Wall clock time and date at job start Mon Mar 30 2020 05:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.73878 * 2 1 4 4 C 1.53293 * 109.71249 * 239.38423 * 2 1 3 5 5 N 1.46828 * 109.40125 * 186.52000 * 4 2 1 6 6 C 1.46904 * 110.99979 * 189.75575 * 5 4 2 7 7 C 1.50695 * 109.46798 * 170.00314 * 6 5 4 8 8 O 1.21274 * 120.00413 * 0.27179 * 7 6 5 9 9 N 1.34784 * 119.99635 * 180.02562 * 7 6 5 10 10 C 1.46499 * 119.99971 * 179.97438 * 9 7 6 11 11 C 1.50697 * 109.47276 * 180.02562 * 10 9 7 12 12 H 1.08002 * 119.99866 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99925 * 180.02562 * 11 10 9 14 14 N 1.31512 * 120.00389 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99821 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46843 * 60.00309 * 15 13 11 17 17 H 1.48498 * 109.47022 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47284 * 300.00154 * 15 13 11 19 19 C 1.46829 * 111.56342 * 65.39156 * 5 4 2 20 20 C 1.53295 * 109.39964 * 294.61390 * 19 5 4 21 21 C 1.51432 * 108.24405 * 53.79060 * 20 19 5 22 22 N 1.27964 * 121.10836 * 130.95241 * 21 20 19 23 23 O 1.41597 * 119.99873 * 0.02562 * 22 21 20 24 24 H 1.08998 * 109.47480 * 180.61043 * 1 2 3 25 25 H 1.08998 * 109.47699 * 300.61285 * 1 2 3 26 26 H 1.09000 * 109.47054 * 60.60694 * 1 2 3 27 27 H 1.09007 * 109.47934 * 66.54972 * 4 2 1 28 28 H 1.09001 * 109.48392 * 306.50638 * 4 2 1 29 29 H 1.09005 * 109.47078 * 50.00195 * 6 5 4 30 30 H 1.09002 * 109.47005 * 290.00411 * 6 5 4 31 31 H 0.96999 * 120.00044 * 0.02562 * 9 7 6 32 32 H 1.09004 * 109.47024 * 300.00310 * 10 9 7 33 33 H 1.09005 * 109.47136 * 59.99926 * 10 9 7 34 34 H 0.96998 * 120.00132 * 179.97438 * 14 13 11 35 35 H 1.08998 * 109.48251 * 54.59350 * 19 5 4 36 36 H 1.09000 * 109.48271 * 174.63083 * 19 5 4 37 37 H 1.09009 * 109.70515 * 294.10402 * 20 19 5 38 38 H 1.08997 * 109.74607 * 173.50073 * 20 19 5 39 39 H 0.96706 * 113.99925 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8981 1.0260 0.0000 4 6 2.0470 -0.7349 -1.2419 5 7 3.5068 -0.8677 -1.1576 6 6 4.0652 -1.3561 -2.4256 7 6 5.5677 -1.2476 -2.3876 8 8 6.1195 -0.8115 -1.3996 9 7 6.2987 -1.6399 -3.4499 10 6 7.7594 -1.5339 -3.4133 11 6 8.3321 -2.0338 -4.7145 12 1 7.6739 -2.3948 -5.4909 13 6 9.6965 -2.0313 -4.9133 14 7 10.4981 -1.5931 -3.9673 15 14 10.4064 -2.6516 -6.5259 16 1 9.8791 -1.8323 -7.6466 17 1 11.8871 -2.5452 -6.4884 18 1 10.0175 -4.0710 -6.7246 19 6 3.9064 -1.7314 -0.0394 20 6 3.5155 -1.0642 1.2842 21 6 2.0406 -0.7258 1.2271 22 7 1.2520 -1.0429 2.1837 23 8 1.7548 -1.7214 3.3203 24 1 -0.3634 -1.0276 0.0109 25 1 -0.3634 0.5233 0.8844 26 1 -0.3633 0.5044 -0.8954 27 1 1.7846 -0.1681 -2.1353 28 1 1.5941 -1.7251 -1.2933 29 1 3.6781 -0.7551 -3.2485 30 1 3.7796 -2.3980 -2.5710 31 1 5.8576 -1.9917 -4.2389 32 1 8.0446 -0.4919 -3.2677 33 1 8.1468 -2.1350 -2.5906 34 1 11.4580 -1.5917 -4.1071 35 1 3.4013 -2.6935 -0.1246 36 1 4.9854 -1.8836 -0.0652 37 1 4.0969 -0.1524 1.4219 38 1 3.7039 -1.7486 2.1113 39 1 1.0848 -1.9179 3.9894 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253291688.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:49 Heat of formation + Delta-G solvation = -30.934181 kcal Electronic energy + Delta-G solvation = -20513.107956 eV Core-core repulsion = 17264.211048 eV Total energy + Delta-G solvation = -3248.896908 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.79924 -38.43854 -36.61426 -34.56364 -34.02474 -32.51757 -32.30030 -30.13440 -28.03754 -26.78610 -25.23966 -22.74007 -22.64266 -21.50694 -19.64025 -19.14655 -17.12482 -17.03016 -16.26718 -15.81951 -15.34348 -15.17121 -14.81016 -14.58729 -14.36679 -14.27840 -13.90393 -13.71705 -13.15103 -12.69804 -12.56730 -12.20630 -11.97332 -11.96770 -11.75172 -11.64745 -11.26977 -11.16496 -11.01585 -10.91136 -10.84184 -10.32057 -9.75596 -9.68751 -9.41611 -8.98941 -8.73191 -8.27979 -7.86184 -6.17063 -4.24203 1.90679 2.91535 3.24621 3.29503 3.30860 3.36780 3.57754 4.22462 4.30862 4.40313 4.71373 4.82014 4.97208 5.13872 5.18868 5.25126 5.29270 5.33297 5.43110 5.48694 5.52211 5.59759 5.64822 5.82173 5.92315 6.01367 6.12320 6.13318 6.65299 6.92794 7.05286 7.31783 7.44307 7.51853 7.60635 7.66698 7.96874 8.62845 8.78261 9.11476 9.42597 10.93062 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.043273 B = 0.003250 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.896510 B = 8612.721905 C = 9035.590614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.030 4.030 3 H 0.108 0.892 4 C 0.064 3.936 5 N -0.523 5.523 6 C 0.037 3.963 7 C 0.498 3.502 8 O -0.538 6.538 9 N -0.715 5.715 10 C 0.252 3.748 11 C -0.544 4.544 12 H 0.062 0.938 13 C 0.064 3.936 14 N -0.885 5.885 15 Si 0.904 3.096 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.275 1.275 19 C 0.059 3.941 20 C -0.109 4.109 21 C 0.144 3.856 22 N -0.343 5.343 23 O -0.418 6.418 24 H 0.057 0.943 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.089 0.911 28 H 0.038 0.962 29 H 0.101 0.899 30 H 0.059 0.941 31 H 0.390 0.610 32 H 0.027 0.973 33 H 0.026 0.974 34 H 0.266 0.734 35 H 0.027 0.973 36 H 0.108 0.892 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.160 0.632 6.324 21.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.050 4.050 3 H 0.126 0.874 4 C -0.065 4.065 5 N -0.247 5.247 6 C -0.094 4.094 7 C 0.282 3.718 8 O -0.416 6.416 9 N -0.364 5.364 10 C 0.131 3.869 11 C -0.583 4.583 12 H 0.080 0.920 13 C -0.140 4.140 14 N -0.523 5.523 15 Si 0.731 3.269 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.201 1.201 19 C -0.070 4.070 20 C -0.149 4.149 21 C -0.050 4.050 22 N -0.086 5.086 23 O -0.324 6.324 24 H 0.076 0.924 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.107 0.893 28 H 0.056 0.944 29 H 0.120 0.880 30 H 0.077 0.923 31 H 0.222 0.778 32 H 0.045 0.955 33 H 0.044 0.956 34 H 0.076 0.924 35 H 0.046 0.954 36 H 0.126 0.874 37 H 0.115 0.885 38 H 0.103 0.897 39 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -19.684 1.486 7.221 21.020 hybrid contribution 0.337 -1.556 -1.019 1.890 sum -19.347 -0.069 6.202 20.317 Atomic orbital electron populations 1.21691 0.93237 1.02541 1.02280 1.20366 0.96121 0.99573 0.88933 0.87428 1.22217 0.87473 0.99306 0.97529 1.61366 1.08942 1.51432 1.02958 1.21994 0.94452 1.00042 0.92955 1.20282 0.88501 0.78995 0.84042 1.90629 1.72909 1.45658 1.32427 1.46460 1.10257 1.63082 1.16568 1.19079 0.72847 0.97624 0.97365 1.21193 0.92223 1.44306 1.00557 0.91974 1.24950 0.96837 0.95015 0.97196 1.69961 1.04083 1.45310 1.32917 0.86478 0.77978 0.79312 0.83154 1.20052 1.21072 1.20095 1.22244 1.03536 0.92326 0.88867 1.21305 0.92121 1.03065 0.98407 1.25443 0.94418 0.92233 0.92857 1.76018 1.26283 1.10568 0.95747 1.88462 1.38077 1.76923 1.28911 0.92415 0.91671 0.91949 0.89299 0.94390 0.88049 0.92335 0.77813 0.95512 0.95624 0.92377 0.95445 0.87438 0.88478 0.89662 0.75508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 8.56 37.15 0.32 -0.81 16 2 C -0.03 -0.30 3.17 -91.26 -0.29 -0.59 16 3 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 4 C 0.06 0.64 4.80 -3.71 -0.02 0.62 16 5 N -0.52 -7.02 4.32 -235.81 -1.02 -8.04 16 6 C 0.04 0.49 5.45 -4.98 -0.03 0.47 16 7 C 0.50 9.50 7.47 -10.98 -0.08 9.41 16 8 O -0.54 -12.42 14.31 5.56 0.08 -12.34 16 9 N -0.71 -14.52 5.55 -61.47 -0.34 -14.86 16 10 C 0.25 6.57 5.43 -5.20 -0.03 6.54 16 11 C -0.54 -14.60 9.28 -34.44 -0.32 -14.92 16 12 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 13 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 14 N -0.89 -25.97 13.29 55.43 0.74 -25.23 16 15 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 16 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 17 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 19 C 0.06 0.84 5.13 -3.71 -0.02 0.82 16 20 C -0.11 -1.48 6.11 -27.37 -0.17 -1.64 16 21 C 0.14 1.76 6.47 -78.21 -0.51 1.25 16 22 N -0.34 -4.26 11.00 35.94 0.40 -3.86 16 23 O -0.42 -4.87 13.59 -11.47 -0.16 -5.03 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.55 8.02 -51.93 -0.42 0.13 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.09 0.73 7.94 -51.92 -0.41 0.31 16 28 H 0.04 0.37 8.10 -51.93 -0.42 -0.05 16 29 H 0.10 1.12 7.93 -51.93 -0.41 0.71 16 30 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 31 H 0.39 6.69 8.32 -40.82 -0.34 6.35 16 32 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.03 0.37 8.10 -51.93 -0.42 -0.05 16 36 H 0.11 1.86 5.71 -51.93 -0.30 1.56 16 37 H 0.10 1.38 8.14 -51.92 -0.42 0.95 16 38 H 0.08 1.18 6.98 -51.93 -0.36 0.82 16 39 H 0.40 2.67 9.28 45.56 0.42 3.09 16 LS Contribution 323.52 15.07 4.88 4.88 Total: -1.00 -33.21 323.52 -6.84 -40.04 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -5.15 Total: 5.97 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: -1.24 Total: 2.82 kcal Atomic # 7 Polarization: -51.76 SS G_CDS: -0.23 Total: -51.99 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -0.08 Total: -17.37 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.21 -6.84 -40.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253291688.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.107 kcal (2) G-P(sol) polarization free energy of solvation -33.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds