Wall clock time and date at job start Mon Mar 30 2020 04:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47129 * 2 1 4 4 C 1.50698 * 109.47138 * 239.99228 * 2 1 3 5 5 H 1.07992 * 119.99999 * 239.99660 * 4 2 1 6 6 C 1.37884 * 119.99748 * 60.00565 * 4 2 1 7 7 N 1.31514 * 119.99807 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 119.99742 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.46894 * 89.99883 * 8 6 4 10 10 H 1.48501 * 109.47090 * 209.99432 * 8 6 4 11 11 H 1.48496 * 109.47706 * 330.00131 * 8 6 4 12 12 N 1.46508 * 109.47003 * 119.99376 * 2 1 3 13 13 C 1.46502 * 119.99643 * 60.00316 * 12 2 1 14 14 C 1.34769 * 120.00089 * 240.27717 * 12 2 1 15 15 O 1.21280 * 120.00010 * 184.68902 * 14 12 2 16 16 C 1.50704 * 120.00207 * 4.68486 * 14 12 2 17 17 H 1.08998 * 110.01127 * 33.46321 * 16 14 12 18 18 C 1.54270 * 110.03311 * 272.02245 * 16 14 12 19 19 C 1.54884 * 104.19538 * 217.10133 * 18 16 14 20 20 C 1.54890 * 102.74626 * 37.94234 * 19 18 16 21 21 H 1.09000 * 110.48849 * 80.74012 * 20 19 18 22 22 C 1.50706 * 110.59942 * 203.31940 * 20 19 18 23 23 O 1.20824 * 119.99805 * 114.84287 * 22 20 19 24 24 O 1.34226 * 120.00333 * 294.84732 * 22 20 19 25 25 C 1.53868 * 110.03559 * 154.85404 * 16 14 12 26 26 H 1.09007 * 109.47190 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47294 * 300.00341 * 1 2 3 28 28 H 1.08995 * 109.47450 * 60.00490 * 1 2 3 29 29 H 0.96995 * 119.99704 * 180.02562 * 7 6 4 30 30 H 1.09000 * 109.47198 * 92.34875 * 13 12 2 31 31 H 1.09008 * 109.46719 * 212.35032 * 13 12 2 32 32 H 1.09001 * 109.47214 * 332.34733 * 13 12 2 33 33 H 1.08993 * 110.48457 * 335.78207 * 18 16 14 34 34 H 1.08999 * 110.48627 * 98.42372 * 18 16 14 35 35 H 1.08998 * 110.76041 * 279.62943 * 19 18 16 36 36 H 1.08998 * 110.75576 * 156.25385 * 19 18 16 37 37 H 0.96696 * 117.00293 * 180.02562 * 24 22 20 38 38 H 1.08996 * 110.03466 * 238.57533 * 25 16 14 39 39 H 1.09007 * 110.03035 * 359.95098 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7106 -1.2303 5 1 2.6532 -1.5886 -1.1311 6 6 1.6993 -0.2395 -2.4827 7 7 0.9429 0.8295 -2.6034 8 14 2.3225 -1.1199 -4.0078 9 1 1.3447 -2.1619 -4.4121 10 1 2.4873 -0.1407 -5.1120 11 1 3.6308 -1.7570 -3.7118 12 7 2.0183 -0.6905 1.1963 13 6 1.6644 -2.0931 1.4282 14 6 2.7885 -0.0339 2.0862 15 8 3.2628 -0.6270 3.0317 16 6 3.0604 1.4375 1.9064 17 1 2.1946 1.9248 1.4581 18 6 4.3029 1.6402 1.0146 19 6 5.0161 2.8693 1.6306 20 6 4.8121 2.6563 3.1512 21 1 5.5408 1.9439 3.5378 22 6 4.9151 3.9665 3.8886 23 8 3.9492 4.4169 4.4578 24 8 6.0798 4.6332 3.9131 25 6 3.3842 2.0836 3.2648 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5137 -0.8900 29 1 0.7083 1.1606 -3.4844 30 1 2.4371 -2.7370 1.0082 31 1 1.5828 -2.2748 2.4999 32 1 0.7099 -2.3110 0.9491 33 1 4.9492 0.7636 1.0561 34 1 4.0050 1.8474 -0.0132 35 1 4.5426 3.7949 1.3033 36 1 6.0766 2.8667 1.3791 37 1 6.0972 5.4689 4.3992 38 1 2.6761 2.8850 3.4754 39 1 3.3439 1.3331 4.0543 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235410216.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:04 Heat of formation + Delta-G solvation = -158.850930 kcal Electronic energy + Delta-G solvation = -21528.562325 eV Core-core repulsion = 18241.825779 eV Total energy + Delta-G solvation = -3286.736546 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.72512 -40.84883 -38.13284 -37.26007 -37.01143 -34.52902 -31.37868 -30.95734 -29.85930 -27.78808 -27.23384 -24.43172 -23.35468 -22.03779 -21.12414 -19.50516 -19.17826 -18.50227 -18.27547 -17.65389 -17.00012 -16.69547 -16.26499 -16.02161 -15.36973 -15.08143 -14.60413 -14.54675 -14.23275 -13.88282 -13.46707 -13.24324 -13.00183 -12.85722 -12.73595 -12.63482 -12.56053 -12.49110 -12.29579 -12.25231 -12.18208 -12.03253 -11.75960 -11.62677 -11.41854 -11.15912 -10.62037 -10.44362 -9.36199 -8.11833 -6.25557 1.19462 1.44191 1.47903 1.55393 1.73608 2.11639 2.34293 2.50403 3.16943 3.37588 3.53313 3.71120 4.12576 4.29014 4.37562 4.40049 4.44671 4.55314 4.57066 4.66058 4.71324 4.75453 4.94920 4.95711 4.98297 5.06084 5.09040 5.17371 5.23825 5.27658 5.41595 5.59835 5.62954 5.77635 5.99614 6.23046 6.68435 6.86817 7.02226 7.32545 7.47876 8.91331 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022363 B = 0.005340 C = 0.004819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.791559 B = 5241.711306 C = 5809.064854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.256 3.744 3 H 0.051 0.949 4 C -0.536 4.536 5 H 0.050 0.950 6 C 0.031 3.969 7 N -0.908 5.908 8 Si 0.951 3.049 9 H -0.278 1.278 10 H -0.282 1.282 11 H -0.275 1.275 12 N -0.598 5.598 13 C 0.097 3.903 14 C 0.510 3.490 15 O -0.595 6.595 16 C -0.109 4.109 17 H 0.094 0.906 18 C -0.102 4.102 19 C -0.095 4.095 20 C -0.083 4.083 21 H 0.126 0.874 22 C 0.498 3.502 23 O -0.549 6.549 24 O -0.505 6.505 25 C -0.097 4.097 26 H 0.035 0.965 27 H 0.026 0.974 28 H 0.075 0.925 29 H 0.266 0.734 30 H 0.043 0.957 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.105 0.895 37 H 0.427 0.573 38 H 0.081 0.919 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.183 5.495 6.984 11.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.155 3.845 3 H 0.068 0.932 4 C -0.575 4.575 5 H 0.068 0.932 6 C -0.170 4.170 7 N -0.546 5.546 8 Si 0.777 3.223 9 H -0.204 1.204 10 H -0.208 1.208 11 H -0.200 1.200 12 N -0.327 5.327 13 C -0.046 4.046 14 C 0.300 3.700 15 O -0.478 6.478 16 C -0.130 4.130 17 H 0.112 0.888 18 C -0.140 4.140 19 C -0.132 4.132 20 C -0.102 4.102 21 H 0.144 0.856 22 C 0.342 3.658 23 O -0.440 6.440 24 O -0.319 6.319 25 C -0.135 4.135 26 H 0.054 0.946 27 H 0.045 0.955 28 H 0.094 0.906 29 H 0.075 0.925 30 H 0.061 0.939 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.124 0.876 37 H 0.289 0.711 38 H 0.099 0.901 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.051 5.049 7.238 11.296 hybrid contribution -0.158 -0.111 -0.644 0.672 sum 6.893 4.938 6.594 10.742 Atomic orbital electron populations 1.22005 0.97772 0.99925 1.00559 1.18947 0.91613 0.93158 0.80778 0.93156 1.21462 1.31863 1.13012 0.91127 0.93156 1.25448 0.94978 0.95493 1.01099 1.69939 1.36805 1.23418 1.24473 0.85666 0.78657 0.78420 0.79522 1.20420 1.20784 1.19963 1.48302 1.48903 1.12441 1.23031 1.21411 1.00622 0.81939 1.00631 1.20881 0.77617 0.90325 0.81214 1.90547 1.53199 1.70336 1.33704 1.21903 1.01446 0.91516 0.98111 0.88816 1.22201 0.94254 0.98712 0.98798 1.22442 1.02763 0.97974 0.90022 1.21851 0.99750 0.91421 0.97201 0.85639 1.23309 0.79756 0.86103 0.76632 1.90699 1.39712 1.69114 1.44456 1.84505 1.35837 1.40047 1.71471 1.22009 0.95421 1.00094 0.95939 0.94561 0.95466 0.90612 0.92501 0.93875 0.91892 0.90605 0.91655 0.90522 0.90126 0.87629 0.71079 0.90082 0.90747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.33 8.95 71.98 0.64 -5.68 16 2 C 0.26 11.60 2.45 44.24 0.11 11.71 16 3 H 0.05 2.36 4.99 -2.39 -0.01 2.35 16 4 C -0.54 -26.59 8.37 25.60 0.21 -26.37 16 5 H 0.05 2.56 7.65 -2.91 -0.02 2.54 16 6 C 0.03 1.52 5.30 84.66 0.45 1.97 16 7 N -0.91 -46.60 11.32 21.45 0.24 -46.36 16 8 Si 0.95 40.32 29.54 68.60 2.03 42.34 16 9 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 10 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 11 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 12 N -0.60 -25.09 2.75 -826.77 -2.28 -27.37 16 13 C 0.10 3.69 9.60 127.77 1.23 4.92 16 14 C 0.51 20.75 6.64 87.66 0.58 21.33 16 15 O -0.59 -26.21 15.23 -3.03 -0.05 -26.26 16 16 C -0.11 -3.72 2.35 -10.82 -0.03 -3.75 16 17 H 0.09 3.34 6.50 -2.39 -0.02 3.32 16 18 C -0.10 -3.11 6.15 31.67 0.19 -2.91 16 19 C -0.09 -2.18 6.32 31.88 0.20 -1.97 16 20 C -0.08 -2.04 3.36 -10.47 -0.04 -2.07 16 21 H 0.13 2.81 8.14 -2.39 -0.02 2.79 16 22 C 0.50 11.72 7.63 71.24 0.54 12.27 16 23 O -0.55 -16.50 16.18 21.97 0.36 -16.14 16 24 O -0.51 -8.29 13.42 -51.38 -0.69 -8.98 16 25 C -0.10 -2.95 5.71 31.31 0.18 -2.78 16 26 H 0.04 1.53 6.66 -2.38 -0.02 1.51 16 27 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.08 3.65 6.07 -2.39 -0.01 3.64 16 29 H 0.27 13.08 8.31 -92.71 -0.77 12.31 16 30 H 0.04 1.63 8.14 -2.39 -0.02 1.62 16 31 H 0.06 2.28 7.56 -2.38 -0.02 2.26 16 32 H 0.08 2.75 6.43 -2.39 -0.02 2.73 16 33 H 0.06 2.09 7.85 -2.39 -0.02 2.08 16 34 H 0.08 2.55 7.81 -2.39 -0.02 2.53 16 35 H 0.08 1.78 8.05 -2.39 -0.02 1.76 16 36 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.43 3.22 9.10 -74.06 -0.67 2.54 16 38 H 0.08 2.52 6.85 -2.39 -0.02 2.50 16 39 H 0.07 2.50 6.71 -2.38 -0.02 2.49 16 Total: -1.00 -61.39 315.72 4.29 -57.10 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: 0.40 Total: 19.00 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: 4.28 Total: 6.66 kcal Atomic # 7 Polarization: -71.69 SS G_CDS: -2.03 Total: -73.72 kcal Atomic # 8 Polarization: -51.00 SS G_CDS: -0.38 Total: -51.38 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 2.03 Total: 42.34 kcal Total: -61.39 4.29 -57.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235410216.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.755 kcal (2) G-P(sol) polarization free energy of solvation -61.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds