Wall clock time and date at job start Mon Mar 30 2020 05:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.54037 * 2 1 4 4 C 1.53035 * 109.50816 * 120.10396 * 2 1 3 5 5 N 1.46840 * 109.52994 * 179.11889 * 4 2 1 6 6 C 1.46895 * 111.00367 * 174.15975 * 5 4 2 7 7 C 1.46854 * 111.23238 * 298.28004 * 5 4 2 8 8 C 1.53037 * 109.52285 * 61.67711 * 7 5 4 9 9 C 1.53114 * 109.31211 * 300.88400 * 8 7 5 10 10 H 1.09003 * 109.52723 * 177.60069 * 9 8 7 11 11 N 1.46502 * 109.52306 * 297.72972 * 9 8 7 12 12 C 1.34778 * 120.00265 * 275.00042 * 11 9 8 13 13 O 1.21439 * 119.99865 * 359.97438 * 12 11 9 14 14 C 1.48831 * 119.99932 * 179.97438 * 12 11 9 15 15 O 1.21500 * 120.00427 * 0.02562 * 14 12 11 16 16 N 1.34776 * 119.99518 * 180.02562 * 14 12 11 17 17 C 1.36121 * 120.00017 * 180.02562 * 16 14 12 18 18 H 1.08006 * 119.99819 * 359.97438 * 17 16 14 19 19 C 1.39580 * 120.00315 * 180.02562 * 17 16 14 20 20 N 1.31018 * 120.00284 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00181 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46884 * 59.99940 * 21 19 17 23 23 H 1.48498 * 109.47244 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47428 * 300.00113 * 21 19 17 25 25 H 1.09002 * 109.47198 * 180.09391 * 1 2 3 26 26 H 1.09000 * 109.47120 * 300.09804 * 1 2 3 27 27 H 1.09001 * 109.47335 * 60.09607 * 1 2 3 28 28 H 1.09001 * 109.46056 * 299.13820 * 4 2 1 29 29 H 1.09003 * 109.46054 * 59.10985 * 4 2 1 30 30 H 1.08999 * 109.47502 * 59.99785 * 6 5 4 31 31 H 1.08996 * 109.47397 * 180.02562 * 6 5 4 32 32 H 1.09003 * 109.47015 * 300.00331 * 6 5 4 33 33 H 1.09000 * 109.42692 * 301.68444 * 7 5 4 34 34 H 1.09000 * 109.49358 * 181.71437 * 7 5 4 35 35 H 1.09002 * 109.50283 * 180.92217 * 8 7 5 36 36 H 1.09003 * 109.50113 * 60.84405 * 8 7 5 37 37 H 0.97010 * 119.99857 * 95.00214 * 11 9 8 38 38 H 0.96997 * 120.00228 * 359.97438 * 16 14 12 39 39 H 0.96990 * 120.00142 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0410 -0.7235 1.2479 5 7 3.5092 -0.7422 1.2378 6 6 4.0373 -1.3061 2.4872 7 6 4.0238 -1.4725 0.0722 8 6 3.5711 -0.7719 -1.2109 9 6 2.0412 -0.7237 -1.2488 10 1 1.7156 -0.1878 -2.1404 11 7 1.5090 -2.0883 -1.2762 12 6 1.3881 -2.7412 -2.4490 13 8 1.7199 -2.1981 -3.4833 14 6 0.8479 -4.1278 -2.4766 15 8 0.5154 -4.6710 -1.4419 16 7 0.7275 -4.7808 -3.6495 17 6 0.2330 -6.0487 -3.6749 18 1 -0.0626 -6.5316 -2.7551 19 6 0.1088 -6.7252 -4.8894 20 7 0.4677 -6.1397 -6.0052 21 14 -0.5692 -8.4655 -4.9242 22 1 -1.9461 -8.4715 -4.3677 23 1 -0.5999 -8.9569 -6.3252 24 1 0.2986 -9.3513 -4.1073 25 1 -0.3634 -1.0277 0.0017 26 1 -0.3633 0.5154 0.8891 27 1 -0.3634 0.5123 -0.8908 28 1 1.6906 -0.2024 2.1389 29 1 1.6649 -1.7466 1.2541 30 1 3.6756 -2.3274 2.6064 31 1 5.1267 -1.3077 2.4533 32 1 3.7012 -0.7011 3.3294 33 1 3.6388 -2.4922 0.0843 34 1 5.1129 -1.4950 0.1088 35 1 3.9394 -1.3233 -2.0760 36 1 3.9678 0.2433 -1.2305 37 1 1.2435 -2.5220 -0.4500 38 1 0.9926 -4.3470 -4.4756 39 1 0.3818 -6.6100 -6.8491 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000253285446.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:57 Heat of formation + Delta-G solvation = -98.842629 kcal Electronic energy + Delta-G solvation = -21328.879509 eV Core-core repulsion = 18077.037869 eV Total energy + Delta-G solvation = -3251.841640 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.70565 -40.24654 -38.85702 -36.53369 -35.96533 -33.80768 -33.39292 -32.38183 -28.15858 -27.89262 -27.16171 -24.98682 -23.64275 -22.72023 -21.42077 -20.40799 -20.13474 -18.81443 -17.63858 -16.87422 -16.71309 -16.60568 -16.20161 -16.15566 -15.76236 -15.43107 -15.16432 -14.71994 -14.54948 -14.25136 -13.70030 -13.68006 -13.48312 -13.22690 -12.97882 -12.84009 -12.60885 -12.45060 -12.35291 -12.21861 -12.12973 -11.90994 -11.67730 -11.65962 -11.29230 -10.29801 -10.25575 -10.16258 -9.33210 -8.67407 -6.12768 0.59792 1.39743 1.47994 1.52681 1.82672 2.28372 2.36480 2.93499 3.13883 3.26325 3.57280 3.77751 3.90652 4.01411 4.07891 4.29971 4.39180 4.44233 4.53830 4.61344 4.65953 4.75787 4.82783 4.88562 4.95032 5.02894 5.04733 5.13546 5.17498 5.23013 5.33277 5.46849 5.66437 6.03181 6.08528 6.15589 6.36948 6.79561 7.00744 7.26437 7.78189 8.48187 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.030666 B = 0.004292 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.836765 B = 6522.857199 C = 6660.973840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.083 4.083 3 H 0.113 0.887 4 C 0.056 3.944 5 N -0.541 5.541 6 C 0.023 3.977 7 C 0.057 3.943 8 C -0.123 4.123 9 C 0.140 3.860 10 H 0.081 0.919 11 N -0.685 5.685 12 C 0.520 3.480 13 O -0.564 6.564 14 C 0.387 3.613 15 O -0.620 6.620 16 N -0.510 5.510 17 C -0.347 4.347 18 H 0.098 0.902 19 C -0.003 4.003 20 N -0.895 5.895 21 Si 1.010 2.990 22 H -0.264 1.264 23 H -0.266 1.266 24 H -0.264 1.264 25 H 0.039 0.961 26 H 0.082 0.918 27 H 0.057 0.943 28 H 0.100 0.900 29 H 0.020 0.980 30 H 0.017 0.983 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.014 0.986 34 H 0.086 0.914 35 H 0.052 0.948 36 H 0.101 0.899 37 H 0.408 0.592 38 H 0.401 0.599 39 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.350 11.558 12.615 17.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.102 4.102 3 H 0.131 0.869 4 C -0.072 4.072 5 N -0.265 5.265 6 C -0.125 4.125 7 C -0.071 4.071 8 C -0.161 4.161 9 C 0.036 3.964 10 H 0.099 0.901 11 N -0.338 5.338 12 C 0.303 3.697 13 O -0.443 6.443 14 C 0.172 3.828 15 O -0.510 6.510 16 N -0.144 5.144 17 C -0.477 4.477 18 H 0.116 0.884 19 C -0.208 4.208 20 N -0.533 5.533 21 Si 0.831 3.169 22 H -0.188 1.188 23 H -0.190 1.190 24 H -0.189 1.189 25 H 0.058 0.942 26 H 0.101 0.899 27 H 0.076 0.924 28 H 0.119 0.881 29 H 0.039 0.961 30 H 0.036 0.964 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.032 0.968 34 H 0.104 0.896 35 H 0.070 0.930 36 H 0.119 0.881 37 H 0.246 0.754 38 H 0.235 0.765 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.558 12.059 12.310 17.825 hybrid contribution -0.493 -1.775 -0.428 1.891 sum 4.065 10.283 11.883 16.232 Atomic orbital electron populations 1.21795 0.93929 1.01672 1.03071 1.21419 0.96115 1.00828 0.91804 0.86873 1.22238 0.87229 0.98644 0.99138 1.62002 1.08062 1.53745 1.02705 1.22430 1.01071 0.97517 0.91492 1.22038 1.00432 0.94301 0.90346 1.21925 0.94635 1.02833 0.96735 1.21334 0.93859 0.81000 1.00164 0.90124 1.45776 1.63534 1.16168 1.08323 1.20026 0.78440 0.86740 0.84485 1.90672 1.51038 1.69064 1.33546 1.19689 0.89794 0.88464 0.84852 1.90536 1.57868 1.69863 1.32702 1.41652 1.50726 1.13906 1.08069 1.19936 1.41338 0.90608 0.95795 0.88429 1.26536 0.95887 1.04953 0.93395 1.69542 1.43683 1.40606 0.99448 0.84757 0.78974 0.75009 0.78201 1.18841 1.19005 1.18892 0.94158 0.89944 0.92368 0.88141 0.96140 0.96396 0.90545 0.89671 0.96771 0.89570 0.92965 0.88081 0.75442 0.76485 0.90049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 9.01 71.98 0.65 -2.24 16 2 C -0.08 -1.64 2.67 -10.74 -0.03 -1.67 16 3 H 0.11 1.87 8.14 -2.38 -0.02 1.85 16 4 C 0.06 1.08 4.59 86.33 0.40 1.48 16 5 N -0.54 -10.84 4.91 -922.61 -4.53 -15.37 16 6 C 0.02 0.38 9.59 127.69 1.22 1.60 16 7 C 0.06 1.35 5.32 86.32 0.46 1.81 16 8 C -0.12 -3.09 5.76 30.64 0.18 -2.91 16 9 C 0.14 3.78 2.28 45.07 0.10 3.89 16 10 H 0.08 2.39 7.58 -2.39 -0.02 2.37 16 11 N -0.69 -23.51 3.63 -444.07 -1.61 -25.12 16 12 C 0.52 23.00 7.83 87.08 0.68 23.68 16 13 O -0.56 -26.71 16.13 -3.52 -0.06 -26.77 16 14 C 0.39 20.18 7.82 87.08 0.68 20.86 16 15 O -0.62 -34.22 16.03 -3.72 -0.06 -34.28 16 16 N -0.51 -28.36 5.25 -308.87 -1.62 -29.98 16 17 C -0.35 -19.71 9.67 84.35 0.82 -18.89 16 18 H 0.10 5.69 7.15 -2.91 -0.02 5.66 16 19 C 0.00 -0.17 5.51 85.14 0.47 0.30 16 20 N -0.90 -48.38 13.03 21.76 0.28 -48.10 16 21 Si 1.01 40.91 29.56 68.60 2.03 42.93 16 22 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 23 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 24 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 25 H 0.04 0.96 7.30 -2.39 -0.02 0.94 16 26 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.10 1.54 8.12 -2.39 -0.02 1.52 16 29 H 0.02 0.47 6.64 -2.39 -0.02 0.46 16 30 H 0.02 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.08 1.13 8.09 -2.39 -0.02 1.12 16 32 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.01 0.40 7.69 -2.39 -0.02 0.38 16 34 H 0.09 1.82 8.09 -2.39 -0.02 1.80 16 35 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.41 13.83 6.11 -92.70 -0.57 13.26 16 38 H 0.40 22.52 7.35 -92.71 -0.68 21.84 16 39 H 0.29 14.32 8.30 -92.72 -0.77 13.55 16 Total: -1.00 -65.32 319.31 -0.12 -65.44 By element: Atomic # 1 Polarization: 43.52 SS G_CDS: -0.18 Total: 43.34 kcal Atomic # 6 Polarization: 22.27 SS G_CDS: 5.63 Total: 27.90 kcal Atomic # 7 Polarization: -111.09 SS G_CDS: -7.48 Total: -118.56 kcal Atomic # 8 Polarization: -60.93 SS G_CDS: -0.12 Total: -61.05 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.93 kcal Total: -65.32 -0.12 -65.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253285446.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.405 kcal (2) G-P(sol) polarization free energy of solvation -65.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds