Wall clock time and date at job start Mon Mar 30 2020 05:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.49670 * 2 1 4 4 C 1.53037 * 109.50148 * 239.88549 * 2 1 3 5 5 N 1.46851 * 109.51851 * 180.87598 * 4 2 1 6 6 C 1.46901 * 110.99811 * 185.83502 * 5 4 2 7 7 C 1.46851 * 111.19715 * 61.74136 * 5 4 2 8 8 C 1.53036 * 109.52435 * 298.25660 * 7 5 4 9 9 C 1.53116 * 109.50350 * 120.07806 * 2 1 3 10 10 H 1.08994 * 109.52308 * 57.69210 * 9 2 1 11 11 N 1.46499 * 109.52447 * 297.50242 * 9 2 1 12 12 C 1.34773 * 119.99886 * 155.31632 * 11 9 2 13 13 O 1.21438 * 120.00463 * 0.02562 * 12 11 9 14 14 C 1.48837 * 119.99982 * 179.97438 * 12 11 9 15 15 O 1.21505 * 119.99887 * 0.02562 * 14 12 11 16 16 N 1.34769 * 120.00311 * 180.02562 * 14 12 11 17 17 C 1.36120 * 120.00263 * 180.02562 * 16 14 12 18 18 H 1.07995 * 120.00148 * 359.97438 * 17 16 14 19 19 C 1.39586 * 119.99801 * 180.02562 * 17 16 14 20 20 N 1.31012 * 120.00676 * 359.97438 * 19 17 16 21 21 Si 1.86809 * 119.99849 * 179.97438 * 19 17 16 22 22 H 1.48491 * 109.47059 * 89.99617 * 21 19 17 23 23 H 1.48494 * 109.47067 * 210.00109 * 21 19 17 24 24 H 1.48501 * 109.46850 * 329.99522 * 21 19 17 25 25 H 1.09004 * 109.47229 * 299.92168 * 1 2 3 26 26 H 1.08996 * 109.47119 * 59.91800 * 1 2 3 27 27 H 1.09000 * 109.46765 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.46378 * 60.86569 * 4 2 1 29 29 H 1.08994 * 109.46214 * 300.88993 * 4 2 1 30 30 H 1.09002 * 109.47401 * 291.83856 * 6 5 4 31 31 H 1.09001 * 109.46874 * 171.83869 * 6 5 4 32 32 H 1.09004 * 109.46970 * 51.84002 * 6 5 4 33 33 H 1.09008 * 109.46277 * 58.27072 * 7 5 4 34 34 H 1.09004 * 109.46518 * 178.23714 * 7 5 4 35 35 H 1.09000 * 109.50296 * 179.11929 * 8 7 5 36 36 H 1.08997 * 109.50225 * 299.23606 * 8 7 5 37 37 H 0.97005 * 119.99937 * 335.31814 * 11 9 2 38 38 H 0.97005 * 119.99848 * 0.02562 * 16 14 12 39 39 H 0.96994 * 120.00338 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0409 -0.7238 -1.2479 5 7 3.5093 -0.7423 -1.2377 6 6 4.0373 -1.3065 -2.4870 7 6 4.0230 -1.4728 -0.0719 8 6 3.5712 -0.7714 1.2110 9 6 2.0412 -0.7234 1.2490 10 1 1.6453 -1.7386 1.2695 11 7 1.6037 -0.0016 2.4463 12 6 1.4829 -0.6535 3.6197 13 8 1.7372 -1.8392 3.6845 14 6 1.0389 0.0799 4.8363 15 8 0.7849 1.2663 4.7716 16 7 0.9185 -0.5719 6.0097 17 6 0.5120 0.0988 7.1223 18 1 0.2862 1.1533 7.0648 19 6 0.3879 -0.5763 8.3378 20 7 0.6622 -1.8555 8.4077 21 14 -0.1694 0.3442 9.8648 22 1 -1.6497 0.2858 9.9653 23 1 0.4337 -0.2826 11.0683 24 1 0.2651 1.7614 9.7745 25 1 -0.3634 0.5126 0.8907 26 1 -0.3633 0.5151 -0.8892 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6905 -0.2029 -2.1388 29 1 1.6648 -1.7468 -1.2539 30 1 3.7975 -2.3687 -2.5360 31 1 5.1191 -1.1766 -2.5157 32 1 3.5870 -0.7929 -3.3365 33 1 3.6375 -2.4924 -0.0834 34 1 5.1121 -1.4961 -0.1089 35 1 3.9395 -1.3227 2.0762 36 1 3.9678 0.2437 1.2297 37 1 1.4009 0.9457 2.3947 38 1 1.1217 -1.5190 6.0615 39 1 0.5757 -2.3246 9.2523 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253285447.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:00 Heat of formation + Delta-G solvation = -78.861645 kcal Electronic energy + Delta-G solvation = -20932.994325 eV Core-core repulsion = 17682.019125 eV Total energy + Delta-G solvation = -3250.975199 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.07070 -38.79971 -37.10954 -35.24145 -34.20802 -32.64820 -31.49577 -31.16517 -27.09811 -26.58748 -25.51645 -23.52044 -22.09610 -21.60360 -20.11830 -19.21102 -18.29377 -17.05141 -16.11000 -15.63432 -15.43277 -15.07394 -14.86421 -14.63138 -14.32543 -14.02622 -13.81540 -13.28211 -12.91529 -12.80573 -12.61529 -12.53158 -12.36672 -12.03137 -11.76742 -11.59629 -11.21064 -11.18788 -10.95205 -10.83829 -10.52701 -10.41876 -10.41189 -10.29214 -9.71153 -8.70164 -8.52923 -8.24563 -8.21601 -6.66305 -3.98658 2.46656 3.15446 3.16345 3.21748 3.42687 3.72991 4.06835 4.28781 4.53359 4.74652 4.81359 4.97422 5.08035 5.15086 5.20381 5.24106 5.27702 5.34544 5.49128 5.54424 5.58271 5.62590 5.65741 5.81126 5.87248 5.98533 6.05349 6.14257 6.19802 6.35279 6.83537 6.87414 6.88764 7.31718 7.71303 7.90950 8.34445 8.64980 8.97320 9.33006 9.86224 10.48608 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.043891 B = 0.003725 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.784254 B = 7514.833291 C = 7810.796364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.095 4.095 3 H 0.086 0.914 4 C 0.065 3.935 5 N -0.546 5.546 6 C 0.025 3.975 7 C 0.059 3.941 8 C -0.129 4.129 9 C 0.150 3.850 10 H 0.084 0.916 11 N -0.708 5.708 12 C 0.515 3.485 13 O -0.548 6.548 14 C 0.394 3.606 15 O -0.598 6.598 16 N -0.500 5.500 17 C -0.306 4.306 18 H 0.112 0.888 19 C 0.031 3.969 20 N -0.869 5.869 21 Si 0.939 3.061 22 H -0.273 1.273 23 H -0.280 1.280 24 H -0.265 1.265 25 H 0.065 0.935 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.078 0.922 29 H 0.036 0.964 30 H 0.024 0.976 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.036 0.964 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.409 0.591 38 H 0.404 0.596 39 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.747 0.245 -17.440 17.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.115 4.115 3 H 0.104 0.896 4 C -0.064 4.064 5 N -0.270 5.270 6 C -0.123 4.123 7 C -0.069 4.069 8 C -0.168 4.168 9 C 0.045 3.955 10 H 0.102 0.898 11 N -0.361 5.361 12 C 0.299 3.701 13 O -0.425 6.425 14 C 0.178 3.822 15 O -0.486 6.486 16 N -0.134 5.134 17 C -0.437 4.437 18 H 0.130 0.870 19 C -0.176 4.176 20 N -0.508 5.508 21 Si 0.764 3.236 22 H -0.199 1.199 23 H -0.205 1.205 24 H -0.189 1.189 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.096 0.904 29 H 0.054 0.946 30 H 0.043 0.957 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.054 0.946 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.245 0.755 38 H 0.240 0.760 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.930 0.477 -17.235 17.684 hybrid contribution -0.450 -0.675 0.673 1.054 sum 3.480 -0.198 -16.562 16.925 Atomic orbital electron populations 1.21812 0.94194 1.02235 1.02358 1.21434 0.95998 1.00743 0.93306 0.89609 1.22107 0.87084 0.99097 0.98083 1.61948 1.08137 1.54323 1.02579 1.22343 1.00827 0.97321 0.91790 1.22070 0.99996 0.95045 0.89787 1.22016 0.95758 1.02090 0.96956 1.20980 0.93869 0.96865 0.83771 0.89840 1.45703 1.68639 1.13957 1.07772 1.20681 0.77341 0.86992 0.85068 1.90678 1.50223 1.15778 1.85786 1.18995 0.90747 0.88002 0.84434 1.90580 1.57976 1.15025 1.85036 1.41563 1.52583 1.12667 1.06578 1.19880 1.41794 0.96445 0.85535 0.86992 1.25582 0.96407 0.95673 0.99931 1.69481 1.44404 1.08510 1.28360 0.85727 0.78922 0.79637 0.79315 1.19911 1.20529 1.18889 0.91570 0.92426 0.92649 0.90356 0.94609 0.95692 0.91329 0.91463 0.94604 0.90486 0.90549 0.90718 0.75486 0.76023 0.90940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.06 37.16 0.34 -1.26 16 2 C -0.10 -1.07 2.44 -90.54 -0.22 -1.29 16 3 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 4 C 0.06 0.64 4.75 -3.83 -0.02 0.62 16 5 N -0.55 -5.64 4.91 -242.95 -1.19 -6.83 16 6 C 0.03 0.21 9.62 60.07 0.58 0.78 16 7 C 0.06 0.66 5.46 -3.83 -0.02 0.64 16 8 C -0.13 -1.72 5.67 -26.65 -0.15 -1.87 16 9 C 0.15 2.12 1.94 -67.81 -0.13 1.99 16 10 H 0.08 1.32 7.59 -51.93 -0.39 0.92 16 11 N -0.71 -12.08 4.45 -54.32 -0.24 -12.32 16 12 C 0.51 11.14 7.83 -11.87 -0.09 11.05 16 13 O -0.55 -12.75 16.14 5.42 0.09 -12.67 16 14 C 0.39 9.95 7.82 -11.88 -0.09 9.85 16 15 O -0.60 -16.02 16.03 5.36 0.09 -15.94 16 16 N -0.50 -13.42 5.25 -11.59 -0.06 -13.48 16 17 C -0.31 -8.46 9.67 -15.15 -0.15 -8.61 16 18 H 0.11 3.16 7.15 -52.49 -0.38 2.79 16 19 C 0.03 0.80 5.51 -17.40 -0.10 0.71 16 20 N -0.87 -23.38 13.03 55.53 0.72 -22.65 16 21 Si 0.94 20.14 29.56 -169.99 -5.02 15.11 16 22 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 23 H -0.28 -5.86 7.11 56.52 0.40 -5.45 16 24 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 25 H 0.07 0.81 7.62 -51.93 -0.40 0.41 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.08 0.67 8.04 -51.93 -0.42 0.25 16 29 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.02 0.20 8.14 -51.93 -0.42 -0.23 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.47 8.02 -51.93 -0.42 0.05 16 33 H 0.04 0.41 8.14 -51.92 -0.42 -0.02 16 34 H 0.08 0.77 8.12 -51.93 -0.42 0.35 16 35 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.41 6.68 7.98 -40.82 -0.33 6.36 16 38 H 0.40 10.95 7.35 -40.82 -0.30 10.65 16 39 H 0.28 6.98 8.30 -40.82 -0.34 6.64 16 LS Contribution 323.89 15.07 4.88 4.88 Total: -1.00 -30.24 323.89 -6.78 -37.02 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: -5.99 Total: 14.26 kcal Atomic # 6 Polarization: 12.67 SS G_CDS: -0.06 Total: 12.62 kcal Atomic # 7 Polarization: -54.52 SS G_CDS: -0.77 Total: -55.29 kcal Atomic # 8 Polarization: -28.78 SS G_CDS: 0.17 Total: -28.61 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.24 -6.78 -37.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253285447.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.840 kcal (2) G-P(sol) polarization free energy of solvation -30.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds