Wall clock time and date at job start Mon Mar 30 2020 05:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.39643 * 2 1 4 4 C 1.54776 * 109.43480 * 240.11552 * 2 1 3 5 5 N 1.41443 * 109.98124 * 170.19866 * 4 2 1 6 6 C 1.46903 * 111.00154 * 191.68569 * 5 4 2 7 7 C 1.46193 * 116.34825 * 63.47896 * 5 4 2 8 8 C 1.51278 * 109.09541 * 272.96644 * 7 5 4 9 9 C 1.53805 * 109.62841 * 92.41651 * 8 7 5 10 10 N 1.44880 * 109.43660 * 119.89233 * 2 1 3 11 11 C 1.34783 * 118.74706 * 29.76712 * 10 2 1 12 12 O 1.21439 * 119.99428 * 7.60545 * 11 10 2 13 13 C 1.48833 * 120.00055 * 187.60336 * 11 10 2 14 14 O 1.21494 * 119.99756 * 6.47655 * 13 11 10 15 15 N 1.34769 * 119.99767 * 186.47785 * 13 11 10 16 16 C 1.36118 * 119.99867 * 180.02562 * 15 13 11 17 17 H 1.08003 * 120.00147 * 359.97438 * 16 15 13 18 18 C 1.39589 * 119.99945 * 179.97438 * 16 15 13 19 19 N 1.31010 * 120.00206 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99950 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47195 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47265 * 119.99923 * 20 18 16 23 23 H 1.48501 * 109.46875 * 240.00327 * 20 18 16 24 24 H 1.08999 * 109.46885 * 163.25369 * 1 2 3 25 25 H 1.08997 * 109.47377 * 283.25549 * 1 2 3 26 26 H 1.08999 * 109.47034 * 43.25682 * 1 2 3 27 27 H 1.08995 * 109.38600 * 290.35553 * 4 2 1 28 28 H 1.09004 * 109.38301 * 50.14442 * 4 2 1 29 29 H 1.09000 * 109.47299 * 59.99356 * 6 5 4 30 30 H 1.08997 * 109.47113 * 179.97438 * 6 5 4 31 31 H 1.09000 * 109.46506 * 299.99758 * 6 5 4 32 32 H 1.09004 * 109.53645 * 32.84935 * 7 5 4 33 33 H 1.08996 * 109.53690 * 153.00691 * 7 5 4 34 34 H 1.09000 * 109.44330 * 212.45973 * 8 7 5 35 35 H 1.08995 * 109.44896 * 332.39828 * 8 7 5 36 36 H 1.08992 * 109.11518 * 80.42297 * 9 8 7 37 37 H 1.08996 * 109.11288 * 199.49093 * 9 8 7 38 38 H 0.97002 * 120.00138 * 359.97438 * 15 13 11 39 39 H 0.97002 * 120.00018 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8920 1.0281 0.0000 4 6 2.0450 -0.7272 -1.2655 5 7 3.4411 -0.5410 -1.3955 6 6 3.9096 -0.9779 -2.7175 7 6 4.2725 -1.1035 -0.3327 8 6 4.3971 -0.0924 0.7856 9 6 3.2948 -0.3383 1.8297 10 7 2.0121 -0.6809 1.1845 11 6 1.2605 -1.6643 1.7180 12 8 0.2725 -2.0590 1.1324 13 6 1.6414 -2.2665 3.0247 14 8 2.5586 -1.7946 3.6666 15 7 0.9687 -3.3351 3.4958 16 6 1.3167 -3.8855 4.6911 17 1 2.1321 -3.4661 5.2618 18 6 0.6197 -4.9920 5.1793 19 7 -0.3698 -5.5004 4.4873 20 14 1.0968 -5.7469 6.8200 21 1 2.2373 -4.9925 7.3990 22 1 -0.0605 -5.6853 7.7485 23 1 1.4933 -7.1634 6.6164 24 1 -0.3633 -0.9841 -0.2961 25 1 -0.3634 0.2356 1.0002 26 1 -0.3633 0.7484 -0.7042 27 1 1.8281 -1.7923 -1.1842 28 1 1.5439 -0.3221 -2.1447 29 1 3.4061 -0.3985 -3.4913 30 1 4.9861 -0.8233 -2.7908 31 1 3.6842 -2.0359 -2.8513 32 1 3.8098 -2.0137 0.0488 33 1 5.2615 -1.3353 -0.7278 34 1 5.3739 -0.1932 1.2587 35 1 4.2930 0.9134 0.3788 36 1 3.5968 -1.1582 2.4812 37 1 3.1635 0.5626 2.4290 38 1 0.2361 -3.7115 2.9834 39 1 -0.8539 -6.2696 4.8264 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235279530.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:02 Heat of formation + Delta-G solvation = -36.543037 kcal Electronic energy + Delta-G solvation = -21930.071996 eV Core-core repulsion = 18680.931869 eV Total energy + Delta-G solvation = -3249.140127 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.43898 -38.35234 -37.16787 -35.21922 -34.05108 -33.19313 -31.45804 -30.02430 -27.05870 -26.30621 -25.74748 -23.58029 -22.84411 -20.84174 -20.48875 -18.74187 -17.84360 -16.67139 -15.98048 -15.70683 -15.49432 -15.24683 -14.86542 -14.69681 -14.02598 -13.91179 -13.42712 -13.25955 -12.91378 -12.60115 -12.43271 -12.20381 -11.92109 -11.80984 -11.73313 -11.42420 -11.25835 -11.19587 -11.03854 -10.76332 -10.54228 -10.47060 -10.41191 -9.78443 -9.47551 -8.31455 -8.20563 -8.09370 -7.82243 -6.70090 -4.02462 2.43952 3.11956 3.14296 3.20528 3.36848 3.96006 4.02186 4.23092 4.78342 4.94391 5.02880 5.14742 5.24794 5.27034 5.38411 5.48208 5.54324 5.61804 5.76109 5.77462 5.79723 5.90710 5.94343 5.98873 6.08060 6.24450 6.29572 6.40063 6.63006 6.67734 7.14508 7.19038 7.28787 7.40313 7.71105 7.82827 8.32008 8.64516 8.94161 9.29617 9.82350 10.44538 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.029077 B = 0.005069 C = 0.004800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.744047 B = 5522.437214 C = 5831.579263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.148 3.852 3 H 0.083 0.917 4 C 0.065 3.935 5 N -0.569 5.569 6 C 0.034 3.966 7 C 0.072 3.928 8 C -0.132 4.132 9 C 0.082 3.918 10 N -0.588 5.588 11 C 0.509 3.491 12 O -0.542 6.542 13 C 0.390 3.610 14 O -0.587 6.587 15 N -0.497 5.497 16 C -0.306 4.306 17 H 0.114 0.886 18 C 0.031 3.969 19 N -0.868 5.868 20 Si 0.938 3.062 21 H -0.263 1.263 22 H -0.277 1.277 23 H -0.277 1.277 24 H 0.091 0.909 25 H 0.056 0.944 26 H 0.047 0.953 27 H 0.031 0.969 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.022 0.978 32 H 0.043 0.957 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.142 0.858 37 H 0.056 0.944 38 H 0.404 0.596 39 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.941 7.857 -9.971 14.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.044 3.956 3 H 0.101 0.899 4 C -0.065 4.065 5 N -0.293 5.293 6 C -0.113 4.113 7 C -0.055 4.055 8 C -0.170 4.170 9 C -0.039 4.039 10 N -0.322 5.322 11 C 0.296 3.704 12 O -0.419 6.419 13 C 0.175 3.825 14 O -0.477 6.477 15 N -0.130 5.130 16 C -0.437 4.437 17 H 0.131 0.869 18 C -0.176 4.176 19 N -0.506 5.506 20 Si 0.763 3.237 21 H -0.187 1.187 22 H -0.203 1.203 23 H -0.203 1.203 24 H 0.110 0.890 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.050 0.950 28 H 0.096 0.904 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.041 0.959 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.159 0.841 37 H 0.075 0.925 38 H 0.240 0.760 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.916 8.247 -9.808 14.114 hybrid contribution -0.388 -1.297 0.316 1.391 sum 5.528 6.950 -9.492 12.998 Atomic orbital electron populations 1.22242 0.93468 1.03703 1.01865 1.21124 0.94806 0.95813 0.83861 0.89858 1.21702 0.87254 0.99132 0.98415 1.58373 1.04177 1.63902 1.02852 1.22308 1.00587 0.98126 0.90303 1.21530 0.96075 0.96453 0.91456 1.21921 0.99036 1.00026 0.96056 1.23015 0.81248 1.05214 0.94435 1.47743 1.21306 1.35588 1.27567 1.20668 0.83033 0.79901 0.86815 1.90634 1.27758 1.60939 1.62605 1.19053 0.88750 0.86292 0.88362 1.90352 1.32514 1.64620 1.60218 1.41594 1.28949 1.23613 1.18842 1.19937 1.16812 1.10627 0.96288 0.86866 1.25592 0.95190 0.96546 1.00228 1.69489 1.19416 1.23065 1.38631 0.85676 0.78965 0.78747 0.80287 1.18677 1.20271 1.20303 0.89023 0.92491 0.93378 0.95045 0.90370 0.91758 0.91665 0.95936 0.93825 0.91474 0.90572 0.91164 0.84117 0.92529 0.76039 0.90949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.41 7.84 37.16 0.29 -2.12 16 2 C 0.15 2.28 2.67 -67.86 -0.18 2.10 16 3 H 0.08 1.19 8.11 -51.93 -0.42 0.77 16 4 C 0.07 0.92 4.64 -5.74 -0.03 0.90 16 5 N -0.57 -7.42 4.09 -247.81 -1.01 -8.43 16 6 C 0.03 0.36 9.45 60.07 0.57 0.93 16 7 C 0.07 0.98 5.32 -5.08 -0.03 0.95 16 8 C -0.13 -1.75 5.78 -27.18 -0.16 -1.90 16 9 C 0.08 1.37 5.37 -3.01 -0.02 1.36 16 10 N -0.59 -10.63 2.15 -165.57 -0.36 -10.98 16 11 C 0.51 11.08 7.10 -11.87 -0.08 11.00 16 12 O -0.54 -12.30 13.02 5.42 0.07 -12.23 16 13 C 0.39 9.63 7.60 -11.88 -0.09 9.54 16 14 O -0.59 -14.95 12.64 5.37 0.07 -14.88 16 15 N -0.50 -13.07 5.24 -11.59 -0.06 -13.14 16 16 C -0.31 -8.27 9.67 -15.15 -0.15 -8.42 16 17 H 0.11 3.12 7.15 -52.48 -0.38 2.74 16 18 C 0.03 0.81 5.51 -17.40 -0.10 0.71 16 19 N -0.87 -23.05 13.03 55.53 0.72 -22.33 16 20 Si 0.94 19.82 29.56 -169.99 -5.02 14.80 16 21 H -0.26 -5.51 7.11 56.52 0.40 -5.10 16 22 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 23 H -0.28 -5.76 7.11 56.52 0.40 -5.35 16 24 H 0.09 1.61 6.04 -51.93 -0.31 1.29 16 25 H 0.06 0.98 7.68 -51.93 -0.40 0.58 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.03 0.53 8.12 -51.93 -0.42 0.11 16 28 H 0.08 0.96 7.91 -51.93 -0.41 0.55 16 29 H 0.06 0.60 8.05 -51.93 -0.42 0.18 16 30 H 0.06 0.60 7.75 -51.93 -0.40 0.20 16 31 H 0.02 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.04 0.72 7.32 -51.93 -0.38 0.34 16 33 H 0.07 0.78 7.47 -51.93 -0.39 0.40 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.90 7.98 -51.93 -0.41 0.48 16 36 H 0.14 2.79 4.67 -54.03 -0.25 2.54 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.40 10.79 7.37 -40.82 -0.30 10.49 16 39 H 0.28 6.88 8.30 -40.82 -0.34 6.54 16 LS Contribution 308.50 15.07 4.65 4.65 Total: -1.00 -28.50 308.50 -6.63 -35.13 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -5.72 Total: 12.36 kcal Atomic # 6 Polarization: 15.02 SS G_CDS: 0.03 Total: 15.05 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: -0.71 Total: -54.88 kcal Atomic # 8 Polarization: -27.25 SS G_CDS: 0.14 Total: -27.11 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -28.50 -6.63 -35.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235279530.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.411 kcal (2) G-P(sol) polarization free energy of solvation -28.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds