Wall clock time and date at job start Mon Mar 30 2020 05:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47144 * 2 1 4 4 N 1.46507 * 109.46817 * 119.99785 * 2 1 3 5 5 C 1.46497 * 120.00078 * 299.99903 * 4 2 1 6 6 C 1.50694 * 109.47115 * 90.00278 * 5 4 2 7 7 H 1.08000 * 120.00563 * 359.97438 * 6 5 4 8 8 C 1.37885 * 119.99902 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99913 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99766 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47353 * 269.99586 * 10 8 6 12 12 H 1.48501 * 109.47293 * 30.00037 * 10 8 6 13 13 H 1.48504 * 109.46680 * 149.99835 * 10 8 6 14 14 C 1.34777 * 119.99744 * 120.00001 * 4 2 1 15 15 O 1.21279 * 119.99709 * 179.97438 * 14 4 2 16 16 C 1.50698 * 119.99969 * 359.97438 * 14 4 2 17 17 H 1.08999 * 109.59488 * 319.69583 * 16 14 4 18 18 C 1.52977 * 109.59725 * 79.99926 * 16 14 4 19 19 N 1.46005 * 110.04515 * 170.06607 * 18 16 14 20 20 C 1.33717 * 122.92601 * 341.83386 * 19 18 16 21 21 O 1.21280 * 118.62718 * 181.68820 * 20 19 18 22 22 C 1.50252 * 122.75137 * 1.71326 * 20 19 18 23 23 N 1.46914 * 109.97165 * 342.76071 * 22 20 19 24 24 H 1.09001 * 109.47115 * 300.00211 * 1 2 3 25 25 H 1.09000 * 109.47083 * 60.00287 * 1 2 3 26 26 H 1.09004 * 109.47549 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.46632 * 239.99388 * 2 1 3 28 28 H 1.09001 * 109.46884 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.46896 * 299.99828 * 3 2 1 30 30 H 1.09001 * 109.47287 * 59.99894 * 3 2 1 31 31 H 1.09007 * 109.47078 * 329.99917 * 5 4 2 32 32 H 1.09003 * 109.46733 * 210.00639 * 5 4 2 33 33 H 0.97001 * 119.99646 * 179.97438 * 9 8 6 34 34 H 1.09004 * 109.37574 * 290.23902 * 18 16 14 35 35 H 1.09001 * 109.37552 * 50.00393 * 18 16 14 36 36 H 0.96999 * 118.54020 * 161.82042 * 19 18 16 37 37 H 1.09004 * 109.38505 * 102.92730 * 22 20 19 38 38 H 1.08994 * 109.39319 * 222.61569 * 22 20 19 39 39 H 1.00900 * 111.01477 * 286.95919 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 1.6644 -0.1900 2.5268 6 6 0.3830 -0.8387 2.9830 7 1 -0.1180 -1.5521 2.3455 8 6 -0.1505 -0.5205 4.2140 9 7 0.4592 0.3486 4.9902 10 14 -1.7393 -1.3241 4.7792 11 1 -2.8941 -0.4987 4.3428 12 1 -1.8471 -2.6803 4.1841 13 1 -1.7397 -1.4320 6.2604 14 6 2.7931 -1.7864 1.0726 15 8 3.1977 -2.3579 2.0629 16 6 3.1567 -2.3016 -0.2961 17 1 2.2918 -2.2295 -0.9555 18 6 4.3081 -1.4721 -0.8674 19 7 4.8245 -2.1009 -2.0797 20 6 4.5924 -3.3806 -2.3901 21 8 5.0855 -3.8317 -3.4022 22 6 3.7459 -4.2832 -1.5378 23 7 3.5894 -3.7050 -0.1964 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8932 -0.5139 -0.8899 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.5295 0.8908 2.4844 32 1 2.4629 -0.4292 3.2292 33 1 0.0837 0.5727 5.8560 34 1 3.9492 -0.4704 -1.1043 35 1 5.1067 -1.4047 -0.1286 36 1 5.3596 -1.5664 -2.6871 37 1 2.7649 -4.4003 -1.9984 38 1 4.2249 -5.2590 -1.4574 39 1 4.4447 -3.7829 0.3333 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230835424.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:26 Heat of formation + Delta-G solvation = -88.513042 kcal Electronic energy + Delta-G solvation = -21768.738724 eV Core-core repulsion = 18517.345009 eV Total energy + Delta-G solvation = -3251.393715 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.85613 -40.52423 -37.91091 -37.41066 -34.89002 -34.77114 -32.40671 -31.62095 -29.11829 -27.97924 -26.60509 -25.71689 -24.21077 -22.69480 -21.10405 -19.87708 -18.80434 -18.54295 -18.01182 -17.58854 -16.96941 -16.53040 -16.18648 -15.90503 -15.63844 -15.39018 -14.90557 -14.74831 -14.48007 -14.14784 -13.97715 -13.50306 -13.29510 -13.25083 -13.10153 -12.78707 -12.72411 -12.64492 -12.45241 -12.19021 -12.07344 -11.81623 -11.60578 -11.48373 -10.59511 -10.55664 -10.28949 -9.56911 -9.39276 -8.15920 -6.26316 1.38491 1.41195 1.41905 1.50823 1.69830 2.04382 2.22821 2.43591 3.07435 3.15052 3.33040 3.60612 3.63415 3.81549 4.01168 4.23296 4.31047 4.34885 4.39664 4.60594 4.61744 4.86030 4.91264 5.03264 5.08703 5.17285 5.26926 5.44111 5.50037 5.61131 5.67902 5.73258 5.91675 6.05644 6.07987 6.15793 6.77469 6.85251 7.02524 7.34831 7.50722 8.91127 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.026583 B = 0.005313 C = 0.004939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.047096 B = 5268.872190 C = 5667.287069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.123 3.877 3 C -0.159 4.159 4 N -0.591 5.591 5 C 0.264 3.736 6 C -0.523 4.523 7 H 0.053 0.947 8 C 0.009 3.991 9 N -0.929 5.929 10 Si 0.956 3.044 11 H -0.266 1.266 12 H -0.275 1.275 13 H -0.286 1.286 14 C 0.511 3.489 15 O -0.577 6.577 16 C 0.062 3.938 17 H 0.129 0.871 18 C 0.090 3.910 19 N -0.706 5.706 20 C 0.486 3.514 21 O -0.592 6.592 22 C 0.052 3.948 23 N -0.669 5.669 24 H 0.045 0.955 25 H 0.089 0.911 26 H 0.042 0.958 27 H 0.112 0.888 28 H 0.065 0.935 29 H 0.096 0.904 30 H 0.040 0.960 31 H 0.030 0.970 32 H -0.004 1.004 33 H 0.264 0.736 34 H 0.118 0.882 35 H 0.074 0.926 36 H 0.411 0.589 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.356 0.644 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.308 0.194 -15.809 16.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.020 3.980 3 C -0.217 4.217 4 N -0.322 5.322 5 C 0.143 3.857 6 C -0.562 4.562 7 H 0.071 0.929 8 C -0.190 4.190 9 N -0.570 5.570 10 Si 0.782 3.218 11 H -0.191 1.191 12 H -0.200 1.200 13 H -0.211 1.211 14 C 0.298 3.702 15 O -0.456 6.456 16 C -0.051 4.051 17 H 0.147 0.853 18 C -0.037 4.037 19 N -0.358 5.358 20 C 0.272 3.728 21 O -0.472 6.472 22 C -0.080 4.080 23 N -0.300 5.300 24 H 0.064 0.936 25 H 0.107 0.893 26 H 0.062 0.938 27 H 0.130 0.870 28 H 0.084 0.916 29 H 0.114 0.886 30 H 0.059 0.941 31 H 0.048 0.952 32 H 0.014 0.986 33 H 0.073 0.927 34 H 0.136 0.864 35 H 0.093 0.907 36 H 0.248 0.752 37 H 0.145 0.855 38 H 0.147 0.853 39 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 3.976 -0.608 -15.379 15.896 hybrid contribution 0.174 0.411 0.627 0.770 sum 4.150 -0.197 -14.752 15.326 Atomic orbital electron populations 1.22110 0.94954 1.01745 1.02541 1.21481 0.95208 0.94341 0.86949 1.22164 1.01579 0.94934 1.02992 1.48322 1.48304 1.27148 1.08407 1.18675 0.93916 0.94050 0.79027 1.21665 1.08058 1.24334 1.02124 0.92898 1.25719 1.00809 0.95833 0.96622 1.70038 1.41004 1.34790 1.11146 0.85585 0.80094 0.78910 0.77257 1.19129 1.19991 1.21136 1.20532 0.78819 0.80193 0.90685 1.90668 1.55982 1.57776 1.41210 1.21815 0.99819 0.89259 0.94241 0.85316 1.22097 0.96381 0.98264 0.86918 1.45476 1.54278 1.11401 1.24694 1.21726 0.81119 0.83505 0.86420 1.90749 1.52783 1.74567 1.29120 1.22389 1.01436 0.97947 0.86189 1.60514 1.39570 1.15367 1.14598 0.93610 0.89279 0.93841 0.87003 0.91631 0.88567 0.94120 0.95230 0.98579 0.92728 0.86421 0.90742 0.75167 0.85513 0.85300 0.82458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.40 8.47 71.98 0.61 -3.79 16 2 C 0.12 3.20 2.64 44.99 0.12 3.32 16 3 C -0.16 -3.57 9.17 71.98 0.66 -2.91 16 4 N -0.59 -22.05 2.39 -802.14 -1.91 -23.97 16 5 C 0.26 13.19 4.59 85.63 0.39 13.59 16 6 C -0.52 -28.52 7.83 25.60 0.20 -28.32 16 7 H 0.05 2.88 7.63 -2.91 -0.02 2.86 16 8 C 0.01 0.48 5.46 84.66 0.46 0.95 16 9 N -0.93 -54.72 13.29 21.45 0.28 -54.44 16 10 Si 0.96 44.21 29.54 68.60 2.03 46.24 16 11 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 12 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 13 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 14 C 0.51 18.84 6.92 87.66 0.61 19.45 16 15 O -0.58 -27.56 15.97 -3.03 -0.05 -27.61 16 16 C 0.06 1.51 2.01 44.11 0.09 1.60 16 17 H 0.13 2.66 6.59 -2.39 -0.02 2.64 16 18 C 0.09 1.58 6.38 86.46 0.55 2.13 16 19 N -0.71 -12.04 5.52 -466.11 -2.57 -14.61 16 20 C 0.49 10.57 7.81 87.68 0.69 11.25 16 21 O -0.59 -17.27 17.82 -3.03 -0.05 -17.33 16 22 C 0.05 1.00 6.68 85.41 0.57 1.57 16 23 N -0.67 -16.45 6.28 -499.58 -3.14 -19.59 16 24 H 0.04 1.64 6.92 -2.39 -0.02 1.62 16 25 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.11 2.06 4.67 -2.39 -0.01 2.05 16 28 H 0.06 1.30 7.97 -2.39 -0.02 1.28 16 29 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.04 1.18 6.66 -2.39 -0.02 1.16 16 31 H 0.03 1.50 6.43 -2.38 -0.02 1.49 16 32 H 0.00 -0.23 7.42 -2.39 -0.02 -0.25 16 33 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 34 H 0.12 1.53 6.79 -2.39 -0.02 1.51 16 35 H 0.07 1.44 8.11 -2.39 -0.02 1.42 16 36 H 0.41 5.82 8.84 -92.71 -0.82 5.00 16 37 H 0.13 2.10 8.14 -2.38 -0.02 2.08 16 38 H 0.13 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.36 9.09 8.54 -89.69 -0.77 8.32 16 Total: -1.00 -74.84 315.68 -0.97 -75.81 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -0.50 Total: 16.65 kcal Atomic # 6 Polarization: 13.90 SS G_CDS: 4.95 Total: 18.85 kcal Atomic # 7 Polarization: -105.27 SS G_CDS: -7.34 Total: -112.60 kcal Atomic # 8 Polarization: -44.84 SS G_CDS: -0.10 Total: -44.94 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -74.84 -0.97 -75.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230835424.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.706 kcal (2) G-P(sol) polarization free energy of solvation -74.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds