Wall clock time and date at job start Mon Mar 30 2020 04:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00189 * 2 1 4 4 C 1.53001 * 109.46872 * 265.48342 * 3 2 1 5 5 C 1.50700 * 115.54804 * 174.59000 * 4 3 2 6 6 H 1.08001 * 120.00121 * 145.19840 * 5 4 3 7 7 C 1.37881 * 120.00137 * 325.20312 * 5 4 3 8 8 N 1.31513 * 119.99942 * 163.35592 * 7 5 4 9 9 Si 1.86796 * 119.99837 * 343.35189 * 7 5 4 10 10 H 1.48500 * 109.46962 * 95.16450 * 9 7 5 11 11 H 1.48495 * 109.47227 * 215.16188 * 9 7 5 12 12 H 1.48496 * 109.47266 * 335.16192 * 9 7 5 13 13 C 1.52993 * 117.50191 * 28.92067 * 4 3 2 14 14 C 1.52997 * 117.50083 * 320.25951 * 4 3 2 15 15 C 1.46895 * 111.00041 * 123.95273 * 2 1 3 16 16 H 1.08998 * 110.45980 * 299.72852 * 15 2 1 17 17 C 1.54476 * 110.51411 * 176.97290 * 15 2 1 18 18 O 1.44428 * 104.80680 * 217.37551 * 17 15 2 19 19 C 1.44433 * 105.27102 * 40.51478 * 18 17 15 20 20 C 1.54477 * 104.80095 * 319.48545 * 19 18 17 21 21 H 1.08994 * 110.62533 * 142.68647 * 20 19 18 22 22 C 1.50701 * 110.51112 * 265.33444 * 20 19 18 23 23 O 1.20828 * 119.99620 * 114.64787 * 22 20 19 24 24 O 1.34227 * 120.00190 * 294.64800 * 22 20 19 25 25 H 1.08998 * 109.47027 * 64.52038 * 1 2 3 26 26 H 1.09009 * 109.46894 * 184.51734 * 1 2 3 27 27 H 1.08991 * 109.47084 * 304.52215 * 1 2 3 28 28 H 1.09000 * 109.47292 * 145.48017 * 3 2 1 29 29 H 1.09001 * 109.46954 * 25.47698 * 3 2 1 30 30 H 0.97007 * 120.00022 * 179.97438 * 8 7 5 31 31 H 1.09001 * 117.50294 * 359.97438 * 13 4 3 32 32 H 1.09008 * 117.50039 * 145.02117 * 13 4 3 33 33 H 1.09002 * 117.49874 * 214.98312 * 14 4 3 34 34 H 1.09001 * 117.49851 * 359.97438 * 14 4 3 35 35 H 1.09002 * 110.37540 * 336.20945 * 17 15 2 36 36 H 1.09001 * 110.37309 * 98.54764 * 17 15 2 37 37 H 1.08998 * 110.36837 * 200.65570 * 19 18 17 38 38 H 1.08998 * 110.46417 * 78.36966 * 19 18 17 39 39 H 0.96698 * 117.00046 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 2.2843 1.8067 -1.4380 5 6 2.7119 3.2416 -1.6093 6 1 3.4320 3.5034 -2.3704 7 6 2.1839 4.2203 -0.7941 8 7 2.7733 5.3928 -0.7078 9 14 0.6313 3.8809 0.1875 10 1 0.9982 3.4403 1.5573 11 1 -0.1843 5.1192 0.2677 12 1 -0.1542 2.8133 -0.4821 13 6 1.4346 1.1856 -2.5484 14 6 2.8981 0.7695 -2.3805 15 6 1.9954 -0.7659 1.1376 16 1 1.6592 -0.3303 2.0784 17 6 3.5383 -0.8224 1.0846 18 8 3.8750 -2.1495 1.5442 19 6 2.8944 -3.0214 0.9407 20 6 1.5621 -2.2459 1.0407 21 1 0.9553 -2.4087 0.1501 22 6 0.8039 -2.6561 2.2768 23 8 0.6163 -1.8569 3.1634 24 8 0.3370 -3.9092 2.3929 25 1 -0.3633 0.4421 -0.9277 26 1 -0.3633 -1.0246 0.0809 27 1 -0.3633 0.5824 0.8466 28 1 2.9162 1.4072 0.5824 29 1 1.2596 2.0431 0.4421 30 1 2.4016 6.0815 -0.1346 31 1 0.6701 0.4664 -2.2546 32 1 1.1852 1.8146 -3.4030 33 1 3.6109 1.1249 -3.1246 34 1 3.0965 -0.2230 -1.9759 35 1 3.8886 -0.6743 0.0631 36 1 3.9684 -0.0710 1.7468 37 1 2.8299 -3.9592 1.4924 38 1 3.1450 -3.2123 -0.1028 39 1 -0.1435 -4.1253 3.2037 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250454119.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:43 Heat of formation + Delta-G solvation = -77.699237 kcal Electronic energy + Delta-G solvation = -22174.143746 eV Core-core repulsion = 18890.926201 eV Total energy + Delta-G solvation = -3283.217544 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.03298 -39.23284 -37.66091 -36.36183 -34.95162 -32.21760 -31.58649 -29.18639 -27.63051 -25.62955 -24.45768 -23.66613 -21.82357 -21.18643 -19.90243 -18.95919 -18.20192 -17.42356 -16.85198 -16.28437 -15.93353 -15.62656 -15.40217 -14.91459 -14.32910 -14.03405 -13.81605 -13.30792 -12.96592 -12.78052 -12.57636 -12.20161 -11.92486 -11.85173 -11.67593 -11.50140 -11.26453 -11.15650 -10.92996 -10.76768 -10.44671 -10.22576 -9.79584 -9.72976 -9.44492 -9.17274 -8.77266 -8.25541 -7.91220 -6.20464 -4.09470 1.97473 2.71480 3.17480 3.33194 3.35265 3.76787 4.14815 4.23596 4.32789 4.60064 4.83799 4.87313 5.11545 5.25637 5.28302 5.39063 5.45319 5.49023 5.54127 5.68490 5.85257 5.86656 5.95395 6.02498 6.12596 6.15304 6.25998 6.45794 6.59758 6.68208 6.75736 6.91537 7.15373 7.25391 7.31944 7.37988 7.65300 7.78627 8.50510 8.88364 9.45844 10.91980 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.024407 B = 0.006509 C = 0.006038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.952141 B = 4300.807529 C = 4636.449854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.525 5.525 3 C 0.079 3.921 4 C 0.015 3.985 5 C -0.483 4.483 6 H 0.078 0.922 7 C 0.076 3.924 8 N -0.886 5.886 9 Si 0.885 3.115 10 H -0.286 1.286 11 H -0.299 1.299 12 H -0.260 1.260 13 C -0.206 4.206 14 C -0.175 4.175 15 C 0.053 3.947 16 H 0.078 0.922 17 C 0.052 3.948 18 O -0.372 6.372 19 C 0.063 3.937 20 C -0.116 4.116 21 H 0.134 0.866 22 C 0.488 3.512 23 O -0.507 6.507 24 O -0.515 6.515 25 H 0.085 0.915 26 H 0.057 0.943 27 H 0.024 0.976 28 H 0.072 0.928 29 H 0.040 0.960 30 H 0.265 0.735 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.082 0.918 39 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.225 -17.741 4.192 18.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.250 5.250 3 C -0.047 4.047 4 C 0.013 3.987 5 C -0.521 4.521 6 H 0.096 0.904 7 C -0.127 4.127 8 N -0.523 5.523 9 Si 0.716 3.284 10 H -0.214 1.214 11 H -0.227 1.227 12 H -0.185 1.185 13 C -0.243 4.243 14 C -0.212 4.212 15 C -0.056 4.056 16 H 0.096 0.904 17 C -0.025 4.025 18 O -0.290 6.290 19 C -0.014 4.014 20 C -0.136 4.136 21 H 0.151 0.849 22 C 0.329 3.671 23 O -0.394 6.394 24 O -0.328 6.328 25 H 0.103 0.897 26 H 0.076 0.924 27 H 0.042 0.958 28 H 0.091 0.909 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.105 0.895 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.100 0.900 39 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -3.709 -17.501 3.880 18.305 hybrid contribution -1.816 0.309 1.711 2.514 sum -5.524 -17.192 5.591 18.903 Atomic orbital electron populations 1.22659 0.87802 1.00634 1.02059 1.62165 1.07530 1.15719 1.39580 1.22175 0.98560 0.85031 0.98949 1.19253 0.99721 0.93441 0.86280 1.20404 1.25278 0.87595 1.18805 0.90399 1.24990 0.96622 0.95176 0.95957 1.69963 1.38225 1.05546 1.38519 0.86939 0.84890 0.76759 0.79790 1.21424 1.22691 1.18532 1.23155 0.93210 1.04252 1.03710 1.22634 0.95562 0.98969 1.04072 1.23113 0.96034 0.91011 0.95426 0.90435 1.23650 0.92399 0.84600 1.01859 1.89155 1.51455 1.17561 1.70836 1.23294 0.84290 0.93752 1.00056 1.22454 0.98464 0.97440 0.95241 0.84869 1.23211 0.76140 0.79237 0.88486 1.90724 1.54854 1.52407 1.41392 1.84513 1.68599 1.32159 1.47480 0.89665 0.92445 0.95765 0.90940 0.94253 0.92474 0.90452 0.90853 0.91003 0.90352 0.89521 0.88385 0.88511 0.90028 0.73131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 8.51 60.07 0.51 0.77 16 2 N -0.53 -8.87 3.04 -233.00 -0.71 -9.58 16 3 C 0.08 1.63 4.14 -3.82 -0.02 1.62 16 4 C 0.01 0.33 1.84 -155.67 -0.29 0.04 16 5 C -0.48 -13.26 9.54 -34.44 -0.33 -13.59 16 6 H 0.08 2.33 8.06 -52.49 -0.42 1.90 16 7 C 0.08 2.13 5.39 -17.82 -0.10 2.03 16 8 N -0.89 -26.44 13.96 55.43 0.77 -25.67 16 9 Si 0.88 21.68 24.22 -169.99 -4.12 17.56 16 10 H -0.29 -6.94 6.92 56.52 0.39 -6.54 16 11 H -0.30 -7.43 7.11 56.52 0.40 -7.02 16 12 H -0.26 -6.04 6.73 56.52 0.38 -5.66 16 13 C -0.21 -4.22 9.35 -26.70 -0.25 -4.47 16 14 C -0.18 -3.50 9.65 -26.70 -0.26 -3.76 16 15 C 0.05 0.81 2.38 -66.15 -0.16 0.66 16 16 H 0.08 1.34 6.50 -51.93 -0.34 1.01 16 17 C 0.05 0.76 5.84 37.93 0.22 0.99 16 18 O -0.37 -5.29 11.65 -35.23 -0.41 -5.70 16 19 C 0.06 0.70 7.17 37.93 0.27 0.97 16 20 C -0.12 -1.41 2.66 -90.20 -0.24 -1.65 16 21 H 0.13 1.45 6.70 -51.93 -0.35 1.10 16 22 C 0.49 6.01 7.54 36.01 0.27 6.29 16 23 O -0.51 -8.01 16.04 -18.75 -0.30 -8.31 16 24 O -0.52 -4.52 13.32 -39.25 -0.52 -5.05 16 25 H 0.08 1.42 5.89 -51.93 -0.31 1.11 16 26 H 0.06 0.75 6.32 -51.92 -0.33 0.42 16 27 H 0.02 0.41 7.95 -51.93 -0.41 0.00 16 28 H 0.07 1.49 6.32 -51.93 -0.33 1.16 16 29 H 0.04 0.90 1.76 -51.93 -0.09 0.81 16 30 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.08 1.45 5.04 -51.93 -0.26 1.18 16 32 H 0.07 1.56 8.14 -51.92 -0.42 1.14 16 33 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 34 H 0.08 1.41 7.14 -51.93 -0.37 1.04 16 35 H 0.09 1.31 7.36 -51.93 -0.38 0.93 16 36 H 0.10 1.45 7.87 -51.93 -0.41 1.04 16 37 H 0.10 0.91 7.77 -51.93 -0.40 0.50 16 38 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.41 1.91 9.10 45.56 0.41 2.32 16 LS Contribution 303.51 15.07 4.57 4.57 Total: -1.00 -31.83 303.51 -5.49 -37.32 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -4.42 Total: 4.95 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: -0.36 Total: -10.10 kcal Atomic # 7 Polarization: -35.31 SS G_CDS: 0.06 Total: -35.24 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: -1.23 Total: -19.06 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.12 Total: 17.56 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.83 -5.49 -37.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250454119.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.380 kcal (2) G-P(sol) polarization free energy of solvation -31.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds