Wall clock time and date at job start Mon Mar 30 2020 05:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.49670 * 2 1 4 4 C 1.53037 * 109.50148 * 239.88549 * 2 1 3 5 5 N 1.46851 * 109.51851 * 180.87598 * 4 2 1 6 6 C 1.46901 * 110.99811 * 185.83502 * 5 4 2 7 7 C 1.46851 * 111.19715 * 61.74136 * 5 4 2 8 8 C 1.53036 * 109.52435 * 298.25660 * 7 5 4 9 9 C 1.53116 * 109.50350 * 120.07806 * 2 1 3 10 10 H 1.08994 * 109.52308 * 57.69210 * 9 2 1 11 11 N 1.46499 * 109.52447 * 297.50242 * 9 2 1 12 12 C 1.34773 * 119.99886 * 155.31632 * 11 9 2 13 13 O 1.21438 * 120.00463 * 0.02562 * 12 11 9 14 14 C 1.48837 * 119.99982 * 179.97438 * 12 11 9 15 15 O 1.21505 * 119.99887 * 0.02562 * 14 12 11 16 16 N 1.34769 * 120.00311 * 180.02562 * 14 12 11 17 17 C 1.36120 * 120.00263 * 180.02562 * 16 14 12 18 18 H 1.07995 * 120.00148 * 359.97438 * 17 16 14 19 19 C 1.39586 * 119.99801 * 180.02562 * 17 16 14 20 20 N 1.31012 * 120.00676 * 359.97438 * 19 17 16 21 21 Si 1.86809 * 119.99849 * 179.97438 * 19 17 16 22 22 H 1.48491 * 109.47059 * 89.99617 * 21 19 17 23 23 H 1.48494 * 109.47067 * 210.00109 * 21 19 17 24 24 H 1.48501 * 109.46850 * 329.99522 * 21 19 17 25 25 H 1.09004 * 109.47229 * 299.92168 * 1 2 3 26 26 H 1.08996 * 109.47119 * 59.91800 * 1 2 3 27 27 H 1.09000 * 109.46765 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.46378 * 60.86569 * 4 2 1 29 29 H 1.08994 * 109.46214 * 300.88993 * 4 2 1 30 30 H 1.09002 * 109.47401 * 291.83856 * 6 5 4 31 31 H 1.09001 * 109.46874 * 171.83869 * 6 5 4 32 32 H 1.09004 * 109.46970 * 51.84002 * 6 5 4 33 33 H 1.09008 * 109.46277 * 58.27072 * 7 5 4 34 34 H 1.09004 * 109.46518 * 178.23714 * 7 5 4 35 35 H 1.09000 * 109.50296 * 179.11929 * 8 7 5 36 36 H 1.08997 * 109.50225 * 299.23606 * 8 7 5 37 37 H 0.97005 * 119.99937 * 335.31814 * 11 9 2 38 38 H 0.97005 * 119.99848 * 0.02562 * 16 14 12 39 39 H 0.96994 * 120.00338 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0409 -0.7238 -1.2479 5 7 3.5093 -0.7423 -1.2377 6 6 4.0373 -1.3065 -2.4870 7 6 4.0230 -1.4728 -0.0719 8 6 3.5712 -0.7714 1.2110 9 6 2.0412 -0.7234 1.2490 10 1 1.6453 -1.7386 1.2695 11 7 1.6037 -0.0016 2.4463 12 6 1.4829 -0.6535 3.6197 13 8 1.7372 -1.8392 3.6845 14 6 1.0389 0.0799 4.8363 15 8 0.7849 1.2663 4.7716 16 7 0.9185 -0.5719 6.0097 17 6 0.5120 0.0988 7.1223 18 1 0.2862 1.1533 7.0648 19 6 0.3879 -0.5763 8.3378 20 7 0.6622 -1.8555 8.4077 21 14 -0.1694 0.3442 9.8648 22 1 -1.6497 0.2858 9.9653 23 1 0.4337 -0.2826 11.0683 24 1 0.2651 1.7614 9.7745 25 1 -0.3634 0.5126 0.8907 26 1 -0.3633 0.5151 -0.8892 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6905 -0.2029 -2.1388 29 1 1.6648 -1.7468 -1.2539 30 1 3.7975 -2.3687 -2.5360 31 1 5.1191 -1.1766 -2.5157 32 1 3.5870 -0.7929 -3.3365 33 1 3.6375 -2.4924 -0.0834 34 1 5.1121 -1.4961 -0.1089 35 1 3.9395 -1.3227 2.0762 36 1 3.9678 0.2437 1.2297 37 1 1.4009 0.9457 2.3947 38 1 1.1217 -1.5190 6.0615 39 1 0.5757 -2.3246 9.2523 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000253285447.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:00 Heat of formation + Delta-G solvation = -102.137095 kcal Electronic energy + Delta-G solvation = -20934.003624 eV Core-core repulsion = 17682.019125 eV Total energy + Delta-G solvation = -3251.984498 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.56079 -40.20552 -38.91435 -36.64931 -36.04638 -33.83600 -33.39731 -32.41353 -28.19836 -27.84280 -27.02046 -24.91078 -23.41958 -22.56792 -21.40544 -20.81627 -20.27491 -18.76616 -17.72921 -17.08043 -16.61192 -16.55295 -16.24816 -15.90053 -15.73254 -15.47614 -15.17348 -14.67985 -14.46613 -14.29407 -13.71543 -13.67483 -13.37930 -13.31582 -12.97451 -12.83072 -12.58952 -12.48459 -12.31521 -12.15288 -12.10647 -11.88192 -11.76901 -11.66888 -11.44564 -10.28300 -10.23785 -10.14466 -9.31387 -8.66404 -6.11465 0.60319 1.40795 1.46965 1.55588 1.81478 2.29090 2.37311 2.94367 3.14972 3.25907 3.56121 3.77412 3.91965 4.01761 4.07970 4.29891 4.35617 4.44183 4.54180 4.54889 4.67393 4.75440 4.79538 4.87956 4.91674 5.02965 5.06563 5.11452 5.21880 5.24774 5.31554 5.43881 5.67906 6.05537 6.11640 6.17560 6.39536 6.81367 7.02326 7.27742 7.79534 8.49461 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.043891 B = 0.003725 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.784254 B = 7514.833291 C = 7810.796364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.087 4.087 3 H 0.091 0.909 4 C 0.067 3.933 5 N -0.554 5.554 6 C 0.025 3.975 7 C 0.065 3.935 8 C -0.125 4.125 9 C 0.146 3.854 10 H 0.068 0.932 11 N -0.686 5.686 12 C 0.521 3.479 13 O -0.567 6.567 14 C 0.389 3.611 15 O -0.616 6.616 16 N -0.511 5.511 17 C -0.346 4.346 18 H 0.099 0.901 19 C -0.005 4.005 20 N -0.896 5.896 21 Si 1.010 2.990 22 H -0.264 1.264 23 H -0.267 1.267 24 H -0.263 1.263 25 H 0.047 0.953 26 H 0.082 0.918 27 H 0.050 0.950 28 H 0.101 0.899 29 H 0.034 0.966 30 H 0.027 0.973 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.032 0.968 34 H 0.090 0.910 35 H 0.052 0.948 36 H 0.076 0.924 37 H 0.415 0.585 38 H 0.400 0.600 39 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.813 0.790 -18.753 19.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.106 4.106 3 H 0.109 0.891 4 C -0.061 4.061 5 N -0.278 5.278 6 C -0.123 4.123 7 C -0.063 4.063 8 C -0.164 4.164 9 C 0.043 3.957 10 H 0.086 0.914 11 N -0.338 5.338 12 C 0.304 3.696 13 O -0.446 6.446 14 C 0.174 3.826 15 O -0.506 6.506 16 N -0.145 5.145 17 C -0.476 4.476 18 H 0.117 0.883 19 C -0.209 4.209 20 N -0.534 5.534 21 Si 0.831 3.169 22 H -0.189 1.189 23 H -0.191 1.191 24 H -0.188 1.188 25 H 0.066 0.934 26 H 0.101 0.899 27 H 0.070 0.930 28 H 0.119 0.881 29 H 0.053 0.947 30 H 0.045 0.955 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.050 0.950 34 H 0.108 0.892 35 H 0.071 0.929 36 H 0.095 0.905 37 H 0.252 0.748 38 H 0.235 0.765 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.005 1.026 -18.598 19.052 hybrid contribution -0.441 -0.847 0.966 1.358 sum 3.564 0.178 -17.632 17.989 Atomic orbital electron populations 1.21798 0.93767 1.02105 1.02718 1.21404 0.96284 1.00703 0.92226 0.89077 1.22125 0.86991 0.99102 0.97884 1.61957 1.08323 1.54456 1.03075 1.22412 1.01355 0.97545 0.90965 1.21982 1.00757 0.94496 0.89082 1.21943 0.94748 1.02141 0.97597 1.21261 0.94692 0.96190 0.83599 0.91397 1.45680 1.66631 1.14157 1.07289 1.20060 0.77741 0.86535 0.85276 1.90671 1.51527 1.16340 1.86083 1.19649 0.89723 0.88007 0.85217 1.90545 1.58511 1.15901 1.85632 1.41655 1.53202 1.12439 1.07187 1.19985 1.44439 0.96311 0.86821 0.88317 1.26548 0.95440 0.96468 1.02452 1.69548 1.44399 1.09773 1.29686 0.84695 0.78786 0.78208 0.75232 1.18922 1.19115 1.18750 0.93394 0.89876 0.93050 0.88080 0.94734 0.95463 0.90623 0.90002 0.94986 0.89211 0.92886 0.90520 0.74833 0.76531 0.90102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 9.06 71.98 0.65 -2.25 16 2 C -0.09 -1.79 2.44 -10.74 -0.03 -1.82 16 3 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 4 C 0.07 1.15 4.75 86.32 0.41 1.56 16 5 N -0.55 -10.02 4.91 -922.56 -4.53 -14.55 16 6 C 0.02 0.33 9.62 127.69 1.23 1.56 16 7 C 0.07 1.35 5.46 86.32 0.47 1.82 16 8 C -0.13 -3.27 5.67 30.65 0.17 -3.10 16 9 C 0.15 4.07 1.94 45.07 0.09 4.16 16 10 H 0.07 2.15 7.59 -2.39 -0.02 2.13 16 11 N -0.69 -23.51 4.45 -444.09 -1.97 -25.49 16 12 C 0.52 23.06 7.83 87.08 0.68 23.74 16 13 O -0.57 -27.10 16.14 -3.52 -0.06 -27.16 16 14 C 0.39 20.22 7.82 87.08 0.68 20.90 16 15 O -0.62 -33.78 16.03 -3.73 -0.06 -33.84 16 16 N -0.51 -28.40 5.25 -308.88 -1.62 -30.02 16 17 C -0.35 -19.64 9.67 84.35 0.82 -18.82 16 18 H 0.10 5.75 7.15 -2.91 -0.02 5.73 16 19 C 0.00 -0.26 5.51 85.14 0.47 0.21 16 20 N -0.90 -48.55 13.03 21.76 0.28 -48.27 16 21 Si 1.01 40.99 29.56 68.60 2.03 43.02 16 22 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 23 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 24 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 25 H 0.05 1.13 7.62 -2.39 -0.02 1.11 16 26 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.10 1.33 8.04 -2.39 -0.02 1.31 16 29 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.03 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.08 0.86 8.02 -2.38 -0.02 0.84 16 33 H 0.03 0.69 8.14 -2.38 -0.02 0.67 16 34 H 0.09 1.64 8.12 -2.39 -0.02 1.62 16 35 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.41 13.46 7.98 -92.70 -0.74 12.72 16 38 H 0.40 22.52 7.35 -92.70 -0.68 21.84 16 39 H 0.29 14.30 8.30 -92.71 -0.77 13.53 16 Total: -1.00 -65.70 323.89 -0.65 -66.34 By element: Atomic # 1 Polarization: 42.36 SS G_CDS: -0.36 Total: 42.00 kcal Atomic # 6 Polarization: 22.32 SS G_CDS: 5.64 Total: 27.97 kcal Atomic # 7 Polarization: -110.49 SS G_CDS: -7.84 Total: -118.34 kcal Atomic # 8 Polarization: -60.88 SS G_CDS: -0.12 Total: -60.99 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 2.03 Total: 43.02 kcal Total: -65.70 -0.65 -66.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253285447.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.796 kcal (2) G-P(sol) polarization free energy of solvation -65.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds