Wall clock time and date at job start Mon Mar 30 2020 05:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.73878 * 2 1 4 4 C 1.53293 * 109.71249 * 239.38423 * 2 1 3 5 5 N 1.46828 * 109.40125 * 186.52000 * 4 2 1 6 6 C 1.46904 * 110.99979 * 189.75575 * 5 4 2 7 7 C 1.50695 * 109.46798 * 170.00314 * 6 5 4 8 8 O 1.21274 * 120.00413 * 0.27179 * 7 6 5 9 9 N 1.34784 * 119.99635 * 180.02562 * 7 6 5 10 10 C 1.46499 * 119.99971 * 179.97438 * 9 7 6 11 11 C 1.50697 * 109.47276 * 180.02562 * 10 9 7 12 12 H 1.08002 * 119.99866 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99925 * 180.02562 * 11 10 9 14 14 N 1.31512 * 120.00389 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99821 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46843 * 60.00309 * 15 13 11 17 17 H 1.48498 * 109.47022 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47284 * 300.00154 * 15 13 11 19 19 C 1.46829 * 111.56342 * 65.39156 * 5 4 2 20 20 C 1.53295 * 109.39964 * 294.61390 * 19 5 4 21 21 C 1.51432 * 108.24405 * 53.79060 * 20 19 5 22 22 N 1.27964 * 121.10836 * 130.95241 * 21 20 19 23 23 O 1.41597 * 119.99873 * 0.02562 * 22 21 20 24 24 H 1.08998 * 109.47480 * 180.61043 * 1 2 3 25 25 H 1.08998 * 109.47699 * 300.61285 * 1 2 3 26 26 H 1.09000 * 109.47054 * 60.60694 * 1 2 3 27 27 H 1.09007 * 109.47934 * 66.54972 * 4 2 1 28 28 H 1.09001 * 109.48392 * 306.50638 * 4 2 1 29 29 H 1.09005 * 109.47078 * 50.00195 * 6 5 4 30 30 H 1.09002 * 109.47005 * 290.00411 * 6 5 4 31 31 H 0.96999 * 120.00044 * 0.02562 * 9 7 6 32 32 H 1.09004 * 109.47024 * 300.00310 * 10 9 7 33 33 H 1.09005 * 109.47136 * 59.99926 * 10 9 7 34 34 H 0.96998 * 120.00132 * 179.97438 * 14 13 11 35 35 H 1.08998 * 109.48251 * 54.59350 * 19 5 4 36 36 H 1.09000 * 109.48271 * 174.63083 * 19 5 4 37 37 H 1.09009 * 109.70515 * 294.10402 * 20 19 5 38 38 H 1.08997 * 109.74607 * 173.50073 * 20 19 5 39 39 H 0.96706 * 113.99925 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8981 1.0260 0.0000 4 6 2.0470 -0.7349 -1.2419 5 7 3.5068 -0.8677 -1.1576 6 6 4.0652 -1.3561 -2.4256 7 6 5.5677 -1.2476 -2.3876 8 8 6.1195 -0.8115 -1.3996 9 7 6.2987 -1.6399 -3.4499 10 6 7.7594 -1.5339 -3.4133 11 6 8.3321 -2.0338 -4.7145 12 1 7.6739 -2.3948 -5.4909 13 6 9.6965 -2.0313 -4.9133 14 7 10.4981 -1.5931 -3.9673 15 14 10.4064 -2.6516 -6.5259 16 1 9.8791 -1.8323 -7.6466 17 1 11.8871 -2.5452 -6.4884 18 1 10.0175 -4.0710 -6.7246 19 6 3.9064 -1.7314 -0.0394 20 6 3.5155 -1.0642 1.2842 21 6 2.0406 -0.7258 1.2271 22 7 1.2520 -1.0429 2.1837 23 8 1.7548 -1.7214 3.3203 24 1 -0.3634 -1.0276 0.0109 25 1 -0.3634 0.5233 0.8844 26 1 -0.3633 0.5044 -0.8954 27 1 1.7846 -0.1681 -2.1353 28 1 1.5941 -1.7251 -1.2933 29 1 3.6781 -0.7551 -3.2485 30 1 3.7796 -2.3980 -2.5710 31 1 5.8576 -1.9917 -4.2389 32 1 8.0446 -0.4919 -3.2677 33 1 8.1468 -2.1350 -2.5906 34 1 11.4580 -1.5917 -4.1071 35 1 3.4013 -2.6935 -0.1246 36 1 4.9854 -1.8836 -0.0652 37 1 4.0969 -0.1524 1.4219 38 1 3.7039 -1.7486 2.1113 39 1 1.0848 -1.9179 3.9894 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000253291688.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:48 Heat of formation + Delta-G solvation = -58.432308 kcal Electronic energy + Delta-G solvation = -20514.300364 eV Core-core repulsion = 17264.211048 eV Total energy + Delta-G solvation = -3250.089317 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.99620 -39.75779 -37.61231 -36.11430 -35.32120 -34.32265 -33.37961 -31.27269 -29.60812 -28.01233 -26.42273 -24.47611 -23.58548 -22.69724 -21.25750 -20.03687 -18.87137 -17.99520 -17.52962 -17.30658 -16.84113 -16.56044 -16.13755 -15.82039 -15.46148 -15.27749 -15.14117 -15.04599 -14.30233 -14.14776 -13.94939 -13.87101 -13.28964 -12.93175 -12.88977 -12.73520 -12.69190 -12.55826 -12.36473 -12.21758 -12.03059 -11.78622 -11.48773 -10.86507 -10.76864 -10.63775 -10.42958 -9.75884 -9.29188 -8.27383 -6.43956 0.96406 1.44169 1.48158 1.56281 1.85272 2.08440 2.28746 2.47116 3.01099 3.07503 3.41644 3.84772 3.91301 3.99671 4.15344 4.17997 4.32110 4.42034 4.45465 4.51282 4.69875 4.77366 4.81354 4.95263 4.99228 5.14533 5.16832 5.20633 5.27843 5.39368 5.51906 5.72775 5.81690 5.88011 5.98003 6.11184 6.67829 6.80089 7.00130 7.25980 7.58827 8.84557 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.043273 B = 0.003250 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.896510 B = 8612.721905 C = 9035.590614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.029 4.029 3 H 0.110 0.890 4 C 0.066 3.934 5 N -0.540 5.540 6 C 0.051 3.949 7 C 0.492 3.508 8 O -0.585 6.585 9 N -0.710 5.710 10 C 0.269 3.731 11 C -0.556 4.556 12 H 0.085 0.915 13 C 0.003 3.997 14 N -0.932 5.932 15 Si 0.984 3.016 16 H -0.261 1.261 17 H -0.287 1.287 18 H -0.262 1.262 19 C 0.066 3.934 20 C -0.106 4.106 21 C 0.138 3.862 22 N -0.346 5.346 23 O -0.432 6.432 24 H 0.053 0.947 25 H 0.059 0.941 26 H 0.086 0.914 27 H 0.119 0.881 28 H 0.048 0.952 29 H 0.139 0.861 30 H 0.086 0.914 31 H 0.408 0.592 32 H -0.014 1.014 33 H -0.016 1.016 34 H 0.268 0.732 35 H 0.036 0.964 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.738 0.153 4.054 23.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.049 4.049 3 H 0.128 0.872 4 C -0.062 4.062 5 N -0.265 5.265 6 C -0.079 4.079 7 C 0.279 3.721 8 O -0.465 6.465 9 N -0.361 5.361 10 C 0.146 3.854 11 C -0.594 4.594 12 H 0.103 0.897 13 C -0.197 4.197 14 N -0.571 5.571 15 Si 0.807 3.193 16 H -0.185 1.185 17 H -0.213 1.213 18 H -0.187 1.187 19 C -0.063 4.063 20 C -0.146 4.146 21 C -0.056 4.056 22 N -0.088 5.088 23 O -0.341 6.341 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.105 0.895 27 H 0.137 0.863 28 H 0.066 0.934 29 H 0.157 0.843 30 H 0.104 0.896 31 H 0.244 0.756 32 H 0.004 0.996 33 H 0.002 0.998 34 H 0.077 0.923 35 H 0.054 0.946 36 H 0.088 0.912 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -22.342 0.995 4.946 22.905 hybrid contribution 1.114 -1.388 -0.176 1.788 sum -21.229 -0.393 4.770 21.761 Atomic orbital electron populations 1.21634 0.91463 1.02561 1.03238 1.20484 0.97442 0.99250 0.87679 0.87205 1.22350 0.84787 1.00370 0.98679 1.61302 1.11440 1.51313 1.02434 1.21950 0.89264 1.02539 0.94173 1.21414 0.91126 0.77062 0.82489 1.90620 1.74512 1.47330 1.34064 1.46181 1.07982 1.63789 1.18137 1.18475 0.76482 0.94248 0.96223 1.21616 0.92925 1.43896 1.00916 0.89696 1.26071 0.97391 0.94953 1.01269 1.70135 1.04465 1.46854 1.35635 0.85220 0.76717 0.79266 0.78094 1.18534 1.21287 1.18675 1.22025 1.01245 0.93145 0.89894 1.21178 0.93462 1.02098 0.97813 1.25732 0.93336 0.92615 0.93870 1.75983 1.26376 1.10598 0.95869 1.88446 1.39553 1.76823 1.29316 0.92771 0.92223 0.89541 0.86331 0.93392 0.84343 0.89607 0.75584 0.99627 0.99772 0.92319 0.94612 0.91227 0.89952 0.90672 0.73342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.71 8.56 71.98 0.62 -1.09 16 2 C -0.03 -0.50 3.17 -11.21 -0.04 -0.53 16 3 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 4 C 0.07 1.09 4.80 86.42 0.42 1.51 16 5 N -0.54 -13.52 4.32 -899.96 -3.89 -17.41 16 6 C 0.05 1.24 5.45 85.55 0.47 1.70 16 7 C 0.49 18.79 7.47 87.65 0.65 19.45 16 8 O -0.58 -28.23 14.31 -3.01 -0.04 -28.28 16 9 N -0.71 -28.88 5.55 -466.78 -2.59 -31.47 16 10 C 0.27 14.62 5.43 85.63 0.46 15.09 16 11 C -0.56 -29.90 9.28 25.60 0.24 -29.67 16 12 H 0.09 4.08 7.60 -2.91 -0.02 4.06 16 13 C 0.00 0.15 5.46 84.65 0.46 0.61 16 14 N -0.93 -56.36 13.29 21.45 0.28 -56.07 16 15 Si 0.98 41.98 29.54 68.60 2.03 44.00 16 16 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 17 H -0.29 -12.25 7.11 99.48 0.71 -11.54 16 18 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 19 C 0.07 1.89 5.13 86.42 0.44 2.33 16 20 C -0.11 -2.92 6.11 30.18 0.18 -2.73 16 21 C 0.14 3.23 6.47 47.01 0.30 3.54 16 22 N -0.35 -8.19 11.00 -40.09 -0.44 -8.63 16 23 O -0.43 -9.81 13.59 -38.78 -0.53 -10.34 16 24 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.06 0.86 8.02 -2.39 -0.02 0.84 16 26 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.12 1.31 7.94 -2.38 -0.02 1.30 16 28 H 0.05 0.74 8.10 -2.39 -0.02 0.72 16 29 H 0.14 2.40 7.93 -2.38 -0.02 2.38 16 30 H 0.09 1.69 8.13 -2.39 -0.02 1.67 16 31 H 0.41 13.33 8.32 -92.71 -0.77 12.56 16 32 H -0.01 -0.88 8.14 -2.38 -0.02 -0.90 16 33 H -0.02 -0.97 8.14 -2.38 -0.02 -0.99 16 34 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 35 H 0.04 0.94 8.10 -2.39 -0.02 0.92 16 36 H 0.07 2.54 5.71 -2.39 -0.01 2.53 16 37 H 0.08 2.47 8.14 -2.38 -0.02 2.45 16 38 H 0.07 2.17 6.98 -2.39 -0.02 2.15 16 39 H 0.42 5.21 9.28 -74.05 -0.69 4.52 16 Total: -1.00 -75.88 323.52 -1.36 -77.24 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: -0.39 Total: 20.76 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: 4.21 Total: 10.19 kcal Atomic # 7 Polarization: -106.94 SS G_CDS: -6.64 Total: -113.58 kcal Atomic # 8 Polarization: -38.05 SS G_CDS: -0.57 Total: -38.62 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.00 kcal Total: -75.88 -1.36 -77.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253291688.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.812 kcal (2) G-P(sol) polarization free energy of solvation -75.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds