Wall clock time and date at job start Mon Mar 30 2020 05:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00179 * 2 1 4 4 H 1.48500 * 109.47143 * 269.99601 * 3 2 1 5 5 H 1.48496 * 109.47402 * 29.99551 * 3 2 1 6 6 H 1.48506 * 109.47185 * 149.99954 * 3 2 1 7 7 C 1.37884 * 119.99671 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99362 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00033 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.46970 * 180.02562 * 9 7 2 11 11 C 1.34775 * 119.99886 * 179.97438 * 10 9 7 12 12 O 1.21585 * 120.00176 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00011 * 179.97438 * 11 10 9 14 14 C 1.46504 * 120.00172 * 179.97438 * 13 11 10 15 15 C 1.52994 * 109.46971 * 180.02562 * 14 13 11 16 16 C 1.53001 * 109.46964 * 180.02562 * 15 14 13 17 17 N 1.46498 * 109.47601 * 180.02562 * 16 15 14 18 18 C 1.46768 * 124.34879 * 89.99607 * 17 16 15 19 19 C 1.54480 * 105.55098 * 197.08340 * 18 17 16 20 20 C 1.54631 * 101.76472 * 334.54015 * 19 18 17 21 21 C 1.34621 * 124.47196 * 270.02849 * 17 16 15 22 22 O 1.21286 * 124.90539 * 359.55259 * 21 17 16 23 23 H 0.96996 * 119.99282 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.47462 * 59.99741 * 9 7 2 25 25 H 1.08999 * 109.46994 * 299.99698 * 9 7 2 26 26 H 0.97000 * 119.99850 * 359.97438 * 10 9 7 27 27 H 0.97000 * 119.99725 * 0.02562 * 13 11 10 28 28 H 1.09001 * 109.46700 * 60.00567 * 14 13 11 29 29 H 1.08992 * 109.47268 * 300.00730 * 14 13 11 30 30 H 1.08994 * 109.47345 * 60.00612 * 15 14 13 31 31 H 1.08998 * 109.47760 * 300.00018 * 15 14 13 32 32 H 1.09002 * 109.47341 * 60.00167 * 16 15 14 33 33 H 1.08998 * 109.47560 * 300.00047 * 16 15 14 34 34 H 1.09002 * 110.24468 * 78.03845 * 18 17 16 35 35 H 1.09002 * 110.24463 * 316.12602 * 18 17 16 36 36 H 1.08995 * 110.97082 * 92.66028 * 19 18 17 37 37 H 1.09001 * 110.96924 * 216.42557 * 19 18 17 38 38 H 1.09000 * 110.48694 * 143.47575 * 20 19 18 39 39 H 1.08994 * 110.49106 * 266.12244 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0018 11 6 1.7537 -4.8834 0.0025 12 8 0.5583 -5.1055 0.0026 13 7 2.6294 -5.9078 0.0031 14 6 2.1411 -7.2891 0.0045 15 6 3.3310 -8.2507 0.0056 16 6 2.8210 -9.6932 0.0064 17 7 3.9603 -10.6141 0.0081 18 6 4.6035 -11.1336 1.2208 19 6 5.9738 -11.6792 0.7615 20 6 5.7010 -12.0058 -0.7251 21 6 4.5542 -11.0936 -1.1009 22 8 4.2183 -10.8316 -2.2365 23 1 -0.4849 0.8401 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6240 -2.5567 0.8903 26 1 3.1566 -3.4355 0.0021 27 1 3.5831 -5.7306 0.0034 28 1 1.5353 -7.4611 -0.8852 29 1 1.5357 -7.4595 0.8947 30 1 3.9364 -8.0786 0.8955 31 1 3.9367 -8.0804 -0.8844 32 1 2.2158 -9.8651 -0.8837 33 1 2.2151 -9.8639 0.8962 34 1 4.0036 -11.9351 1.6520 35 1 4.7406 -10.3329 1.9475 36 1 6.7487 -10.9187 0.8580 37 1 6.2411 -12.5789 1.3158 38 1 6.5791 -11.7844 -1.3317 39 1 5.4108 -13.0502 -0.8392 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000244303189.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:06 Heat of formation + Delta-G solvation = -76.644307 kcal Electronic energy + Delta-G solvation = -19674.815001 eV Core-core repulsion = 16423.935953 eV Total energy + Delta-G solvation = -3250.879048 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.66454 -39.15182 -36.79581 -35.73701 -34.07790 -33.39718 -32.25337 -30.43936 -27.95006 -27.24866 -25.41156 -22.70261 -22.28923 -21.80421 -20.20597 -19.60193 -17.99949 -17.15764 -16.89905 -16.03946 -15.93847 -15.53705 -15.27294 -14.59665 -14.28202 -14.18204 -14.07255 -13.72737 -13.51125 -13.12031 -12.97168 -12.57335 -12.40830 -11.95141 -11.93467 -11.72609 -11.65928 -11.47622 -11.05123 -10.93175 -10.84766 -10.27860 -10.08047 -9.41973 -9.34338 -9.05850 -8.75323 -8.64488 -7.72177 -6.12856 -4.19244 2.27038 2.62167 3.26537 3.31593 3.34211 3.45767 3.94682 3.99501 4.02879 4.34722 4.35425 4.57947 4.70261 4.81827 4.87808 5.03219 5.08772 5.22929 5.23365 5.24071 5.24995 5.32323 5.41647 5.50171 5.65676 5.96524 6.02304 6.21192 6.78013 6.89115 7.15468 7.55151 7.58491 7.60657 7.86153 7.94132 8.07604 8.79599 8.98018 9.36759 9.51366 10.97471 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.041198 B = 0.002557 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.473981 B =10947.067415 C =11163.837825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.541 4.541 8 H 0.062 0.938 9 C 0.267 3.733 10 N -0.730 5.730 11 C 0.692 3.308 12 O -0.601 6.601 13 N -0.758 5.758 14 C 0.145 3.855 15 C -0.147 4.147 16 C 0.129 3.871 17 N -0.621 5.621 18 C 0.100 3.900 19 C -0.132 4.132 20 C -0.156 4.156 21 C 0.513 3.487 22 O -0.529 6.529 23 H 0.265 0.735 24 H 0.025 0.975 25 H 0.025 0.975 26 H 0.386 0.614 27 H 0.391 0.609 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.101 0.899 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.694 -24.539 4.208 28.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.732 3.268 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.580 4.580 8 H 0.080 0.920 9 C 0.145 3.855 10 N -0.382 5.382 11 C 0.392 3.608 12 O -0.481 6.481 13 N -0.416 5.416 14 C 0.019 3.981 15 C -0.186 4.186 16 C 0.007 3.993 17 N -0.355 5.355 18 C -0.023 4.023 19 C -0.170 4.170 20 C -0.196 4.196 21 C 0.301 3.699 22 O -0.405 6.405 23 H 0.075 0.925 24 H 0.043 0.957 25 H 0.043 0.957 26 H 0.218 0.782 27 H 0.224 0.776 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.109 0.891 38 H 0.120 0.880 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 12.119 -24.390 3.610 27.473 hybrid contribution 1.326 1.127 0.107 1.743 sum 13.444 -23.263 3.717 27.124 Atomic orbital electron populations 1.69984 1.06085 1.27233 1.49001 1.24955 0.94925 0.99405 0.94811 0.86406 0.79569 0.82660 0.78190 1.20485 1.21022 1.19805 1.21232 0.93253 0.90460 1.53028 0.91973 1.18976 0.87803 0.81080 0.97606 1.45714 1.10756 1.04446 1.77291 1.16150 0.85198 0.81072 0.78389 1.90869 1.14258 1.84271 1.58663 1.45117 1.08790 1.05122 1.82542 1.20902 0.95174 0.79746 1.02258 1.22157 0.98828 0.94344 1.03229 1.21289 0.86911 0.87204 1.03914 1.48366 1.33310 1.46579 1.07261 1.22109 0.93445 0.99185 0.87601 1.22603 0.96844 1.02457 0.95126 1.22338 0.98649 1.00842 0.97766 1.21031 0.83888 0.80531 0.84439 1.90758 1.67423 1.61285 1.21034 0.92479 0.95747 0.95748 0.78197 0.77630 0.91772 0.91854 0.91109 0.90901 0.89452 0.89758 0.90938 0.90143 0.89872 0.89106 0.88027 0.87843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.51 13.29 55.43 0.74 -25.78 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.54 -14.99 9.28 -34.44 -0.32 -15.31 16 8 H 0.06 1.61 7.60 -52.48 -0.40 1.21 16 9 C 0.27 7.31 5.43 -5.20 -0.03 7.28 16 10 N -0.73 -16.11 5.55 -66.42 -0.37 -16.48 16 11 C 0.69 14.80 8.57 -86.92 -0.74 14.05 16 12 O -0.60 -15.52 16.34 5.29 0.09 -15.43 16 13 N -0.76 -11.66 5.56 -65.23 -0.36 -12.02 16 14 C 0.14 1.88 5.67 -4.04 -0.02 1.85 16 15 C -0.15 -1.39 5.65 -26.73 -0.15 -1.54 16 16 C 0.13 1.11 5.94 -4.04 -0.02 1.08 16 17 N -0.62 -5.00 2.94 -172.35 -0.51 -5.51 16 18 C 0.10 0.45 7.34 -3.12 -0.02 0.43 16 19 C -0.13 -0.44 7.18 -25.10 -0.18 -0.62 16 20 C -0.16 -0.87 6.86 -26.74 -0.18 -1.06 16 21 C 0.51 5.18 8.03 -10.77 -0.09 5.10 16 22 O -0.53 -7.87 17.60 5.55 0.10 -7.77 16 23 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 24 H 0.02 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.02 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.39 7.26 8.34 -40.82 -0.34 6.92 16 27 H 0.39 4.83 8.49 -40.82 -0.35 4.48 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.09 0.88 7.93 -51.93 -0.41 0.46 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 38 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 334.06 15.07 5.03 5.03 Total: -1.00 -36.87 334.06 -8.29 -45.17 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -6.13 Total: 3.75 kcal Atomic # 6 Polarization: 14.79 SS G_CDS: -1.86 Total: 12.93 kcal Atomic # 7 Polarization: -59.29 SS G_CDS: -0.50 Total: -59.79 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: 0.18 Total: -23.20 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -36.87 -8.29 -45.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000244303189.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.479 kcal (2) G-P(sol) polarization free energy of solvation -36.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds