Wall clock time and date at job start Mon Mar 30 2020 04:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47454 * 2 1 4 4 C 1.50704 * 109.47195 * 240.00295 * 2 1 3 5 5 H 1.08000 * 119.99820 * 273.51315 * 4 2 1 6 6 C 1.37872 * 119.99965 * 93.51552 * 4 2 1 7 7 N 1.31520 * 119.99398 * 178.62337 * 6 4 2 8 8 Si 1.86800 * 120.00261 * 358.62411 * 6 4 2 9 9 H 1.48497 * 109.46860 * 86.11158 * 8 6 4 10 10 H 1.48505 * 109.47019 * 206.10839 * 8 6 4 11 11 H 1.48492 * 109.46805 * 326.10879 * 8 6 4 12 12 N 1.46503 * 109.47398 * 120.00120 * 2 1 3 13 13 C 1.46492 * 119.99914 * 60.00010 * 12 2 1 14 14 C 1.34779 * 119.99788 * 240.00185 * 12 2 1 15 15 O 1.21284 * 120.00128 * 5.08516 * 14 12 2 16 16 C 1.50700 * 119.99785 * 185.08681 * 14 12 2 17 17 H 1.09003 * 110.43304 * 25.62100 * 16 14 12 18 18 C 1.54264 * 110.48407 * 263.08346 * 16 14 12 19 19 C 1.53877 * 106.59653 * 217.71228 * 18 16 14 20 20 C 1.54263 * 106.59940 * 359.97438 * 19 18 16 21 21 C 1.54889 * 110.48605 * 148.16290 * 16 14 12 22 22 H 1.09004 * 110.75758 * 38.30658 * 21 16 14 23 23 C 1.50697 * 110.75779 * 274.93780 * 21 16 14 24 24 O 1.20827 * 119.99917 * 359.97438 * 23 21 16 25 25 O 1.34231 * 119.99706 * 180.02562 * 23 21 16 26 26 H 1.09001 * 109.47061 * 58.41603 * 1 2 3 27 27 H 1.09005 * 109.47072 * 178.41412 * 1 2 3 28 28 H 1.09000 * 109.46844 * 298.41048 * 1 2 3 29 29 H 0.97010 * 119.99256 * 179.97438 * 7 6 4 30 30 H 1.09003 * 109.47242 * 95.28474 * 13 12 2 31 31 H 1.09006 * 109.46941 * 215.28325 * 13 12 2 32 32 H 1.08997 * 109.47366 * 335.28253 * 13 12 2 33 33 H 1.09000 * 110.03261 * 336.99134 * 18 16 14 34 34 H 1.08993 * 110.03596 * 98.38167 * 18 16 14 35 35 H 1.08996 * 110.03613 * 119.28465 * 19 18 16 36 36 H 1.09003 * 110.03333 * 240.71828 * 19 18 16 37 37 H 1.09000 * 110.48826 * 142.29032 * 20 19 18 38 38 H 1.08997 * 110.49077 * 264.79991 * 20 19 18 39 39 H 0.96711 * 116.99427 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1583 -1.7830 -1.2212 6 6 2.3311 0.0090 -2.3681 7 7 2.7952 -0.6076 -3.4330 8 14 2.0769 1.8594 -2.3968 9 1 3.2837 2.5333 -1.8539 10 1 1.8472 2.3059 -3.7944 11 1 0.8978 2.2099 -1.5650 12 7 2.0184 -0.6906 1.1962 13 6 1.6645 -2.0931 1.4279 14 6 2.7932 -0.0356 2.0833 15 8 3.0103 1.1491 1.9403 16 6 3.3898 -0.7752 3.2530 17 1 3.4967 -1.8344 3.0190 18 6 2.5193 -0.5856 4.5124 19 6 3.4879 -0.4634 5.7018 20 6 4.9131 -0.5835 5.1238 21 6 4.7598 -0.1643 3.6389 22 1 4.7389 0.9215 3.5450 23 6 5.8631 -0.7533 2.7981 24 8 5.6060 -1.5861 1.9614 25 8 7.1316 -0.3534 2.9796 26 1 -0.3633 0.5382 -0.8754 27 1 -0.3633 -1.0273 -0.0284 28 1 -0.3633 0.4890 0.9039 29 1 3.0051 -0.1015 -4.2336 30 1 2.4619 -2.7356 1.0543 31 1 1.5320 -2.2626 2.4966 32 1 0.7364 -2.3249 0.9055 33 1 1.9235 0.3226 4.4212 34 1 1.8668 -1.4480 4.6485 35 1 3.3621 0.5040 6.1879 36 1 3.3060 -1.2669 6.4156 37 1 5.5934 0.0916 5.6428 38 1 5.2686 -1.6114 5.1957 39 1 7.8048 -0.7600 2.4169 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252770337.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:02 Heat of formation + Delta-G solvation = -164.972245 kcal Electronic energy + Delta-G solvation = -21938.295307 eV Core-core repulsion = 18651.293320 eV Total energy + Delta-G solvation = -3287.001986 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.90789 -40.67268 -38.29846 -37.13602 -37.04233 -34.75067 -32.49758 -30.66116 -29.90319 -27.73146 -27.24991 -24.86433 -23.32173 -21.53717 -21.19298 -19.76705 -19.35048 -18.98296 -18.40843 -17.47329 -17.43095 -16.65470 -16.34908 -15.87847 -15.42787 -15.21201 -14.66913 -14.32286 -14.23453 -14.21657 -13.97908 -13.50352 -13.24676 -13.13323 -13.01252 -12.95633 -12.60976 -12.56048 -12.33266 -12.19288 -12.14151 -11.90079 -11.82630 -11.53947 -11.30160 -11.29158 -10.87388 -10.61708 -9.37819 -8.40385 -6.44548 1.14346 1.22704 1.28121 1.36650 1.66144 2.03486 2.23442 2.32385 3.00817 3.24136 3.53341 3.73397 4.05913 4.25675 4.34465 4.39963 4.43866 4.45474 4.46098 4.51854 4.61016 4.70346 4.72603 4.75940 4.96442 5.01445 5.06062 5.08258 5.18966 5.27158 5.35158 5.44243 5.51551 5.55086 5.78874 6.12488 6.60058 6.72922 6.92200 7.18923 7.33170 8.75688 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.020876 B = 0.006719 C = 0.005950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.902411 B = 4166.375338 C = 4704.392172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.223 3.777 3 H 0.036 0.964 4 C -0.521 4.521 5 H 0.046 0.954 6 C 0.023 3.977 7 N -0.937 5.937 8 Si 0.927 3.073 9 H -0.288 1.288 10 H -0.273 1.273 11 H -0.241 1.241 12 N -0.595 5.595 13 C 0.085 3.915 14 C 0.506 3.494 15 O -0.604 6.604 16 C -0.098 4.098 17 H 0.107 0.893 18 C -0.106 4.106 19 C -0.111 4.111 20 C -0.097 4.097 21 C -0.081 4.081 22 H 0.114 0.886 23 C 0.482 3.518 24 O -0.547 6.547 25 O -0.507 6.507 26 H 0.051 0.949 27 H 0.065 0.935 28 H 0.050 0.950 29 H 0.268 0.732 30 H 0.037 0.963 31 H 0.098 0.902 32 H 0.079 0.921 33 H 0.061 0.939 34 H 0.100 0.900 35 H 0.082 0.918 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.082 0.918 39 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.554 -1.570 21.277 21.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.120 3.880 3 H 0.054 0.946 4 C -0.559 4.559 5 H 0.064 0.936 6 C -0.176 4.176 7 N -0.577 5.577 8 Si 0.752 3.248 9 H -0.214 1.214 10 H -0.198 1.198 11 H -0.165 1.165 12 N -0.324 5.324 13 C -0.057 4.057 14 C 0.295 3.705 15 O -0.487 6.487 16 C -0.119 4.119 17 H 0.126 0.874 18 C -0.143 4.143 19 C -0.149 4.149 20 C -0.135 4.135 21 C -0.100 4.100 22 H 0.131 0.869 23 C 0.326 3.674 24 O -0.438 6.438 25 O -0.321 6.321 26 H 0.070 0.930 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.056 0.944 31 H 0.117 0.883 32 H 0.097 0.903 33 H 0.080 0.920 34 H 0.119 0.881 35 H 0.100 0.900 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.101 0.899 39 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 1.318 -1.019 21.013 21.079 hybrid contribution 0.773 0.410 -1.744 1.951 sum 2.091 -0.610 19.270 19.392 Atomic orbital electron populations 1.22100 0.95497 1.01939 1.00271 1.19069 0.92877 0.93160 0.82884 0.94617 1.21381 1.43723 0.94850 0.95979 0.93550 1.25701 0.93965 1.02565 0.95345 1.70016 1.45437 1.37979 1.04227 0.86062 0.79845 0.81018 0.77868 1.21441 1.19822 1.16474 1.48205 1.49237 1.13223 1.21736 1.21780 1.00959 0.80506 1.02489 1.21135 0.77964 0.87071 0.84302 1.90574 1.62919 1.17772 1.77408 1.22181 0.94625 1.00910 0.94213 0.87441 1.22131 0.97802 1.03532 0.90880 1.22123 0.91732 1.04331 0.96670 1.22389 0.99456 1.03052 0.88586 1.22077 0.88340 1.02355 0.97263 0.86850 1.23711 0.83986 0.78566 0.81164 1.90781 1.84234 1.33747 1.34997 1.84471 1.17900 1.66434 1.63263 0.93039 0.91623 0.93139 0.92295 0.94400 0.88337 0.90276 0.92010 0.88137 0.89975 0.88118 0.88209 0.89909 0.71399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.81 8.98 71.98 0.65 -5.16 16 2 C 0.22 11.15 2.20 44.24 0.10 11.25 16 3 H 0.04 1.98 4.42 -2.39 -0.01 1.97 16 4 C -0.52 -30.61 8.83 25.60 0.23 -30.38 16 5 H 0.05 2.95 7.65 -2.91 -0.02 2.93 16 6 C 0.02 1.41 5.47 84.65 0.46 1.87 16 7 N -0.94 -59.94 13.96 21.45 0.30 -59.64 16 8 Si 0.93 47.60 26.45 68.60 1.81 49.41 16 9 H -0.29 -15.37 7.11 99.48 0.71 -14.66 16 10 H -0.27 -13.25 7.11 99.48 0.71 -12.54 16 11 H -0.24 -11.46 6.32 99.48 0.63 -10.83 16 12 N -0.59 -25.76 2.75 -826.79 -2.28 -28.04 16 13 C 0.09 2.89 8.66 127.77 1.11 3.99 16 14 C 0.51 21.10 6.61 87.66 0.58 21.68 16 15 O -0.60 -29.71 15.30 -3.04 -0.05 -29.76 16 16 C -0.10 -2.89 1.41 -10.47 -0.01 -2.90 16 17 H 0.11 3.15 6.08 -2.39 -0.01 3.14 16 18 C -0.11 -2.09 6.19 31.32 0.19 -1.90 16 19 C -0.11 -1.50 6.80 31.32 0.21 -1.29 16 20 C -0.10 -1.59 6.27 31.73 0.20 -1.39 16 21 C -0.08 -2.21 2.73 -10.19 -0.03 -2.23 16 22 H 0.11 3.46 7.29 -2.38 -0.02 3.44 16 23 C 0.48 15.08 7.63 71.23 0.54 15.63 16 24 O -0.55 -21.91 16.48 21.96 0.36 -21.55 16 25 O -0.51 -12.10 13.42 -51.43 -0.69 -12.79 16 26 H 0.05 2.17 7.10 -2.39 -0.02 2.15 16 27 H 0.06 2.49 6.73 -2.38 -0.02 2.47 16 28 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.27 16.05 8.31 -92.70 -0.77 15.28 16 30 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.10 2.38 6.63 -2.38 -0.02 2.37 16 32 H 0.08 2.58 6.47 -2.39 -0.02 2.57 16 33 H 0.06 1.41 7.83 -2.39 -0.02 1.39 16 34 H 0.10 1.49 7.90 -2.39 -0.02 1.47 16 35 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.08 1.20 8.04 -2.39 -0.02 1.18 16 39 H 0.42 6.83 9.10 -74.05 -0.67 6.15 16 Total: -1.00 -82.44 314.96 4.00 -78.43 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: 0.31 Total: 14.77 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: 4.23 Total: 9.17 kcal Atomic # 7 Polarization: -85.70 SS G_CDS: -1.98 Total: -87.68 kcal Atomic # 8 Polarization: -63.73 SS G_CDS: -0.38 Total: -64.10 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 1.81 Total: 49.41 kcal Total: -82.44 4.00 -78.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252770337.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.540 kcal (2) G-P(sol) polarization free energy of solvation -82.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds