Wall clock time and date at job start Mon Mar 30 2020 05:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.39643 * 2 1 4 4 C 1.54776 * 109.43480 * 240.11552 * 2 1 3 5 5 N 1.41443 * 109.98124 * 170.19866 * 4 2 1 6 6 C 1.46903 * 111.00154 * 191.68569 * 5 4 2 7 7 C 1.46193 * 116.34825 * 63.47896 * 5 4 2 8 8 C 1.51278 * 109.09541 * 272.96644 * 7 5 4 9 9 C 1.53805 * 109.62841 * 92.41651 * 8 7 5 10 10 N 1.44880 * 109.43660 * 119.89233 * 2 1 3 11 11 C 1.34783 * 118.74706 * 29.76712 * 10 2 1 12 12 O 1.21439 * 119.99428 * 7.60545 * 11 10 2 13 13 C 1.48833 * 120.00055 * 187.60336 * 11 10 2 14 14 O 1.21494 * 119.99756 * 6.47655 * 13 11 10 15 15 N 1.34769 * 119.99767 * 186.47785 * 13 11 10 16 16 C 1.36118 * 119.99867 * 180.02562 * 15 13 11 17 17 H 1.08003 * 120.00147 * 359.97438 * 16 15 13 18 18 C 1.39589 * 119.99945 * 179.97438 * 16 15 13 19 19 N 1.31010 * 120.00206 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99950 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47195 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47265 * 119.99923 * 20 18 16 23 23 H 1.48501 * 109.46875 * 240.00327 * 20 18 16 24 24 H 1.08999 * 109.46885 * 163.25369 * 1 2 3 25 25 H 1.08997 * 109.47377 * 283.25549 * 1 2 3 26 26 H 1.08999 * 109.47034 * 43.25682 * 1 2 3 27 27 H 1.08995 * 109.38600 * 290.35553 * 4 2 1 28 28 H 1.09004 * 109.38301 * 50.14442 * 4 2 1 29 29 H 1.09000 * 109.47299 * 59.99356 * 6 5 4 30 30 H 1.08997 * 109.47113 * 179.97438 * 6 5 4 31 31 H 1.09000 * 109.46506 * 299.99758 * 6 5 4 32 32 H 1.09004 * 109.53645 * 32.84935 * 7 5 4 33 33 H 1.08996 * 109.53690 * 153.00691 * 7 5 4 34 34 H 1.09000 * 109.44330 * 212.45973 * 8 7 5 35 35 H 1.08995 * 109.44896 * 332.39828 * 8 7 5 36 36 H 1.08992 * 109.11518 * 80.42297 * 9 8 7 37 37 H 1.08996 * 109.11288 * 199.49093 * 9 8 7 38 38 H 0.97002 * 120.00138 * 359.97438 * 15 13 11 39 39 H 0.97002 * 120.00018 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8920 1.0281 0.0000 4 6 2.0450 -0.7272 -1.2655 5 7 3.4411 -0.5410 -1.3955 6 6 3.9096 -0.9779 -2.7175 7 6 4.2725 -1.1035 -0.3327 8 6 4.3971 -0.0924 0.7856 9 6 3.2948 -0.3383 1.8297 10 7 2.0121 -0.6809 1.1845 11 6 1.2605 -1.6643 1.7180 12 8 0.2725 -2.0590 1.1324 13 6 1.6414 -2.2665 3.0247 14 8 2.5586 -1.7946 3.6666 15 7 0.9687 -3.3351 3.4958 16 6 1.3167 -3.8855 4.6911 17 1 2.1321 -3.4661 5.2618 18 6 0.6197 -4.9920 5.1793 19 7 -0.3698 -5.5004 4.4873 20 14 1.0968 -5.7469 6.8200 21 1 2.2373 -4.9925 7.3990 22 1 -0.0605 -5.6853 7.7485 23 1 1.4933 -7.1634 6.6164 24 1 -0.3633 -0.9841 -0.2961 25 1 -0.3634 0.2356 1.0002 26 1 -0.3633 0.7484 -0.7042 27 1 1.8281 -1.7923 -1.1842 28 1 1.5439 -0.3221 -2.1447 29 1 3.4061 -0.3985 -3.4913 30 1 4.9861 -0.8233 -2.7908 31 1 3.6842 -2.0359 -2.8513 32 1 3.8098 -2.0137 0.0488 33 1 5.2615 -1.3353 -0.7278 34 1 5.3739 -0.1932 1.2587 35 1 4.2930 0.9134 0.3788 36 1 3.5968 -1.1582 2.4812 37 1 3.1635 0.5626 2.4290 38 1 0.2361 -3.7115 2.9834 39 1 -0.8539 -6.2696 4.8264 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235279530.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:02 Heat of formation + Delta-G solvation = -56.822495 kcal Electronic energy + Delta-G solvation = -21930.951379 eV Core-core repulsion = 18680.931869 eV Total energy + Delta-G solvation = -3250.019510 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.00954 -39.92708 -38.83308 -36.82979 -35.81571 -34.44817 -33.46114 -31.33776 -28.14002 -27.90468 -27.31818 -25.22129 -24.08513 -22.41188 -21.64689 -20.64635 -19.67035 -18.30556 -17.43299 -17.10927 -17.03123 -16.64902 -16.48368 -16.17606 -15.70557 -15.24974 -15.05410 -14.93929 -14.21542 -13.93281 -13.73680 -13.62472 -13.45901 -13.22595 -12.97791 -12.93847 -12.64669 -12.54463 -12.44245 -12.21390 -12.10486 -11.98816 -11.70672 -11.65614 -11.10169 -10.27033 -9.70302 -9.62640 -9.22458 -8.65985 -6.10591 0.61838 1.40494 1.45056 1.56335 1.78831 2.26933 2.35689 2.92219 3.07504 3.15128 3.79600 3.88368 3.90775 4.09307 4.18493 4.21639 4.40034 4.57357 4.59468 4.60207 4.64874 4.74628 4.83115 4.87151 5.01311 5.04082 5.12389 5.15224 5.23233 5.28460 5.32550 5.70066 5.76658 6.10356 6.18614 6.33039 6.38472 6.81772 7.02341 7.30096 7.80894 8.49938 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.029077 B = 0.005069 C = 0.004800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.744047 B = 5522.437214 C = 5831.579263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.142 3.858 3 H 0.108 0.892 4 C 0.074 3.926 5 N -0.567 5.567 6 C 0.033 3.967 7 C 0.071 3.929 8 C -0.118 4.118 9 C 0.079 3.921 10 N -0.575 5.575 11 C 0.508 3.492 12 O -0.557 6.557 13 C 0.387 3.613 14 O -0.598 6.598 15 N -0.512 5.512 16 C -0.343 4.343 17 H 0.100 0.900 18 C -0.005 4.005 19 N -0.899 5.899 20 Si 1.009 2.991 21 H -0.262 1.262 22 H -0.267 1.267 23 H -0.267 1.267 24 H 0.067 0.933 25 H 0.034 0.966 26 H 0.085 0.915 27 H -0.002 1.002 28 H 0.105 0.895 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.013 0.987 32 H 0.006 0.994 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.109 0.891 37 H 0.062 0.938 38 H 0.398 0.602 39 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.147 9.190 -11.046 16.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.039 3.961 3 H 0.126 0.874 4 C -0.056 4.056 5 N -0.291 5.291 6 C -0.114 4.114 7 C -0.056 4.056 8 C -0.156 4.156 9 C -0.041 4.041 10 N -0.308 5.308 11 C 0.293 3.707 12 O -0.436 6.436 13 C 0.173 3.827 14 O -0.488 6.488 15 N -0.146 5.146 16 C -0.472 4.472 17 H 0.118 0.882 18 C -0.209 4.209 19 N -0.537 5.537 20 Si 0.830 3.170 21 H -0.186 1.186 22 H -0.192 1.192 23 H -0.192 1.192 24 H 0.086 0.914 25 H 0.053 0.947 26 H 0.104 0.896 27 H 0.016 0.984 28 H 0.123 0.877 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.032 0.968 32 H 0.025 0.975 33 H 0.110 0.890 34 H 0.115 0.885 35 H 0.105 0.895 36 H 0.127 0.873 37 H 0.080 0.920 38 H 0.233 0.767 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.147 9.611 -10.911 16.202 hybrid contribution -0.717 -1.605 0.542 1.840 sum 6.430 8.006 -10.369 14.593 Atomic orbital electron populations 1.22135 0.93559 1.03475 1.01464 1.21449 0.94846 0.96725 0.83053 0.87399 1.21614 0.88430 0.97020 0.98585 1.58471 1.03323 1.63450 1.03829 1.22418 1.01927 0.97858 0.89201 1.21567 0.97129 0.94983 0.91967 1.21854 0.98255 1.00668 0.94851 1.22953 0.81720 1.03860 0.95614 1.47847 1.21013 1.34020 1.27880 1.20211 0.83495 0.80991 0.85985 1.90643 1.28522 1.61787 1.62660 1.19733 0.87976 0.85655 0.89365 1.90361 1.32623 1.64723 1.61092 1.41685 1.29311 1.24539 1.19048 1.20014 1.17816 1.12262 0.97142 0.88188 1.26532 0.94601 0.96142 1.03666 1.69561 1.20157 1.23617 1.40317 0.84648 0.78781 0.77968 0.75570 1.18618 1.19215 1.19151 0.91424 0.94674 0.89596 0.98399 0.87667 0.89994 0.89878 0.96815 0.97512 0.88979 0.88525 0.89486 0.87347 0.91985 0.76729 0.90210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.46 7.84 71.98 0.56 -3.89 16 2 C 0.14 4.14 2.67 45.90 0.12 4.26 16 3 H 0.11 2.69 8.11 -2.39 -0.02 2.68 16 4 C 0.07 1.95 4.64 87.91 0.41 2.36 16 5 N -0.57 -13.21 4.09 -937.94 -3.84 -17.04 16 6 C 0.03 0.59 9.45 127.69 1.21 1.80 16 7 C 0.07 1.79 5.32 85.87 0.46 2.25 16 8 C -0.12 -2.83 5.78 30.30 0.18 -2.66 16 9 C 0.08 2.62 5.37 86.44 0.46 3.08 16 10 N -0.57 -20.73 2.15 -796.06 -1.71 -22.44 16 11 C 0.51 22.86 7.10 87.08 0.62 23.48 16 12 O -0.56 -26.27 13.02 -3.52 -0.05 -26.32 16 13 C 0.39 19.98 7.60 87.08 0.66 20.65 16 14 O -0.60 -31.64 12.64 -3.70 -0.05 -31.68 16 15 N -0.51 -28.34 5.24 -308.88 -1.62 -29.96 16 16 C -0.34 -19.27 9.67 84.35 0.82 -18.45 16 17 H 0.10 5.75 7.15 -2.91 -0.02 5.73 16 18 C -0.01 -0.29 5.51 85.14 0.47 0.18 16 19 N -0.90 -48.73 13.03 21.77 0.28 -48.45 16 20 Si 1.01 40.88 29.56 68.60 2.03 42.91 16 21 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 22 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 23 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 24 H 0.07 2.38 6.04 -2.39 -0.01 2.36 16 25 H 0.03 1.19 7.68 -2.39 -0.02 1.17 16 26 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.00 -0.07 8.12 -2.39 -0.02 -0.09 16 28 H 0.11 2.24 7.91 -2.38 -0.02 2.22 16 29 H 0.08 1.20 8.05 -2.39 -0.02 1.18 16 30 H 0.08 1.21 7.75 -2.39 -0.02 1.19 16 31 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 32 H 0.01 0.21 7.32 -2.38 -0.02 0.20 16 33 H 0.09 1.88 7.47 -2.39 -0.02 1.86 16 34 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.09 1.87 7.98 -2.39 -0.02 1.85 16 36 H 0.11 4.39 4.67 -35.64 -0.17 4.23 16 37 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.40 22.48 7.37 -92.71 -0.68 21.80 16 39 H 0.29 14.27 8.30 -92.71 -0.77 13.50 16 Total: -1.00 -64.24 308.50 1.23 -63.01 By element: Atomic # 1 Polarization: 36.70 SS G_CDS: 0.22 Total: 36.92 kcal Atomic # 6 Polarization: 27.09 SS G_CDS: 5.96 Total: 33.05 kcal Atomic # 7 Polarization: -111.01 SS G_CDS: -6.89 Total: -117.90 kcal Atomic # 8 Polarization: -57.91 SS G_CDS: -0.09 Total: -58.00 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.91 kcal Total: -64.24 1.23 -63.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235279530.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.189 kcal (2) G-P(sol) polarization free energy of solvation -64.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds