Wall clock time and date at job start Mon Mar 30 2020 05:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47396 * 2 1 4 4 H 1.09001 * 109.73914 * 54.38421 * 3 2 1 5 5 C 1.53297 * 109.71186 * 174.99900 * 3 2 1 6 6 N 1.46831 * 109.41182 * 173.48722 * 5 3 2 7 7 C 1.46894 * 110.99921 * 170.24089 * 6 5 3 8 8 C 1.50701 * 109.47027 * 190.00247 * 7 6 5 9 9 O 1.21297 * 119.99975 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00231 * 180.02562 * 8 7 6 11 11 C 1.37093 * 120.00146 * 179.97438 * 10 8 7 12 12 H 1.07996 * 120.00421 * 359.97438 * 11 10 8 13 13 C 1.38956 * 120.00095 * 179.97438 * 11 10 8 14 14 N 1.31410 * 119.99895 * 180.02562 * 13 11 10 15 15 Si 1.86800 * 119.99864 * 0.02562 * 13 11 10 16 16 H 1.48496 * 109.47465 * 89.99826 * 15 13 11 17 17 H 1.48500 * 109.47038 * 210.00059 * 15 13 11 18 18 H 1.48501 * 109.47215 * 329.99987 * 15 13 11 19 19 C 1.46826 * 111.56394 * 294.60327 * 6 5 3 20 20 C 1.53302 * 109.39993 * 65.38784 * 19 6 5 21 21 C 1.51437 * 108.24164 * 306.20419 * 20 19 6 22 22 N 1.27954 * 121.11229 * 229.04355 * 21 20 19 23 23 O 1.41603 * 119.99873 * 0.02562 * 22 21 20 24 24 H 1.08999 * 109.47695 * 300.00256 * 1 2 3 25 25 H 1.09006 * 109.46987 * 60.00189 * 1 2 3 26 26 H 1.09002 * 109.47136 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47239 * 239.99466 * 2 1 3 28 28 H 1.09006 * 109.46987 * 119.99811 * 2 1 3 29 29 H 1.09002 * 109.48492 * 53.49919 * 5 3 2 30 30 H 1.08999 * 109.48002 * 293.47142 * 5 3 2 31 31 H 1.09007 * 109.47179 * 309.99431 * 7 6 5 32 32 H 1.08997 * 109.47739 * 70.00013 * 7 6 5 33 33 H 0.97003 * 119.99862 * 359.97438 * 10 8 7 34 34 H 0.97008 * 119.99488 * 180.02562 * 14 13 11 35 35 H 1.08994 * 109.48266 * 185.36320 * 19 6 5 36 36 H 1.09004 * 109.48622 * 305.39465 * 19 6 5 37 37 H 1.09002 * 109.70859 * 65.89128 * 20 19 6 38 38 H 1.08998 * 109.70791 * 186.52033 * 20 19 6 39 39 H 0.96704 * 113.99849 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5995 1.9887 0.8340 5 6 3.5678 1.4507 0.1258 6 7 4.0630 2.8240 -0.0311 7 6 5.4890 2.9116 0.3105 8 6 5.9015 4.3595 0.3769 9 8 5.0877 5.2326 0.1605 10 7 7.1750 4.6844 0.6758 11 6 7.5504 6.0016 0.7357 12 1 6.8258 6.7789 0.5431 13 6 8.8632 6.3365 1.0444 14 7 9.2228 7.5991 1.1023 15 14 10.1166 4.9920 1.3769 16 1 10.7766 4.6047 0.1043 17 1 11.1378 5.4925 2.3318 18 1 9.4319 3.8099 1.9591 19 6 3.8136 3.3363 -1.3843 20 6 2.3025 3.4564 -1.6129 21 6 1.6685 2.1160 -1.3049 22 7 0.8466 1.5705 -2.1198 23 8 0.5165 2.2207 -3.3337 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.9998 0.8176 -0.6493 30 1 3.8538 1.0709 1.1066 31 1 5.6605 2.4403 1.2783 32 1 6.0773 2.4008 -0.4518 33 1 7.8259 3.9862 0.8485 34 1 10.1394 7.8329 1.3175 35 1 4.2767 4.3170 -1.4928 36 1 4.2390 2.6503 -2.1169 37 1 1.8902 4.2187 -0.9518 38 1 2.1080 3.7251 -2.6511 39 1 -0.1112 1.7320 -3.8835 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000253246644.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:38 Heat of formation + Delta-G solvation = -46.460634 kcal Electronic energy + Delta-G solvation = -20947.183549 eV Core-core repulsion = 17697.613364 eV Total energy + Delta-G solvation = -3249.570186 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.91617 -39.76667 -37.58737 -36.20594 -35.65479 -33.90847 -33.66561 -31.11604 -30.49867 -28.04992 -25.75665 -24.72955 -23.27063 -22.22415 -21.19724 -20.16521 -19.98639 -18.03062 -17.72928 -17.14974 -16.77285 -16.35813 -15.88822 -15.75145 -15.38415 -15.16196 -15.08348 -14.94146 -14.38881 -14.21389 -13.93280 -13.77624 -13.61475 -13.05240 -12.85811 -12.63888 -12.57379 -12.37600 -12.06297 -12.04171 -11.94321 -11.88754 -11.60556 -11.44023 -10.69079 -10.40635 -10.26274 -10.16988 -9.22551 -8.38653 -5.99110 0.98466 1.32371 1.37853 1.46812 2.00071 2.10919 2.25587 2.59039 3.17715 3.19942 3.43543 3.83890 3.96636 4.03296 4.17645 4.25709 4.30880 4.39390 4.46376 4.52784 4.57323 4.70948 4.78157 4.84025 4.99578 5.02475 5.05936 5.08898 5.25375 5.42112 5.55593 5.59532 5.85088 5.97728 6.04845 6.18471 6.63100 6.83979 6.92141 7.43832 8.01649 8.79138 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.035999 B = 0.003966 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.609281 B = 7058.322029 C = 7523.969376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.103 4.103 3 C -0.024 4.024 4 H 0.106 0.894 5 C 0.065 3.935 6 N -0.537 5.537 7 C 0.056 3.944 8 C 0.450 3.550 9 O -0.605 6.605 10 N -0.592 5.592 11 C -0.326 4.326 12 H 0.054 0.946 13 C -0.017 4.017 14 N -0.937 5.937 15 Si 0.965 3.035 16 H -0.259 1.259 17 H -0.277 1.277 18 H -0.227 1.227 19 C 0.067 3.933 20 C -0.104 4.104 21 C 0.139 3.861 22 N -0.333 5.333 23 O -0.436 6.436 24 H 0.050 0.950 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.090 0.910 29 H 0.048 0.952 30 H 0.116 0.884 31 H 0.130 0.870 32 H 0.079 0.921 33 H 0.390 0.610 34 H 0.278 0.722 35 H 0.068 0.932 36 H 0.034 0.966 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.361 -21.582 -2.213 24.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.141 4.141 3 C -0.044 4.044 4 H 0.124 0.876 5 C -0.063 4.063 6 N -0.262 5.262 7 C -0.075 4.075 8 C 0.238 3.762 9 O -0.489 6.489 10 N -0.234 5.234 11 C -0.455 4.455 12 H 0.073 0.927 13 C -0.215 4.215 14 N -0.578 5.578 15 Si 0.785 3.215 16 H -0.184 1.184 17 H -0.202 1.202 18 H -0.150 1.150 19 C -0.062 4.062 20 C -0.144 4.144 21 C -0.054 4.054 22 N -0.077 5.077 23 O -0.344 6.344 24 H 0.069 0.931 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.109 0.891 29 H 0.066 0.934 30 H 0.134 0.866 31 H 0.148 0.852 32 H 0.097 0.903 33 H 0.225 0.775 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.052 0.948 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -12.220 -20.868 -2.006 24.266 hybrid contribution 1.262 0.443 -0.982 1.659 sum -10.959 -20.425 -2.988 23.371 Atomic orbital electron populations 1.21937 0.95473 1.02016 1.02236 1.21399 0.96504 0.93099 1.03061 1.20568 0.95741 0.97168 0.90949 0.87598 1.22339 0.93035 0.87184 1.03769 1.61246 1.15814 1.22600 1.26529 1.21829 0.89129 0.91946 1.04586 1.20943 0.81799 0.92279 0.81176 1.90527 1.52023 1.52358 1.53973 1.42032 1.10064 1.06638 1.64714 1.18991 0.96101 0.83401 1.47012 0.92747 1.26124 0.99348 0.99618 0.96419 1.69815 1.19895 1.19042 1.49054 0.85366 0.78038 0.78707 0.79417 1.18367 1.20224 1.15041 1.22010 0.95125 1.00613 0.88461 1.21161 0.95488 0.95636 1.02118 1.25660 0.90628 0.94085 0.95043 1.76046 1.15371 1.21884 0.94355 1.88458 1.67849 1.48663 1.29415 0.93066 0.92000 0.92038 0.92074 0.89119 0.93414 0.86584 0.85171 0.90347 0.77478 0.91245 0.91327 0.94774 0.90223 0.90613 0.73452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.52 9.67 71.98 0.70 -1.83 16 2 C -0.10 -1.54 5.09 30.59 0.16 -1.38 16 3 C -0.02 -0.47 2.63 -11.19 -0.03 -0.50 16 4 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 5 C 0.06 1.25 4.80 86.42 0.42 1.66 16 6 N -0.54 -15.39 4.32 -899.96 -3.89 -19.28 16 7 C 0.06 1.61 5.45 85.56 0.47 2.08 16 8 C 0.45 19.75 7.42 87.66 0.65 20.40 16 9 O -0.60 -32.73 13.90 -3.08 -0.04 -32.78 16 10 N -0.59 -27.32 5.09 -306.98 -1.56 -28.88 16 11 C -0.33 -18.93 10.16 84.04 0.85 -18.07 16 12 H 0.05 3.78 7.39 -2.91 -0.02 3.76 16 13 C -0.02 -0.93 5.50 84.93 0.47 -0.46 16 14 N -0.94 -56.56 13.96 21.66 0.30 -56.26 16 15 Si 0.96 38.27 27.74 68.60 1.90 40.17 16 16 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 17 H -0.28 -10.99 7.11 99.48 0.71 -10.28 16 18 H -0.23 -7.43 6.52 99.48 0.65 -6.78 16 19 C 0.07 2.13 5.13 86.42 0.44 2.58 16 20 C -0.10 -3.11 6.11 30.18 0.18 -2.93 16 21 C 0.14 3.46 6.33 47.02 0.30 3.76 16 22 N -0.33 -8.06 8.67 -40.07 -0.35 -8.40 16 23 O -0.44 -10.16 13.59 -38.79 -0.53 -10.69 16 24 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.06 1.20 5.54 -2.38 -0.01 1.19 16 26 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.06 0.98 8.09 -2.39 -0.02 0.96 16 28 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 29 H 0.05 0.85 8.10 -2.39 -0.02 0.83 16 30 H 0.12 1.62 7.94 -2.39 -0.02 1.60 16 31 H 0.13 2.86 7.93 -2.38 -0.02 2.84 16 32 H 0.08 1.88 8.13 -2.39 -0.02 1.86 16 33 H 0.39 14.70 5.76 -92.71 -0.53 14.16 16 34 H 0.28 15.35 8.31 -92.70 -0.77 14.58 16 35 H 0.07 2.78 5.71 -2.39 -0.01 2.77 16 36 H 0.03 1.00 8.10 -2.39 -0.02 0.98 16 37 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 38 H 0.08 2.33 6.98 -2.39 -0.02 2.31 16 39 H 0.41 5.46 9.28 -74.05 -0.69 4.77 16 Total: -1.00 -77.37 314.27 0.23 -77.15 By element: Atomic # 1 Polarization: 33.87 SS G_CDS: -0.21 Total: 33.66 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: 4.60 Total: 5.31 kcal Atomic # 7 Polarization: -107.32 SS G_CDS: -5.50 Total: -112.82 kcal Atomic # 8 Polarization: -42.90 SS G_CDS: -0.57 Total: -43.47 kcal Atomic # 14 Polarization: 38.27 SS G_CDS: 1.90 Total: 40.17 kcal Total: -77.37 0.23 -77.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253246644.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.687 kcal (2) G-P(sol) polarization free energy of solvation -77.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds