Wall clock time and date at job start Mon Mar 30 2020 05:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.21569 * 2 1 4 4 C 1.52511 * 109.29936 * 240.74993 * 2 1 3 5 5 N 1.47268 * 108.44076 * 193.05723 * 4 2 1 6 6 C 1.34774 * 121.35264 * 241.51357 * 5 4 2 7 7 O 1.21580 * 120.00109 * 359.72230 * 6 5 4 8 8 N 1.34780 * 119.99660 * 179.71801 * 6 5 4 9 9 C 1.46506 * 119.99483 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.46919 * 180.02562 * 9 8 6 11 11 C 1.50696 * 109.47188 * 180.02562 * 10 9 8 12 12 H 1.07995 * 120.00332 * 359.97438 * 11 10 9 13 13 C 1.37880 * 119.99983 * 180.02562 * 11 10 9 14 14 N 1.31517 * 120.00210 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00019 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46845 * 269.99914 * 15 13 11 17 17 H 1.48503 * 109.47399 * 29.99403 * 15 13 11 18 18 H 1.48498 * 109.47295 * 150.00010 * 15 13 11 19 19 C 1.47052 * 117.29273 * 61.24813 * 5 4 2 20 20 C 1.50437 * 108.89151 * 317.50910 * 19 5 4 21 21 O 1.21279 * 118.49024 * 192.69090 * 20 19 5 22 22 N 1.33381 * 123.01932 * 12.70751 * 20 19 5 23 23 C 1.46504 * 117.70371 * 175.66082 * 22 20 19 24 24 H 1.09005 * 109.47184 * 300.62585 * 1 2 3 25 25 H 1.09004 * 109.47289 * 60.62218 * 1 2 3 26 26 H 1.09002 * 109.47214 * 180.62349 * 1 2 3 27 27 H 1.09001 * 109.59998 * 73.30122 * 4 2 1 28 28 H 1.09004 * 109.58603 * 312.80650 * 4 2 1 29 29 H 0.96995 * 120.00515 * 0.02562 * 8 6 5 30 30 H 1.08996 * 109.47200 * 60.00374 * 9 8 6 31 31 H 1.08997 * 109.47351 * 299.99782 * 9 8 6 32 32 H 1.09004 * 109.47223 * 59.99467 * 10 9 8 33 33 H 1.09010 * 109.47071 * 299.99819 * 10 9 8 34 34 H 0.97000 * 119.99462 * 359.97438 * 14 13 11 35 35 H 1.09000 * 109.57008 * 77.33162 * 19 5 4 36 36 H 1.09006 * 109.56619 * 197.68608 * 19 5 4 37 37 H 1.09000 * 109.46996 * 359.97438 * 23 22 20 38 38 H 1.08994 * 109.47291 * 120.00218 * 23 22 20 39 39 H 1.09002 * 109.47040 * 240.00187 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8887 1.0293 0.0000 4 6 2.0340 -0.7033 -1.2559 5 7 3.4724 -0.9738 -1.0928 6 6 4.3855 -0.4391 -1.9275 7 8 4.0273 0.2790 -2.8410 8 7 5.6957 -0.7003 -1.7496 9 6 6.6883 -0.1186 -2.6567 10 6 8.0887 -0.5701 -2.2374 11 6 9.1098 0.0287 -3.1700 12 1 8.7918 0.6671 -3.9810 13 6 10.4501 -0.2392 -2.9887 14 7 10.8375 -1.0170 -2.0014 15 14 11.7158 0.5025 -4.1451 16 1 11.9410 -0.4181 -5.2884 17 1 11.2195 1.8076 -4.6509 18 1 12.9928 0.7075 -3.4156 19 6 3.8725 -1.8461 0.0214 20 6 3.0782 -1.4713 1.2428 21 8 3.4256 -1.9141 2.3171 22 7 2.0094 -0.6746 1.1985 23 6 1.2650 -0.4638 2.4426 24 1 -0.3634 0.5235 0.8844 25 1 -0.3634 0.5041 -0.8955 26 1 -0.3634 -1.0276 0.0112 27 1 1.8764 -0.0615 -2.1226 28 1 1.4961 -1.6419 -1.3899 29 1 5.9815 -1.2734 -1.0211 30 1 6.6282 0.9688 -2.6120 31 1 6.4893 -0.4520 -3.6752 32 1 8.1486 -1.6576 -2.2823 33 1 8.2881 -0.2370 -1.2188 34 1 10.1803 -1.4019 -1.4007 35 1 3.6730 -2.8856 -0.2389 36 1 4.9357 -1.7160 0.2233 37 1 1.7362 -1.0275 3.2479 38 1 1.2670 0.5973 2.6919 39 1 0.2378 -0.8048 2.3137 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282042921.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:20 Heat of formation + Delta-G solvation = -57.577928 kcal Electronic energy + Delta-G solvation = -20885.955365 eV Core-core repulsion = 17635.903097 eV Total energy + Delta-G solvation = -3250.052268 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.14841 -39.47559 -37.22302 -35.29994 -35.07032 -33.12128 -31.91214 -29.60059 -28.69431 -27.66370 -25.36292 -23.94047 -22.92353 -21.45768 -20.49224 -18.99256 -18.24194 -17.67347 -16.70435 -16.34085 -16.16448 -15.85637 -15.35651 -14.71424 -14.24029 -14.08370 -13.77932 -13.68701 -13.58337 -13.20688 -12.85830 -12.57408 -12.47271 -12.22878 -12.15199 -11.84045 -11.63130 -11.61388 -10.99002 -10.56328 -10.45243 -10.17592 -10.03792 -9.90841 -9.13281 -8.93915 -8.71196 -8.50719 -8.35637 -6.44230 -4.14441 2.26035 2.37035 2.75279 3.30490 3.42696 3.46207 3.62200 3.98993 4.04244 4.32534 4.51946 4.55176 4.67566 4.82367 5.01470 5.07947 5.13045 5.16835 5.26702 5.34011 5.41661 5.45110 5.61045 5.68512 5.91194 6.00677 6.21675 6.22138 6.58449 6.76022 6.82405 7.06052 7.26295 7.33614 7.77650 8.02788 8.12143 8.38080 8.70739 8.79675 9.57602 10.96922 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.033879 B = 0.003659 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.279651 B = 7650.987329 C = 8235.034306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.123 3.877 3 H 0.080 0.920 4 C 0.121 3.879 5 N -0.641 5.641 6 C 0.709 3.291 7 O -0.587 6.587 8 N -0.738 5.738 9 C 0.146 3.854 10 C -0.001 4.001 11 C -0.602 4.602 12 H 0.054 0.946 13 C 0.017 3.983 14 N -0.910 5.910 15 Si 1.074 2.926 16 H -0.287 1.287 17 H -0.287 1.287 18 H -0.284 1.284 19 C 0.101 3.899 20 C 0.512 3.488 21 O -0.545 6.545 22 N -0.599 5.599 23 C 0.066 3.934 24 H 0.068 0.932 25 H 0.077 0.923 26 H 0.065 0.935 27 H 0.115 0.885 28 H 0.076 0.924 29 H 0.392 0.608 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.014 0.986 33 H 0.013 0.987 34 H 0.269 0.731 35 H 0.106 0.894 36 H 0.115 0.885 37 H 0.091 0.909 38 H 0.060 0.940 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.188 -0.542 6.017 22.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.019 3.981 3 H 0.098 0.902 4 C -0.003 4.003 5 N -0.381 5.381 6 C 0.410 3.590 7 O -0.465 6.465 8 N -0.392 5.392 9 C 0.024 3.976 10 C -0.039 4.039 11 C -0.641 4.641 12 H 0.072 0.928 13 C -0.187 4.187 14 N -0.546 5.546 15 Si 0.902 3.098 16 H -0.214 1.214 17 H -0.213 1.213 18 H -0.210 1.210 19 C -0.026 4.026 20 C 0.299 3.701 21 O -0.422 6.422 22 N -0.333 5.333 23 C -0.076 4.076 24 H 0.087 0.913 25 H 0.096 0.904 26 H 0.084 0.916 27 H 0.133 0.867 28 H 0.095 0.905 29 H 0.227 0.773 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.032 0.968 33 H 0.032 0.968 34 H 0.079 0.921 35 H 0.123 0.877 36 H 0.133 0.867 37 H 0.110 0.890 38 H 0.079 0.921 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -20.565 -0.140 5.521 21.294 hybrid contribution -1.583 -0.363 0.732 1.782 sum -22.148 -0.504 6.253 23.019 Atomic orbital electron populations 1.22141 0.93246 1.03107 1.03474 1.21364 0.95252 0.97141 0.84353 0.90183 1.21758 0.79367 1.01352 0.97835 1.47366 1.06557 1.52762 1.31435 1.15841 0.81169 0.80225 0.81764 1.90896 1.79647 1.42219 1.33746 1.45731 1.04541 1.53860 1.35104 1.21492 0.87158 0.97298 0.91686 1.19471 0.90307 0.96647 0.97439 1.21891 0.92986 1.33611 1.15589 0.92767 1.25892 0.98311 0.95639 0.98853 1.70774 1.38111 1.29999 1.15701 0.83465 0.75416 0.75815 0.75090 1.21353 1.21326 1.20952 1.21773 1.00706 0.96331 0.83740 1.20289 0.80677 0.78245 0.90879 1.90748 1.67861 1.54127 1.29497 1.47229 1.28233 1.47253 1.10551 1.21815 0.96373 1.02037 0.87384 0.91327 0.90431 0.91636 0.86684 0.90548 0.77289 0.92421 0.92335 0.96803 0.96846 0.92111 0.87674 0.86705 0.89032 0.92137 0.91800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.85 8.25 37.15 0.31 -0.54 16 2 C 0.12 1.04 3.54 -68.64 -0.24 0.79 16 3 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 4 C 0.12 1.18 5.81 -3.87 -0.02 1.15 16 5 N -0.64 -8.16 2.99 -180.17 -0.54 -8.70 16 6 C 0.71 12.07 8.34 -86.92 -0.72 11.34 16 7 O -0.59 -11.92 15.82 5.30 0.08 -11.84 16 8 N -0.74 -13.01 5.46 -65.23 -0.36 -13.36 16 9 C 0.15 3.13 5.61 -4.04 -0.02 3.11 16 10 C 0.00 -0.03 4.40 -27.89 -0.12 -0.15 16 11 C -0.60 -16.92 9.11 -34.44 -0.31 -17.23 16 12 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 13 C 0.02 0.49 5.46 -17.82 -0.10 0.39 16 14 N -0.91 -27.40 13.65 55.43 0.76 -26.64 16 15 Si 1.07 25.12 29.90 -169.99 -5.08 20.03 16 16 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 17 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 C 0.10 1.14 6.44 -5.02 -0.03 1.11 16 20 C 0.51 6.33 7.58 -11.73 -0.09 6.24 16 21 O -0.55 -8.40 15.97 5.56 0.09 -8.31 16 22 N -0.60 -6.01 3.12 -175.37 -0.55 -6.56 16 23 C 0.07 0.54 9.36 59.85 0.56 1.10 16 24 H 0.07 0.32 6.90 -51.93 -0.36 -0.04 16 25 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.12 1.22 7.06 -51.93 -0.37 0.85 16 28 H 0.08 0.60 8.08 -51.93 -0.42 0.18 16 29 H 0.39 6.08 6.11 -40.82 -0.25 5.83 16 30 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.01 0.35 8.01 -51.93 -0.42 -0.07 16 33 H 0.01 0.34 8.01 -51.92 -0.42 -0.08 16 34 H 0.27 7.98 7.22 -40.82 -0.29 7.69 16 35 H 0.11 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.12 1.32 5.95 -51.93 -0.31 1.01 16 37 H 0.09 0.91 6.59 -51.93 -0.34 0.56 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.38 6.90 -51.93 -0.36 0.02 16 LS Contribution 317.69 15.07 4.79 4.79 Total: -1.00 -34.72 317.69 -7.30 -42.02 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -5.69 Total: 1.27 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: -0.80 Total: 7.31 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: -0.68 Total: -55.26 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: 0.17 Total: -20.15 kcal Atomic # 14 Polarization: 25.12 SS G_CDS: -5.08 Total: 20.03 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -34.72 -7.30 -42.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282042921.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.561 kcal (2) G-P(sol) polarization free energy of solvation -34.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds