Wall clock time and date at job start Mon Mar 30 2020 04:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00189 * 2 1 4 4 C 1.53001 * 109.46872 * 265.48342 * 3 2 1 5 5 C 1.50700 * 115.54804 * 174.59000 * 4 3 2 6 6 H 1.08001 * 120.00121 * 145.19840 * 5 4 3 7 7 C 1.37881 * 120.00137 * 325.20312 * 5 4 3 8 8 N 1.31513 * 119.99942 * 163.35592 * 7 5 4 9 9 Si 1.86796 * 119.99837 * 343.35189 * 7 5 4 10 10 H 1.48500 * 109.46962 * 95.16450 * 9 7 5 11 11 H 1.48495 * 109.47227 * 215.16188 * 9 7 5 12 12 H 1.48496 * 109.47266 * 335.16192 * 9 7 5 13 13 C 1.52993 * 117.50191 * 28.92067 * 4 3 2 14 14 C 1.52997 * 117.50083 * 320.25951 * 4 3 2 15 15 C 1.46895 * 111.00041 * 123.95273 * 2 1 3 16 16 H 1.08998 * 110.45980 * 299.72852 * 15 2 1 17 17 C 1.54476 * 110.51411 * 176.97290 * 15 2 1 18 18 O 1.44428 * 104.80680 * 217.37551 * 17 15 2 19 19 C 1.44433 * 105.27102 * 40.51478 * 18 17 15 20 20 C 1.54477 * 104.80095 * 319.48545 * 19 18 17 21 21 H 1.08994 * 110.62533 * 142.68647 * 20 19 18 22 22 C 1.50701 * 110.51112 * 265.33444 * 20 19 18 23 23 O 1.20828 * 119.99620 * 114.64787 * 22 20 19 24 24 O 1.34227 * 120.00190 * 294.64800 * 22 20 19 25 25 H 1.08998 * 109.47027 * 64.52038 * 1 2 3 26 26 H 1.09009 * 109.46894 * 184.51734 * 1 2 3 27 27 H 1.08991 * 109.47084 * 304.52215 * 1 2 3 28 28 H 1.09000 * 109.47292 * 145.48017 * 3 2 1 29 29 H 1.09001 * 109.46954 * 25.47698 * 3 2 1 30 30 H 0.97007 * 120.00022 * 179.97438 * 8 7 5 31 31 H 1.09001 * 117.50294 * 359.97438 * 13 4 3 32 32 H 1.09008 * 117.50039 * 145.02117 * 13 4 3 33 33 H 1.09002 * 117.49874 * 214.98312 * 14 4 3 34 34 H 1.09001 * 117.49851 * 359.97438 * 14 4 3 35 35 H 1.09002 * 110.37540 * 336.20945 * 17 15 2 36 36 H 1.09001 * 110.37309 * 98.54764 * 17 15 2 37 37 H 1.08998 * 110.36837 * 200.65570 * 19 18 17 38 38 H 1.08998 * 110.46417 * 78.36966 * 19 18 17 39 39 H 0.96698 * 117.00046 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 2.2843 1.8067 -1.4380 5 6 2.7119 3.2416 -1.6093 6 1 3.4320 3.5034 -2.3704 7 6 2.1839 4.2203 -0.7941 8 7 2.7733 5.3928 -0.7078 9 14 0.6313 3.8809 0.1875 10 1 0.9982 3.4403 1.5573 11 1 -0.1843 5.1192 0.2677 12 1 -0.1542 2.8133 -0.4821 13 6 1.4346 1.1856 -2.5484 14 6 2.8981 0.7695 -2.3805 15 6 1.9954 -0.7659 1.1376 16 1 1.6592 -0.3303 2.0784 17 6 3.5383 -0.8224 1.0846 18 8 3.8750 -2.1495 1.5442 19 6 2.8944 -3.0214 0.9407 20 6 1.5621 -2.2459 1.0407 21 1 0.9553 -2.4087 0.1501 22 6 0.8039 -2.6561 2.2768 23 8 0.6163 -1.8569 3.1634 24 8 0.3370 -3.9092 2.3929 25 1 -0.3633 0.4421 -0.9277 26 1 -0.3633 -1.0246 0.0809 27 1 -0.3633 0.5824 0.8466 28 1 2.9162 1.4072 0.5824 29 1 1.2596 2.0431 0.4421 30 1 2.4016 6.0815 -0.1346 31 1 0.6701 0.4664 -2.2546 32 1 1.1852 1.8146 -3.4030 33 1 3.6109 1.1249 -3.1246 34 1 3.0965 -0.2230 -1.9759 35 1 3.8886 -0.6743 0.0631 36 1 3.9684 -0.0710 1.7468 37 1 2.8299 -3.9592 1.4924 38 1 3.1450 -3.2123 -0.1028 39 1 -0.1435 -4.1253 3.2037 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250454119.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:43 Heat of formation + Delta-G solvation = -101.843938 kcal Electronic energy + Delta-G solvation = -22175.190739 eV Core-core repulsion = 18890.926201 eV Total energy + Delta-G solvation = -3284.264537 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.03375 -40.33809 -39.07784 -37.23654 -36.40172 -34.32042 -32.65412 -30.32454 -29.24685 -27.40038 -25.56868 -24.86016 -22.99240 -22.77989 -20.98941 -20.80231 -19.10729 -18.62758 -18.15481 -17.74448 -17.45488 -16.75675 -16.52666 -16.12224 -15.82418 -15.36290 -15.22089 -14.80817 -14.38702 -14.25871 -13.94612 -13.59379 -13.32633 -13.15910 -12.84337 -12.72181 -12.61465 -12.43389 -12.27435 -12.26587 -11.84265 -11.76718 -11.52347 -11.29724 -11.05993 -10.82066 -10.55374 -10.16433 -9.37026 -8.37497 -6.28786 1.06395 1.21057 1.31648 1.41596 1.87498 2.26077 2.63747 2.87342 3.06164 3.12580 3.56942 3.65116 3.87401 4.08660 4.14620 4.23703 4.25523 4.30387 4.35023 4.49038 4.52393 4.64231 4.68650 4.72963 4.76471 4.84004 4.88162 5.01125 5.16698 5.27131 5.46233 5.51057 5.59242 5.66096 5.74805 5.88553 6.00363 6.36052 6.72007 6.89202 7.28809 8.79118 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.024407 B = 0.006509 C = 0.006038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.952141 B = 4300.807529 C = 4636.449854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.514 5.514 3 C 0.087 3.913 4 C -0.016 4.016 5 C -0.488 4.488 6 H 0.035 0.965 7 C 0.023 3.977 8 N -0.937 5.937 9 Si 0.946 3.054 10 H -0.285 1.285 11 H -0.305 1.305 12 H -0.237 1.237 13 C -0.189 4.189 14 C -0.154 4.154 15 C 0.052 3.948 16 H 0.055 0.945 17 C 0.054 3.946 18 O -0.387 6.387 19 C 0.062 3.938 20 C -0.111 4.111 21 H 0.156 0.844 22 C 0.495 3.505 23 O -0.548 6.548 24 O -0.501 6.501 25 H 0.081 0.919 26 H 0.092 0.908 27 H 0.011 0.989 28 H 0.065 0.935 29 H 0.022 0.978 30 H 0.266 0.734 31 H 0.105 0.895 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.107 0.893 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.117 0.883 38 H 0.103 0.897 39 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.784 -21.380 4.197 22.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.238 5.238 3 C -0.040 4.040 4 C -0.018 4.018 5 C -0.525 4.525 6 H 0.053 0.947 7 C -0.175 4.175 8 N -0.576 5.576 9 Si 0.776 3.224 10 H -0.213 1.213 11 H -0.234 1.234 12 H -0.161 1.161 13 C -0.226 4.226 14 C -0.191 4.191 15 C -0.057 4.057 16 H 0.073 0.927 17 C -0.022 4.022 18 O -0.306 6.306 19 C -0.015 4.015 20 C -0.130 4.130 21 H 0.173 0.827 22 C 0.338 3.662 23 O -0.439 6.439 24 O -0.314 6.314 25 H 0.100 0.900 26 H 0.110 0.890 27 H 0.029 0.971 28 H 0.083 0.917 29 H 0.039 0.961 30 H 0.075 0.925 31 H 0.123 0.877 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.125 0.875 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.135 0.865 38 H 0.121 0.879 39 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -5.283 -21.209 3.873 22.197 hybrid contribution -1.260 1.342 1.666 2.483 sum -6.543 -19.867 5.539 21.638 Atomic orbital electron populations 1.22753 0.86848 1.02675 1.01257 1.62094 1.08258 1.13182 1.40303 1.21863 0.98010 0.87034 0.97044 1.19150 1.02743 0.91515 0.88367 1.20638 1.23966 0.90648 1.17294 0.94661 1.25722 0.99448 0.94872 0.97459 1.70091 1.40158 1.06881 1.40463 0.85945 0.81223 0.76705 0.78532 1.21270 1.23399 1.16111 1.23138 0.94196 1.03748 1.01565 1.22660 0.95127 0.99127 1.02232 1.23063 0.96242 0.92779 0.93633 0.92707 1.23521 0.92208 0.85084 1.01436 1.89145 1.52534 1.17474 1.71404 1.23565 0.82730 0.93589 1.01582 1.22418 0.99477 0.95015 0.96082 0.82688 1.23191 0.75504 0.79673 0.87850 1.90731 1.56569 1.53796 1.42798 1.84458 1.68203 1.29985 1.48759 0.90019 0.88968 0.97062 0.91702 0.96098 0.92482 0.87657 0.91995 0.91956 0.87481 0.89694 0.89489 0.86490 0.87854 0.70788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.35 8.51 127.69 1.09 1.43 16 2 N -0.51 -15.88 3.04 -891.09 -2.71 -18.59 16 3 C 0.09 3.52 4.14 86.30 0.36 3.88 16 4 C -0.02 -0.73 1.84 -52.93 -0.10 -0.82 16 5 C -0.49 -27.51 9.54 25.60 0.24 -27.26 16 6 H 0.04 2.22 8.06 -2.91 -0.02 2.19 16 7 C 0.02 1.36 5.39 84.66 0.46 1.81 16 8 N -0.94 -58.23 13.96 21.45 0.30 -57.93 16 9 Si 0.95 45.59 24.22 68.60 1.66 47.25 16 10 H -0.28 -13.52 6.92 99.48 0.69 -12.83 16 11 H -0.31 -14.85 7.11 99.48 0.71 -14.15 16 12 H -0.24 -10.38 6.73 99.48 0.67 -9.71 16 13 C -0.19 -7.30 9.35 30.61 0.29 -7.01 16 14 C -0.15 -5.84 9.65 30.62 0.30 -5.55 16 15 C 0.05 1.46 2.38 45.93 0.11 1.57 16 16 H 0.06 1.85 6.50 -2.39 -0.02 1.83 16 17 C 0.05 1.53 5.84 72.48 0.42 1.95 16 18 O -0.39 -10.07 11.65 -148.98 -1.74 -11.81 16 19 C 0.06 1.11 7.17 72.48 0.52 1.63 16 20 C -0.11 -2.24 2.66 -10.52 -0.03 -2.27 16 21 H 0.16 2.49 6.70 -2.39 -0.02 2.48 16 22 C 0.49 10.53 7.54 71.24 0.54 11.06 16 23 O -0.55 -16.28 16.04 21.96 0.35 -15.93 16 24 O -0.50 -6.65 13.32 -51.38 -0.68 -7.33 16 25 H 0.08 2.37 5.89 -2.39 -0.01 2.36 16 26 H 0.09 1.96 6.32 -2.38 -0.02 1.94 16 27 H 0.01 0.34 7.95 -2.39 -0.02 0.32 16 28 H 0.06 2.67 6.32 -2.39 -0.02 2.65 16 29 H 0.02 0.94 1.76 -2.39 0.00 0.94 16 30 H 0.27 15.55 8.31 -92.70 -0.77 14.78 16 31 H 0.11 3.49 5.04 -2.39 -0.01 3.48 16 32 H 0.06 2.53 8.14 -2.38 -0.02 2.51 16 33 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.11 3.45 7.14 -2.39 -0.02 3.43 16 35 H 0.08 2.39 7.36 -2.39 -0.02 2.38 16 36 H 0.09 2.57 7.87 -2.39 -0.02 2.56 16 37 H 0.12 1.65 7.77 -2.39 -0.02 1.63 16 38 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.43 2.30 9.10 -74.06 -0.67 1.62 16 Total: -1.00 -71.34 303.51 1.73 -69.61 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: 0.36 Total: 14.30 kcal Atomic # 6 Polarization: -23.76 SS G_CDS: 4.19 Total: -19.57 kcal Atomic # 7 Polarization: -74.11 SS G_CDS: -2.41 Total: -76.52 kcal Atomic # 8 Polarization: -33.00 SS G_CDS: -2.07 Total: -35.07 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 1.66 Total: 47.25 kcal Total: -71.34 1.73 -69.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250454119.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.232 kcal (2) G-P(sol) polarization free energy of solvation -71.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds