Wall clock time and date at job start Mon Mar 30 2020 04:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47129 * 2 1 4 4 C 1.50698 * 109.47138 * 239.99228 * 2 1 3 5 5 H 1.07992 * 119.99999 * 239.99660 * 4 2 1 6 6 C 1.37884 * 119.99748 * 60.00565 * 4 2 1 7 7 N 1.31514 * 119.99807 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 119.99742 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.46894 * 89.99883 * 8 6 4 10 10 H 1.48501 * 109.47090 * 209.99432 * 8 6 4 11 11 H 1.48496 * 109.47706 * 330.00131 * 8 6 4 12 12 N 1.46508 * 109.47003 * 119.99376 * 2 1 3 13 13 C 1.46502 * 119.99643 * 60.00316 * 12 2 1 14 14 C 1.34769 * 120.00089 * 240.27717 * 12 2 1 15 15 O 1.21280 * 120.00010 * 184.68902 * 14 12 2 16 16 C 1.50704 * 120.00207 * 4.68486 * 14 12 2 17 17 H 1.08998 * 110.01127 * 33.46321 * 16 14 12 18 18 C 1.54270 * 110.03311 * 272.02245 * 16 14 12 19 19 C 1.54884 * 104.19538 * 217.10133 * 18 16 14 20 20 C 1.54890 * 102.74626 * 37.94234 * 19 18 16 21 21 H 1.09000 * 110.48849 * 80.74012 * 20 19 18 22 22 C 1.50706 * 110.59942 * 203.31940 * 20 19 18 23 23 O 1.20824 * 119.99805 * 114.84287 * 22 20 19 24 24 O 1.34226 * 120.00333 * 294.84732 * 22 20 19 25 25 C 1.53868 * 110.03559 * 154.85404 * 16 14 12 26 26 H 1.09007 * 109.47190 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47294 * 300.00341 * 1 2 3 28 28 H 1.08995 * 109.47450 * 60.00490 * 1 2 3 29 29 H 0.96995 * 119.99704 * 180.02562 * 7 6 4 30 30 H 1.09000 * 109.47198 * 92.34875 * 13 12 2 31 31 H 1.09008 * 109.46719 * 212.35032 * 13 12 2 32 32 H 1.09001 * 109.47214 * 332.34733 * 13 12 2 33 33 H 1.08993 * 110.48457 * 335.78207 * 18 16 14 34 34 H 1.08999 * 110.48627 * 98.42372 * 18 16 14 35 35 H 1.08998 * 110.76041 * 279.62943 * 19 18 16 36 36 H 1.08998 * 110.75576 * 156.25385 * 19 18 16 37 37 H 0.96696 * 117.00293 * 180.02562 * 24 22 20 38 38 H 1.08996 * 110.03466 * 238.57533 * 25 16 14 39 39 H 1.09007 * 110.03035 * 359.95098 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7106 -1.2303 5 1 2.6532 -1.5886 -1.1311 6 6 1.6993 -0.2395 -2.4827 7 7 0.9429 0.8295 -2.6034 8 14 2.3225 -1.1199 -4.0078 9 1 1.3447 -2.1619 -4.4121 10 1 2.4873 -0.1407 -5.1120 11 1 3.6308 -1.7570 -3.7118 12 7 2.0183 -0.6905 1.1963 13 6 1.6644 -2.0931 1.4282 14 6 2.7885 -0.0339 2.0862 15 8 3.2628 -0.6270 3.0317 16 6 3.0604 1.4375 1.9064 17 1 2.1946 1.9248 1.4581 18 6 4.3029 1.6402 1.0146 19 6 5.0161 2.8693 1.6306 20 6 4.8121 2.6563 3.1512 21 1 5.5408 1.9439 3.5378 22 6 4.9151 3.9665 3.8886 23 8 3.9492 4.4169 4.4578 24 8 6.0798 4.6332 3.9131 25 6 3.3842 2.0836 3.2648 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5137 -0.8900 29 1 0.7083 1.1606 -3.4844 30 1 2.4371 -2.7370 1.0082 31 1 1.5828 -2.2748 2.4999 32 1 0.7099 -2.3110 0.9491 33 1 4.9492 0.7636 1.0561 34 1 4.0050 1.8474 -0.0132 35 1 4.5426 3.7949 1.3033 36 1 6.0766 2.8667 1.3791 37 1 6.0972 5.4689 4.3992 38 1 2.6761 2.8850 3.4754 39 1 3.3439 1.3331 4.0543 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235410216.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:04 Heat of formation + Delta-G solvation = -141.036278 kcal Electronic energy + Delta-G solvation = -21527.789823 eV Core-core repulsion = 18241.825779 eV Total energy + Delta-G solvation = -3285.964045 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.58174 -39.42495 -36.87674 -36.03776 -35.51605 -32.66332 -30.08623 -29.17176 -28.64799 -26.28140 -25.32146 -23.28508 -21.69538 -20.69337 -19.96985 -18.17148 -17.93042 -17.14413 -16.54238 -16.35609 -15.73871 -15.11613 -14.65942 -14.46288 -13.96367 -13.86587 -13.28126 -12.99980 -12.74029 -12.32522 -11.99138 -11.65809 -11.57423 -11.51813 -11.23611 -11.16434 -11.13110 -10.99037 -10.90991 -10.73686 -10.61510 -10.47344 -10.36067 -10.25681 -10.10541 -9.34873 -8.93850 -8.55515 -7.63928 -6.20050 -4.28180 2.19115 3.00615 3.20010 3.27796 3.29932 3.37633 3.95854 4.30666 4.56203 4.69870 5.00469 5.11064 5.33882 5.43954 5.59631 5.62476 5.64622 5.74346 5.87511 5.99737 6.14618 6.24185 6.28163 6.32459 6.41699 6.44557 6.51923 6.56729 6.63127 6.73090 6.90623 7.17915 7.39539 7.64923 7.84830 7.86410 8.09683 8.44408 8.74486 9.00719 9.40166 10.84563 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022363 B = 0.005340 C = 0.004819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.791559 B = 5241.711306 C = 5809.064854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.251 3.749 3 H 0.058 0.942 4 C -0.526 4.526 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.888 5.888 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.590 5.590 13 C 0.098 3.902 14 C 0.515 3.485 15 O -0.576 6.576 16 C -0.110 4.110 17 H 0.101 0.899 18 C -0.105 4.105 19 C -0.107 4.107 20 C -0.085 4.085 21 H 0.114 0.886 22 C 0.487 3.513 23 O -0.516 6.516 24 O -0.517 6.517 25 C -0.103 4.103 26 H 0.033 0.967 27 H 0.013 0.987 28 H 0.095 0.905 29 H 0.264 0.736 30 H 0.045 0.955 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.406 0.594 38 H 0.083 0.917 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.027 4.931 7.035 10.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.150 3.850 3 H 0.075 0.925 4 C -0.565 4.565 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.527 5.527 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.320 5.320 13 C -0.046 4.046 14 C 0.303 3.697 15 O -0.457 6.457 16 C -0.131 4.131 17 H 0.119 0.881 18 C -0.143 4.143 19 C -0.145 4.145 20 C -0.104 4.104 21 H 0.132 0.868 22 C 0.330 3.670 23 O -0.404 6.404 24 O -0.328 6.328 25 C -0.141 4.141 26 H 0.052 0.948 27 H 0.032 0.968 28 H 0.113 0.887 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.108 0.892 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.264 0.736 38 H 0.102 0.898 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.875 4.473 7.282 10.371 hybrid contribution 0.180 0.069 -0.695 0.721 sum 6.055 4.542 6.587 10.034 Atomic orbital electron populations 1.22151 0.98188 0.99923 1.00921 1.19128 0.91411 0.93590 0.80835 0.92466 1.21319 1.31892 1.13216 0.90023 0.92074 1.24873 0.94797 0.94928 0.98965 1.69853 1.36217 1.22626 1.23970 0.86505 0.79334 0.79397 0.82283 1.20586 1.21092 1.19858 1.48249 1.48675 1.11763 1.23282 1.21347 1.00398 0.82724 1.00082 1.20372 0.78350 0.89160 0.81834 1.90566 1.52561 1.69544 1.33075 1.21881 1.00897 0.93646 0.96687 0.88111 1.22258 0.94874 0.97455 0.99672 1.22490 1.01597 0.99441 0.90972 1.21929 1.01248 0.90686 0.96585 0.86816 1.23577 0.79591 0.86412 0.77439 1.90697 1.38420 1.68334 1.42959 1.84570 1.37783 1.38928 1.71524 1.22136 0.93546 1.00732 0.97658 0.94791 0.96810 0.88673 0.92570 0.93685 0.92647 0.91238 0.90834 0.89168 0.90793 0.90156 0.73627 0.89798 0.89251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.39 8.95 37.16 0.33 -3.05 16 2 C 0.25 5.68 2.45 -69.08 -0.17 5.51 16 3 H 0.06 1.33 4.99 -51.93 -0.26 1.07 16 4 C -0.53 -13.07 8.37 -34.44 -0.29 -13.36 16 5 H 0.06 1.56 7.65 -52.49 -0.40 1.16 16 6 C 0.07 1.68 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -22.91 11.32 55.43 0.63 -22.28 16 8 Si 0.90 19.87 29.54 -169.99 -5.02 14.85 16 9 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 10 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 12 N -0.59 -12.41 2.75 -175.25 -0.48 -12.89 16 13 C 0.10 1.88 9.60 59.85 0.57 2.45 16 14 C 0.52 10.47 6.64 -10.99 -0.07 10.40 16 15 O -0.58 -12.72 15.23 5.56 0.08 -12.64 16 16 C -0.11 -1.89 2.35 -90.65 -0.21 -2.11 16 17 H 0.10 1.78 6.50 -51.93 -0.34 1.44 16 18 C -0.10 -1.64 6.15 -25.07 -0.15 -1.79 16 19 C -0.11 -1.36 6.32 -24.74 -0.16 -1.51 16 20 C -0.09 -1.13 3.36 -90.11 -0.30 -1.43 16 21 H 0.11 1.41 8.14 -51.93 -0.42 0.98 16 22 C 0.49 6.28 7.63 36.01 0.27 6.55 16 23 O -0.52 -8.12 16.18 -18.75 -0.30 -8.42 16 24 O -0.52 -5.07 13.42 -39.25 -0.53 -5.60 16 25 C -0.10 -1.60 5.71 -25.62 -0.15 -1.75 16 26 H 0.03 0.72 6.66 -51.93 -0.35 0.38 16 27 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 28 H 0.09 2.29 6.07 -51.93 -0.32 1.98 16 29 H 0.26 6.56 8.31 -40.82 -0.34 6.22 16 30 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.05 1.01 7.56 -51.92 -0.39 0.62 16 32 H 0.07 1.28 6.43 -51.93 -0.33 0.94 16 33 H 0.07 1.20 7.85 -51.93 -0.41 0.80 16 34 H 0.09 1.51 7.81 -51.93 -0.41 1.10 16 35 H 0.07 0.91 8.05 -51.93 -0.42 0.49 16 36 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.41 2.20 9.10 45.56 0.41 2.61 16 38 H 0.08 1.32 6.85 -51.93 -0.36 0.96 16 39 H 0.09 1.51 6.71 -51.93 -0.35 1.16 16 LS Contribution 315.72 15.07 4.76 4.76 Total: -1.00 -29.46 315.72 -6.01 -35.47 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -4.73 Total: 5.26 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: -0.42 Total: 1.50 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: 0.14 Total: -35.17 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -0.75 Total: -26.66 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.46 -6.01 -35.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235410216.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.568 kcal (2) G-P(sol) polarization free energy of solvation -29.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds