Wall clock time and date at job start Mon Mar 30 2020 04:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.47556 * 2 1 4 4 C 1.46497 * 119.99878 * 267.82940 * 3 2 1 5 5 C 1.50694 * 109.47398 * 269.72595 * 4 3 2 6 6 H 1.08006 * 120.00187 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00222 * 180.02562 * 5 4 3 8 8 N 1.31507 * 120.00312 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00023 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47163 * 89.99998 * 9 7 5 11 11 H 1.48501 * 109.47290 * 210.00101 * 9 7 5 12 12 H 1.48499 * 109.47238 * 329.99886 * 9 7 5 13 13 C 1.34774 * 119.99934 * 87.55356 * 3 2 1 14 14 O 1.21282 * 119.99643 * 354.69794 * 13 3 2 15 15 C 1.50697 * 119.99745 * 174.69444 * 13 3 2 16 16 H 1.08997 * 110.43636 * 34.69186 * 15 13 3 17 17 C 1.54881 * 110.48935 * 272.14489 * 15 13 3 18 18 C 1.54888 * 102.74961 * 203.38339 * 17 15 13 19 19 C 1.54264 * 104.19582 * 37.94111 * 18 17 15 20 20 H 1.08994 * 110.03117 * 95.72995 * 19 18 17 21 21 C 1.50701 * 110.03118 * 217.10664 * 19 18 17 22 22 O 1.20832 * 119.99897 * 118.54667 * 21 19 18 23 23 O 1.34230 * 120.00377 * 298.54620 * 21 19 18 24 24 C 1.53868 * 106.60057 * 336.39198 * 19 18 17 25 25 H 1.09004 * 109.46649 * 295.82333 * 1 2 3 26 26 H 1.09001 * 109.46689 * 55.81925 * 1 2 3 27 27 H 1.08995 * 109.47552 * 175.81957 * 1 2 3 28 28 H 1.08999 * 109.46421 * 239.99670 * 2 1 3 29 29 H 1.08998 * 109.47202 * 120.00440 * 2 1 3 30 30 H 1.09010 * 109.47316 * 29.72552 * 4 3 2 31 31 H 1.09001 * 109.47205 * 149.72141 * 4 3 2 32 32 H 0.97000 * 120.00514 * 179.97438 * 8 7 5 33 33 H 1.09001 * 110.75715 * 321.69556 * 17 15 13 34 34 H 1.09000 * 110.75646 * 84.88146 * 17 15 13 35 35 H 1.08997 * 110.48963 * 156.62116 * 18 17 15 36 36 H 1.09002 * 110.48555 * 279.26645 * 18 17 15 37 37 H 0.96698 * 117.00338 * 180.02562 * 23 21 19 38 38 H 1.09003 * 110.03275 * 240.71593 * 24 19 18 39 39 H 1.09000 * 110.03434 * 119.28602 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.3080 2.0557 -1.2678 5 6 3.7476 1.8193 -1.6454 6 1 4.3835 1.2262 -1.0048 7 6 4.2533 2.3609 -2.8081 8 7 3.4792 3.0835 -3.5879 9 14 6.0380 2.0684 -3.2757 10 1 6.1385 0.8368 -4.0992 11 1 6.5419 3.2276 -4.0552 12 1 6.8525 1.9083 -2.0444 13 6 2.1962 2.0331 1.1661 14 8 1.8617 1.5122 2.2091 15 6 2.8106 3.4091 1.1740 16 1 2.5069 3.9666 0.2880 17 6 4.3545 3.3131 1.2514 18 6 4.7528 4.6853 1.8491 19 6 3.6490 4.9814 2.8853 20 1 3.9752 4.6697 3.8775 21 6 3.3245 6.4530 2.8877 22 8 2.2113 6.8266 2.6027 23 8 4.2720 7.3488 3.2063 24 6 2.4141 4.1700 2.4562 25 1 -0.3633 0.4477 0.9251 26 1 -0.3633 0.5774 -0.8502 27 1 -0.3634 -1.0248 -0.0749 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.6580 1.6585 -2.0475 31 1 2.1321 3.1259 -1.1585 32 1 3.8351 3.4649 -4.4057 33 1 4.6584 2.5011 1.9120 34 1 4.7836 3.1820 0.2580 35 1 5.7259 4.6214 2.3359 36 1 4.7629 5.4509 1.0732 37 1 4.0164 8.2813 3.1944 38 1 1.5800 4.8406 2.2496 39 1 2.1405 3.4637 3.2400 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233470967.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:03 Heat of formation + Delta-G solvation = -147.614835 kcal Electronic energy + Delta-G solvation = -21587.745514 eV Core-core repulsion = 18301.496202 eV Total energy + Delta-G solvation = -3286.249312 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.52764 -39.31825 -36.84119 -35.96283 -35.13242 -32.79525 -30.91090 -29.12531 -28.48919 -26.99587 -23.86799 -23.08818 -22.42087 -20.71967 -19.70096 -18.14674 -17.91997 -16.99228 -16.51643 -16.27344 -15.83921 -15.37709 -14.54928 -14.43410 -13.90573 -13.73746 -13.20907 -13.14286 -12.79644 -12.40640 -12.06401 -11.73972 -11.61813 -11.49107 -11.46976 -11.42859 -11.09189 -10.95696 -10.86284 -10.79935 -10.52240 -10.39912 -10.20553 -10.19687 -9.98852 -9.71748 -8.94531 -8.54702 -7.70187 -6.19714 -4.26582 2.27241 3.08229 3.20132 3.28224 3.29557 3.42413 3.95567 4.30993 4.66737 4.82398 5.07805 5.13133 5.40472 5.53655 5.66511 5.70999 5.75767 5.80643 5.84225 5.89420 5.93725 6.01401 6.16010 6.27670 6.37977 6.44428 6.46081 6.55859 6.64360 6.68051 6.81750 6.85214 7.21869 7.56555 7.75023 7.93649 8.04906 8.37289 8.78820 9.05198 9.40435 10.86884 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.013772 B = 0.007314 C = 0.005365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.584683 B = 3827.277260 C = 5218.156223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.117 3.883 3 N -0.594 5.594 4 C 0.235 3.765 5 C -0.533 4.533 6 H 0.062 0.938 7 C 0.065 3.935 8 N -0.890 5.890 9 Si 0.892 3.108 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.272 1.272 13 C 0.524 3.476 14 O -0.577 6.577 15 C -0.105 4.105 16 H 0.103 0.897 17 C -0.107 4.107 18 C -0.108 4.108 19 C -0.083 4.083 20 H 0.109 0.891 21 C 0.484 3.516 22 O -0.514 6.514 23 O -0.517 6.517 24 C -0.112 4.112 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.035 0.965 31 H 0.039 0.961 32 H 0.265 0.735 33 H 0.067 0.933 34 H 0.102 0.898 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.405 0.595 38 H 0.086 0.914 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.286 3.365 9.068 9.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.007 4.007 3 N -0.324 5.324 4 C 0.116 3.884 5 C -0.572 4.572 6 H 0.081 0.919 7 C -0.138 4.138 8 N -0.528 5.528 9 Si 0.720 3.280 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.196 1.196 13 C 0.313 3.687 14 O -0.459 6.459 15 C -0.126 4.126 16 H 0.121 0.879 17 C -0.144 4.144 18 C -0.146 4.146 19 C -0.103 4.103 20 H 0.127 0.873 21 C 0.327 3.673 22 O -0.402 6.402 23 O -0.328 6.328 24 C -0.150 4.150 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.121 0.879 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.263 0.737 38 H 0.105 0.895 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.906 2.875 9.315 9.791 hybrid contribution 0.787 0.592 -0.595 1.150 sum 1.693 3.466 8.720 9.536 Atomic orbital electron populations 1.22113 0.96983 1.01120 1.02016 1.21219 0.93417 0.83881 1.02164 1.48244 1.62876 1.13250 1.07981 1.19472 0.96508 0.93118 0.79345 1.21468 0.95823 1.33082 1.06799 0.91933 1.24934 0.97942 0.94853 0.96055 1.69918 1.35884 1.33636 1.13378 0.86583 0.84775 0.77880 0.78782 1.20589 1.21113 1.19625 1.20280 0.77710 0.87568 0.83169 1.90552 1.53389 1.69552 1.32359 1.22027 0.97058 0.94063 0.99438 0.87859 1.22482 0.92989 0.95605 1.03355 1.22337 0.96689 0.98686 0.96855 1.21726 0.99349 0.86231 1.02948 0.87291 1.23645 0.81977 0.90002 0.71686 1.90692 1.23582 1.81157 1.44757 1.84563 1.44780 1.21528 1.81975 1.22250 0.96125 0.98400 0.98216 0.92693 0.92643 0.92571 0.90530 0.91468 0.94712 0.94293 0.92526 0.91475 0.87908 0.90434 0.90866 0.73652 0.89538 0.89029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.67 10.23 37.16 0.38 -2.29 16 2 C 0.12 2.16 6.06 -4.04 -0.02 2.13 16 3 N -0.59 -12.40 2.46 -175.06 -0.43 -12.83 16 4 C 0.24 5.46 4.91 -5.20 -0.03 5.43 16 5 C -0.53 -13.14 7.84 -34.44 -0.27 -13.41 16 6 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 7 C 0.07 1.66 5.46 -17.82 -0.10 1.56 16 8 N -0.89 -23.93 13.29 55.43 0.74 -23.19 16 9 Si 0.89 19.82 29.54 -169.99 -5.02 14.80 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 12 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 13 C 0.52 10.83 6.82 -10.99 -0.07 10.76 16 14 O -0.58 -12.76 15.24 5.56 0.08 -12.68 16 15 C -0.10 -1.93 2.61 -90.12 -0.24 -2.16 16 16 H 0.10 2.04 6.05 -51.93 -0.31 1.73 16 17 C -0.11 -1.80 6.21 -24.74 -0.15 -1.95 16 18 C -0.11 -1.49 6.33 -25.07 -0.16 -1.65 16 19 C -0.08 -1.13 3.41 -90.66 -0.31 -1.44 16 20 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 21 C 0.48 6.66 7.48 36.01 0.27 6.93 16 22 O -0.51 -8.63 15.97 -18.75 -0.30 -8.93 16 23 O -0.52 -5.49 13.39 -39.26 -0.53 -6.02 16 24 C -0.11 -1.83 5.91 -25.61 -0.15 -1.98 16 25 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.08 1.39 8.06 -51.93 -0.42 0.97 16 29 H 0.07 1.24 7.58 -51.93 -0.39 0.85 16 30 H 0.03 0.86 8.07 -51.92 -0.42 0.44 16 31 H 0.04 0.94 5.97 -51.93 -0.31 0.63 16 32 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 33 H 0.07 1.12 8.05 -51.93 -0.42 0.70 16 34 H 0.10 1.96 6.65 -51.93 -0.35 1.61 16 35 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.07 1.04 7.85 -51.93 -0.41 0.63 16 37 H 0.41 2.57 9.10 45.56 0.41 2.98 16 38 H 0.09 1.49 6.40 -51.93 -0.33 1.15 16 39 H 0.09 1.55 6.78 -51.93 -0.35 1.19 16 LS Contribution 321.84 15.07 4.85 4.85 Total: -1.00 -29.79 321.84 -6.41 -36.20 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -4.95 Total: 5.87 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: -0.85 Total: 1.93 kcal Atomic # 7 Polarization: -36.32 SS G_CDS: 0.31 Total: -36.02 kcal Atomic # 8 Polarization: -26.89 SS G_CDS: -0.74 Total: -27.63 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.79 -6.41 -36.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233470967.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.416 kcal (2) G-P(sol) polarization free energy of solvation -29.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds