Wall clock time and date at job start Mon Mar 30 2020 05:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00179 * 2 1 4 4 H 1.48500 * 109.47143 * 269.99601 * 3 2 1 5 5 H 1.48496 * 109.47402 * 29.99551 * 3 2 1 6 6 H 1.48506 * 109.47185 * 149.99954 * 3 2 1 7 7 C 1.37884 * 119.99671 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99362 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00033 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.46970 * 180.02562 * 9 7 2 11 11 C 1.34775 * 119.99886 * 179.97438 * 10 9 7 12 12 O 1.21585 * 120.00176 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00011 * 179.97438 * 11 10 9 14 14 C 1.46504 * 120.00172 * 179.97438 * 13 11 10 15 15 C 1.52994 * 109.46971 * 180.02562 * 14 13 11 16 16 C 1.53001 * 109.46964 * 180.02562 * 15 14 13 17 17 N 1.46498 * 109.47601 * 180.02562 * 16 15 14 18 18 C 1.46768 * 124.34879 * 89.99607 * 17 16 15 19 19 C 1.54480 * 105.55098 * 197.08340 * 18 17 16 20 20 C 1.54631 * 101.76472 * 334.54015 * 19 18 17 21 21 C 1.34621 * 124.47196 * 270.02849 * 17 16 15 22 22 O 1.21286 * 124.90539 * 359.55259 * 21 17 16 23 23 H 0.96996 * 119.99282 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.47462 * 59.99741 * 9 7 2 25 25 H 1.08999 * 109.46994 * 299.99698 * 9 7 2 26 26 H 0.97000 * 119.99850 * 359.97438 * 10 9 7 27 27 H 0.97000 * 119.99725 * 0.02562 * 13 11 10 28 28 H 1.09001 * 109.46700 * 60.00567 * 14 13 11 29 29 H 1.08992 * 109.47268 * 300.00730 * 14 13 11 30 30 H 1.08994 * 109.47345 * 60.00612 * 15 14 13 31 31 H 1.08998 * 109.47760 * 300.00018 * 15 14 13 32 32 H 1.09002 * 109.47341 * 60.00167 * 16 15 14 33 33 H 1.08998 * 109.47560 * 300.00047 * 16 15 14 34 34 H 1.09002 * 110.24468 * 78.03845 * 18 17 16 35 35 H 1.09002 * 110.24463 * 316.12602 * 18 17 16 36 36 H 1.08995 * 110.97082 * 92.66028 * 19 18 17 37 37 H 1.09001 * 110.96924 * 216.42557 * 19 18 17 38 38 H 1.09000 * 110.48694 * 143.47575 * 20 19 18 39 39 H 1.08994 * 110.49106 * 266.12244 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0018 11 6 1.7537 -4.8834 0.0025 12 8 0.5583 -5.1055 0.0026 13 7 2.6294 -5.9078 0.0031 14 6 2.1411 -7.2891 0.0045 15 6 3.3310 -8.2507 0.0056 16 6 2.8210 -9.6932 0.0064 17 7 3.9603 -10.6141 0.0081 18 6 4.6035 -11.1336 1.2208 19 6 5.9738 -11.6792 0.7615 20 6 5.7010 -12.0058 -0.7251 21 6 4.5542 -11.0936 -1.1009 22 8 4.2183 -10.8316 -2.2365 23 1 -0.4849 0.8401 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6240 -2.5567 0.8903 26 1 3.1566 -3.4355 0.0021 27 1 3.5831 -5.7306 0.0034 28 1 1.5353 -7.4611 -0.8852 29 1 1.5357 -7.4595 0.8947 30 1 3.9364 -8.0786 0.8955 31 1 3.9367 -8.0804 -0.8844 32 1 2.2158 -9.8651 -0.8837 33 1 2.2151 -9.8639 0.8962 34 1 4.0036 -11.9351 1.6520 35 1 4.7406 -10.3329 1.9475 36 1 6.7487 -10.9187 0.8580 37 1 6.2411 -12.5789 1.3158 38 1 6.5791 -11.7844 -1.3317 39 1 5.4108 -13.0502 -0.8392 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000244303189.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:06 Heat of formation + Delta-G solvation = -105.535352 kcal Electronic energy + Delta-G solvation = -19676.067811 eV Core-core repulsion = 16423.935953 eV Total energy + Delta-G solvation = -3252.131858 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.32518 -40.85322 -37.62898 -36.87691 -36.02610 -34.58626 -34.10216 -31.40107 -29.16778 -28.41932 -26.53730 -24.54298 -22.95216 -22.65899 -21.90369 -20.37222 -19.73586 -18.09344 -17.84903 -17.48581 -17.13552 -16.92054 -16.39865 -16.30911 -15.59615 -15.30134 -14.97350 -14.70947 -14.62153 -14.26761 -14.09045 -14.03022 -13.44203 -13.27970 -13.18945 -12.88952 -12.71248 -12.60270 -12.26658 -12.21976 -11.92082 -11.79837 -11.47630 -11.29422 -10.84349 -10.80593 -10.29134 -9.72974 -9.59650 -8.28313 -6.44870 1.43404 1.46567 1.52402 1.57602 1.82460 2.12889 2.23050 2.40261 3.06552 3.45998 3.53270 3.67968 3.92769 3.93120 4.07771 4.14587 4.27502 4.41073 4.52871 4.66349 4.75293 4.76458 4.91597 5.02048 5.03501 5.12895 5.13738 5.26203 5.26795 5.48318 5.51295 5.60039 5.67642 5.85008 6.15581 6.25436 6.66860 7.14651 7.24189 7.30481 7.71055 8.84177 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.041198 B = 0.002557 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.473981 B =10947.067415 C =11163.837825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.988 3.012 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.255 1.255 7 C -0.555 4.555 8 H 0.084 0.916 9 C 0.284 3.716 10 N -0.723 5.723 11 C 0.689 3.311 12 O -0.650 6.650 13 N -0.733 5.733 14 C 0.143 3.857 15 C -0.126 4.126 16 C 0.127 3.873 17 N -0.619 5.619 18 C 0.092 3.908 19 C -0.121 4.121 20 C -0.151 4.151 21 C 0.497 3.503 22 O -0.592 6.592 23 H 0.269 0.731 24 H -0.016 1.016 25 H -0.013 1.013 26 H 0.405 0.595 27 H 0.410 0.590 28 H 0.046 0.954 29 H 0.066 0.934 30 H 0.094 0.906 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.109 0.891 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.118 0.882 38 H 0.104 0.896 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.716 -25.107 5.823 30.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.810 3.190 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.178 1.178 7 C -0.593 4.593 8 H 0.102 0.898 9 C 0.161 3.839 10 N -0.377 5.377 11 C 0.389 3.611 12 O -0.533 6.533 13 N -0.391 5.391 14 C 0.018 3.982 15 C -0.165 4.165 16 C 0.004 3.996 17 N -0.352 5.352 18 C -0.029 4.029 19 C -0.158 4.158 20 C -0.190 4.190 21 C 0.287 3.713 22 O -0.473 6.473 23 H 0.078 0.922 24 H 0.002 0.998 25 H 0.005 0.995 26 H 0.240 0.760 27 H 0.246 0.754 28 H 0.064 0.936 29 H 0.085 0.915 30 H 0.113 0.887 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.127 0.873 34 H 0.107 0.893 35 H 0.113 0.887 36 H 0.106 0.894 37 H 0.136 0.864 38 H 0.122 0.878 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 15.237 -25.021 5.273 29.766 hybrid contribution 0.347 1.195 -0.373 1.299 sum 15.584 -23.826 4.899 28.889 Atomic orbital electron populations 1.70149 1.08294 1.28584 1.49935 1.26095 0.95814 1.03941 0.93869 0.85118 0.78468 0.76812 0.78554 1.19698 1.20868 1.17844 1.21601 0.94312 0.90444 1.52921 0.89808 1.18418 0.88138 0.83380 0.93956 1.45302 1.10916 1.03831 1.77669 1.16340 0.85137 0.81666 0.77963 1.90836 1.16770 1.84996 1.60657 1.44903 1.09050 1.04713 1.80407 1.21064 0.96727 0.78817 1.01585 1.21971 0.97104 0.93800 1.03643 1.21248 0.87417 0.86881 1.04075 1.48533 1.32724 1.45617 1.08278 1.22435 0.94065 1.00176 0.86234 1.22648 0.96184 1.03754 0.93253 1.22379 0.96726 1.00420 0.99518 1.21918 0.84772 0.80740 0.83916 1.90715 1.69393 1.63648 1.23495 0.92222 0.99829 0.99506 0.75983 0.75353 0.93586 0.91539 0.88726 0.92243 0.91734 0.87301 0.89280 0.88727 0.89384 0.86360 0.87770 0.86410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.99 13.29 21.45 0.28 -56.71 16 2 C 0.00 0.13 5.46 84.66 0.46 0.59 16 3 Si 0.99 42.75 29.54 68.60 2.03 44.77 16 4 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 6 H -0.25 -10.21 7.11 99.48 0.71 -9.50 16 7 C -0.55 -30.75 9.28 25.60 0.24 -30.52 16 8 H 0.08 4.18 7.60 -2.91 -0.02 4.16 16 9 C 0.28 16.17 5.43 85.63 0.46 16.63 16 10 N -0.72 -32.16 5.55 -482.31 -2.68 -34.84 16 11 C 0.69 29.80 8.57 179.05 1.53 31.33 16 12 O -0.65 -34.72 16.34 -3.98 -0.07 -34.79 16 13 N -0.73 -21.89 5.56 -478.55 -2.66 -24.55 16 14 C 0.14 3.62 5.67 86.38 0.49 4.11 16 15 C -0.13 -2.20 5.65 30.59 0.17 -2.02 16 16 C 0.13 2.04 5.94 86.38 0.51 2.55 16 17 N -0.62 -8.97 2.94 -817.66 -2.40 -11.37 16 18 C 0.09 0.52 7.34 86.83 0.64 1.16 16 19 C -0.12 -0.36 7.18 31.65 0.23 -0.14 16 20 C -0.15 -1.39 6.86 30.59 0.21 -1.18 16 21 C 0.50 9.81 8.03 87.87 0.71 10.51 16 22 O -0.59 -18.38 17.60 -3.05 -0.05 -18.43 16 23 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 24 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 25 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 26 H 0.40 14.75 8.34 -92.71 -0.77 13.98 16 27 H 0.41 9.26 8.49 -92.71 -0.79 8.48 16 28 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.06 1.35 7.93 -2.39 -0.02 1.33 16 33 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 35 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 36 H 0.09 0.22 8.14 -2.39 -0.02 0.21 16 37 H 0.12 -0.22 8.14 -2.39 -0.02 -0.24 16 38 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -84.69 334.06 -0.40 -85.09 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: -0.50 Total: 17.80 kcal Atomic # 6 Polarization: 27.38 SS G_CDS: 5.65 Total: 33.03 kcal Atomic # 7 Polarization: -120.01 SS G_CDS: -7.46 Total: -127.47 kcal Atomic # 8 Polarization: -53.10 SS G_CDS: -0.12 Total: -53.22 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.77 kcal Total: -84.69 -0.40 -85.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000244303189.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.444 kcal (2) G-P(sol) polarization free energy of solvation -84.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds