -51.93 -0.35 0.72 16 31 H 0.04 0.86 6.43 -51.92 -0.33 0.53 16 32 H 0.04 1.17 7.42 -51.93 -0.39 0.78 16 33 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 34 H 0.09 0.81 6.79 -51.93 -0.35 0.46 16 35 H 0.08 0.84 8.11 -51.93 -0.42 0.42 16 36 H 0.40 3.53 8.84 -40.82 -0.36 3.17 16 37 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.12 1.12 8.14 -51.93 -0.42 0.69 16 39 H 0.36 4.73 8.54 -39.29 -0.34 4.39 16 LS Contribution 315.68 15.07 4.76 4.76 Total: -1.00 -32.80 315.68 -6.59 -39.38 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -5.54 Total: 4.96 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: -0.28 Total: 8.46 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: -0.69 Total: -53.25 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: 0.19 Total: -20.57 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.80 -6.59 -39.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230835424.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.134 kcal (2) G-P(sol) polarization free energy of solvation -32.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds