Wall clock time and date at job start Mon Mar 30 2020 04:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.47556 * 2 1 4 4 C 1.46497 * 119.99878 * 267.82940 * 3 2 1 5 5 C 1.50694 * 109.47398 * 269.72595 * 4 3 2 6 6 H 1.08006 * 120.00187 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00222 * 180.02562 * 5 4 3 8 8 N 1.31507 * 120.00312 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00023 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47163 * 89.99998 * 9 7 5 11 11 H 1.48501 * 109.47290 * 210.00101 * 9 7 5 12 12 H 1.48499 * 109.47238 * 329.99886 * 9 7 5 13 13 C 1.34774 * 119.99934 * 87.55356 * 3 2 1 14 14 O 1.21282 * 119.99643 * 354.69794 * 13 3 2 15 15 C 1.50697 * 119.99745 * 174.69444 * 13 3 2 16 16 H 1.08997 * 110.43636 * 34.69186 * 15 13 3 17 17 C 1.54881 * 110.48935 * 272.14489 * 15 13 3 18 18 C 1.54888 * 102.74961 * 203.38339 * 17 15 13 19 19 C 1.54264 * 104.19582 * 37.94111 * 18 17 15 20 20 H 1.08994 * 110.03117 * 95.72995 * 19 18 17 21 21 C 1.50701 * 110.03118 * 217.10664 * 19 18 17 22 22 O 1.20832 * 119.99897 * 118.54667 * 21 19 18 23 23 O 1.34230 * 120.00377 * 298.54620 * 21 19 18 24 24 C 1.53868 * 106.60057 * 336.39198 * 19 18 17 25 25 H 1.09004 * 109.46649 * 295.82333 * 1 2 3 26 26 H 1.09001 * 109.46689 * 55.81925 * 1 2 3 27 27 H 1.08995 * 109.47552 * 175.81957 * 1 2 3 28 28 H 1.08999 * 109.46421 * 239.99670 * 2 1 3 29 29 H 1.08998 * 109.47202 * 120.00440 * 2 1 3 30 30 H 1.09010 * 109.47316 * 29.72552 * 4 3 2 31 31 H 1.09001 * 109.47205 * 149.72141 * 4 3 2 32 32 H 0.97000 * 120.00514 * 179.97438 * 8 7 5 33 33 H 1.09001 * 110.75715 * 321.69556 * 17 15 13 34 34 H 1.09000 * 110.75646 * 84.88146 * 17 15 13 35 35 H 1.08997 * 110.48963 * 156.62116 * 18 17 15 36 36 H 1.09002 * 110.48555 * 279.26645 * 18 17 15 37 37 H 0.96698 * 117.00338 * 180.02562 * 23 21 19 38 38 H 1.09003 * 110.03275 * 240.71593 * 24 19 18 39 39 H 1.09000 * 110.03434 * 119.28602 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.3080 2.0557 -1.2678 5 6 3.7476 1.8193 -1.6454 6 1 4.3835 1.2262 -1.0048 7 6 4.2533 2.3609 -2.8081 8 7 3.4792 3.0835 -3.5879 9 14 6.0380 2.0684 -3.2757 10 1 6.1385 0.8368 -4.0992 11 1 6.5419 3.2276 -4.0552 12 1 6.8525 1.9083 -2.0444 13 6 2.1962 2.0331 1.1661 14 8 1.8617 1.5122 2.2091 15 6 2.8106 3.4091 1.1740 16 1 2.5069 3.9666 0.2880 17 6 4.3545 3.3131 1.2514 18 6 4.7528 4.6853 1.8491 19 6 3.6490 4.9814 2.8853 20 1 3.9752 4.6697 3.8775 21 6 3.3245 6.4530 2.8877 22 8 2.2113 6.8266 2.6027 23 8 4.2720 7.3488 3.2063 24 6 2.4141 4.1700 2.4562 25 1 -0.3633 0.4477 0.9251 26 1 -0.3633 0.5774 -0.8502 27 1 -0.3634 -1.0248 -0.0749 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.6580 1.6585 -2.0475 31 1 2.1321 3.1259 -1.1585 32 1 3.8351 3.4649 -4.4057 33 1 4.6584 2.5011 1.9120 34 1 4.7836 3.1820 0.2580 35 1 5.7259 4.6214 2.3359 36 1 4.7629 5.4509 1.0732 37 1 4.0164 8.2813 3.1944 38 1 1.5800 4.8406 2.2496 39 1 2.1405 3.4637 3.2400 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233470967.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:03 Heat of formation + Delta-G solvation = -165.681650 kcal Electronic energy + Delta-G solvation = -21588.528950 eV Core-core repulsion = 18301.496202 eV Total energy + Delta-G solvation = -3287.032748 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.71803 -40.81333 -38.11566 -37.03348 -36.85267 -34.68028 -32.43022 -30.48967 -29.78634 -28.85082 -25.20479 -24.95207 -23.73247 -22.08245 -20.89381 -19.59193 -19.13252 -18.51492 -18.21680 -17.70597 -17.27613 -16.71761 -16.35792 -15.87474 -15.29725 -15.11889 -14.55929 -14.41814 -14.26515 -14.20786 -13.61005 -13.23542 -13.13442 -13.06342 -12.77253 -12.64965 -12.61482 -12.52940 -12.27697 -12.17840 -12.09186 -11.79804 -11.71621 -11.66474 -11.46705 -11.34255 -10.67774 -10.44600 -9.44476 -8.15883 -6.29050 1.20724 1.44189 1.46987 1.55704 1.76203 2.12274 2.32802 2.48424 3.14804 3.40471 3.58619 3.80346 4.09346 4.29464 4.35754 4.40971 4.42841 4.46543 4.51250 4.55656 4.59265 4.72431 4.82564 4.97077 5.01430 5.03654 5.12769 5.17209 5.23915 5.29756 5.37209 5.39441 5.64129 5.70741 5.89097 6.09519 6.60541 6.85642 7.01699 7.33478 7.45064 8.90125 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.013772 B = 0.007314 C = 0.005365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.584683 B = 3827.277260 C = 5218.156223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.110 3.890 3 N -0.599 5.599 4 C 0.251 3.749 5 C -0.531 4.531 6 H 0.060 0.940 7 C 0.022 3.978 8 N -0.923 5.923 9 Si 0.952 3.048 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.262 1.262 13 C 0.520 3.480 14 O -0.592 6.592 15 C -0.107 4.107 16 H 0.083 0.917 17 C -0.103 4.103 18 C -0.098 4.098 19 C -0.079 4.079 20 H 0.140 0.860 21 C 0.492 3.508 22 O -0.551 6.551 23 O -0.505 6.505 24 C -0.105 4.105 25 H 0.043 0.957 26 H 0.048 0.952 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.018 0.982 31 H 0.025 0.975 32 H 0.266 0.734 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.109 0.891 36 H 0.067 0.933 37 H 0.426 0.574 38 H 0.073 0.927 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.844 3.432 10.145 11.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.013 4.013 3 N -0.329 5.329 4 C 0.130 3.870 5 C -0.569 4.569 6 H 0.078 0.922 7 C -0.178 4.178 8 N -0.563 5.563 9 Si 0.777 3.223 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.186 1.186 13 C 0.309 3.691 14 O -0.475 6.475 15 C -0.128 4.128 16 H 0.101 0.899 17 C -0.141 4.141 18 C -0.135 4.135 19 C -0.098 4.098 20 H 0.158 0.842 21 C 0.336 3.664 22 O -0.442 6.442 23 O -0.318 6.318 24 C -0.143 4.143 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.106 0.894 28 H 0.097 0.903 29 H 0.087 0.913 30 H 0.036 0.964 31 H 0.043 0.957 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.127 0.873 36 H 0.086 0.914 37 H 0.288 0.712 38 H 0.091 0.909 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.479 2.948 10.411 11.101 hybrid contribution 0.273 0.566 -0.911 1.107 sum 2.752 3.514 9.500 10.496 Atomic orbital electron populations 1.22018 0.95169 1.02940 1.01051 1.21404 0.94951 0.82637 1.02286 1.48284 1.63095 1.14176 1.07309 1.19119 0.95690 0.92350 0.79837 1.21583 0.96232 1.32497 1.06612 0.92211 1.25624 1.01546 0.94616 0.96042 1.70023 1.37611 1.34758 1.13865 0.85644 0.80459 0.77542 0.78643 1.20486 1.21063 1.18585 1.20668 0.77345 0.88300 0.82761 1.90533 1.54096 1.70212 1.32618 1.22035 0.98301 0.92694 0.99763 0.89928 1.22405 0.91409 0.97869 1.02389 1.22288 0.98168 0.96290 0.96782 1.21678 0.97621 0.86141 1.04339 0.84245 1.23537 0.81639 0.90376 0.70824 1.90694 1.25197 1.81728 1.46596 1.84500 1.43440 1.22848 1.81004 1.22120 0.97251 0.98108 0.96803 0.93807 0.93306 0.89396 0.90302 0.91336 0.96431 0.95745 0.92522 0.91058 0.90301 0.87277 0.91391 0.71219 0.90869 0.89536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.90 10.23 71.98 0.74 -4.17 16 2 C 0.11 4.04 6.06 86.38 0.52 4.57 16 3 N -0.60 -25.39 2.46 -826.16 -2.03 -27.42 16 4 C 0.25 11.94 4.91 85.63 0.42 12.36 16 5 C -0.53 -26.36 7.84 25.60 0.20 -26.16 16 6 H 0.06 2.97 7.81 -2.91 -0.02 2.94 16 7 C 0.02 1.11 5.46 84.66 0.46 1.57 16 8 N -0.92 -50.20 13.29 21.45 0.28 -49.92 16 9 Si 0.95 40.28 29.54 68.60 2.03 42.30 16 10 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 11 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 12 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 13 C 0.52 21.71 6.82 87.66 0.60 22.30 16 14 O -0.59 -26.15 15.24 -3.04 -0.05 -26.20 16 15 C -0.11 -3.97 2.61 -10.47 -0.03 -4.00 16 16 H 0.08 3.41 6.05 -2.39 -0.01 3.39 16 17 C -0.10 -3.39 6.21 31.88 0.20 -3.19 16 18 C -0.10 -2.48 6.33 31.67 0.20 -2.28 16 19 C -0.08 -1.97 3.41 -10.82 -0.04 -2.01 16 20 H 0.14 2.69 8.14 -2.39 -0.02 2.67 16 21 C 0.49 12.57 7.48 71.24 0.53 13.10 16 22 O -0.55 -18.12 15.97 21.95 0.35 -17.77 16 23 O -0.50 -9.16 13.39 -51.42 -0.69 -9.85 16 24 C -0.10 -3.38 5.91 31.32 0.19 -3.19 16 25 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.05 1.60 8.14 -2.39 -0.02 1.59 16 27 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.08 2.83 8.06 -2.39 -0.02 2.81 16 29 H 0.07 2.50 7.58 -2.39 -0.02 2.48 16 30 H 0.02 0.89 8.07 -2.38 -0.02 0.87 16 31 H 0.02 1.24 5.97 -2.39 -0.01 1.23 16 32 H 0.27 13.79 8.31 -92.71 -0.77 13.02 16 33 H 0.07 2.27 8.05 -2.39 -0.02 2.25 16 34 H 0.08 2.99 6.65 -2.39 -0.02 2.97 16 35 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.07 1.81 7.85 -2.39 -0.02 1.79 16 37 H 0.43 4.12 9.10 -74.06 -0.67 3.45 16 38 H 0.07 2.55 6.40 -2.39 -0.02 2.54 16 39 H 0.09 2.87 6.78 -2.39 -0.02 2.86 16 Total: -1.00 -63.76 321.84 4.27 -59.48 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: 0.39 Total: 20.47 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: 3.99 Total: 8.91 kcal Atomic # 7 Polarization: -75.59 SS G_CDS: -1.75 Total: -77.34 kcal Atomic # 8 Polarization: -53.43 SS G_CDS: -0.38 Total: -53.82 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 2.03 Total: 42.30 kcal Total: -63.76 4.27 -59.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233470967.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.199 kcal (2) G-P(sol) polarization free energy of solvation -63.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds