Wall clock time and date at job start Mon Mar 30 2020 05:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.21569 * 2 1 4 4 C 1.52511 * 109.29936 * 240.74993 * 2 1 3 5 5 N 1.47268 * 108.44076 * 193.05723 * 4 2 1 6 6 C 1.34774 * 121.35264 * 241.51357 * 5 4 2 7 7 O 1.21580 * 120.00109 * 359.72230 * 6 5 4 8 8 N 1.34780 * 119.99660 * 179.71801 * 6 5 4 9 9 C 1.46506 * 119.99483 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.46919 * 180.02562 * 9 8 6 11 11 C 1.50696 * 109.47188 * 180.02562 * 10 9 8 12 12 H 1.07995 * 120.00332 * 359.97438 * 11 10 9 13 13 C 1.37880 * 119.99983 * 180.02562 * 11 10 9 14 14 N 1.31517 * 120.00210 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00019 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46845 * 269.99914 * 15 13 11 17 17 H 1.48503 * 109.47399 * 29.99403 * 15 13 11 18 18 H 1.48498 * 109.47295 * 150.00010 * 15 13 11 19 19 C 1.47052 * 117.29273 * 61.24813 * 5 4 2 20 20 C 1.50437 * 108.89151 * 317.50910 * 19 5 4 21 21 O 1.21279 * 118.49024 * 192.69090 * 20 19 5 22 22 N 1.33381 * 123.01932 * 12.70751 * 20 19 5 23 23 C 1.46504 * 117.70371 * 175.66082 * 22 20 19 24 24 H 1.09005 * 109.47184 * 300.62585 * 1 2 3 25 25 H 1.09004 * 109.47289 * 60.62218 * 1 2 3 26 26 H 1.09002 * 109.47214 * 180.62349 * 1 2 3 27 27 H 1.09001 * 109.59998 * 73.30122 * 4 2 1 28 28 H 1.09004 * 109.58603 * 312.80650 * 4 2 1 29 29 H 0.96995 * 120.00515 * 0.02562 * 8 6 5 30 30 H 1.08996 * 109.47200 * 60.00374 * 9 8 6 31 31 H 1.08997 * 109.47351 * 299.99782 * 9 8 6 32 32 H 1.09004 * 109.47223 * 59.99467 * 10 9 8 33 33 H 1.09010 * 109.47071 * 299.99819 * 10 9 8 34 34 H 0.97000 * 119.99462 * 359.97438 * 14 13 11 35 35 H 1.09000 * 109.57008 * 77.33162 * 19 5 4 36 36 H 1.09006 * 109.56619 * 197.68608 * 19 5 4 37 37 H 1.09000 * 109.46996 * 359.97438 * 23 22 20 38 38 H 1.08994 * 109.47291 * 120.00218 * 23 22 20 39 39 H 1.09002 * 109.47040 * 240.00187 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8887 1.0293 0.0000 4 6 2.0340 -0.7033 -1.2559 5 7 3.4724 -0.9738 -1.0928 6 6 4.3855 -0.4391 -1.9275 7 8 4.0273 0.2790 -2.8410 8 7 5.6957 -0.7003 -1.7496 9 6 6.6883 -0.1186 -2.6567 10 6 8.0887 -0.5701 -2.2374 11 6 9.1098 0.0287 -3.1700 12 1 8.7918 0.6671 -3.9810 13 6 10.4501 -0.2392 -2.9887 14 7 10.8375 -1.0170 -2.0014 15 14 11.7158 0.5025 -4.1451 16 1 11.9410 -0.4181 -5.2884 17 1 11.2195 1.8076 -4.6509 18 1 12.9928 0.7075 -3.4156 19 6 3.8725 -1.8461 0.0214 20 6 3.0782 -1.4713 1.2428 21 8 3.4256 -1.9141 2.3171 22 7 2.0094 -0.6746 1.1985 23 6 1.2650 -0.4638 2.4426 24 1 -0.3634 0.5235 0.8844 25 1 -0.3634 0.5041 -0.8955 26 1 -0.3634 -1.0276 0.0112 27 1 1.8764 -0.0615 -2.1226 28 1 1.4961 -1.6419 -1.3899 29 1 5.9815 -1.2734 -1.0211 30 1 6.6282 0.9688 -2.6120 31 1 6.4893 -0.4520 -3.6752 32 1 8.1486 -1.6576 -2.2823 33 1 8.2881 -0.2370 -1.2188 34 1 10.1803 -1.4019 -1.4007 35 1 3.6730 -2.8856 -0.2389 36 1 4.9357 -1.7160 0.2233 37 1 1.7362 -1.0275 3.2479 38 1 1.2670 0.5973 2.6919 39 1 0.2378 -0.8048 2.3137 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282042921.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:19 Heat of formation + Delta-G solvation = -82.463617 kcal Electronic energy + Delta-G solvation = -20887.034490 eV Core-core repulsion = 17635.903097 eV Total energy + Delta-G solvation = -3251.131392 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.15132 -40.72239 -38.18986 -36.86547 -36.30793 -35.03363 -32.74016 -31.30760 -29.69146 -28.47385 -26.67936 -25.53271 -23.74434 -23.27017 -21.75914 -20.12765 -19.31781 -18.76040 -18.60043 -17.27733 -17.15132 -17.05252 -16.61873 -15.91603 -15.68717 -15.55349 -15.46121 -14.73718 -14.47713 -14.21221 -14.19868 -13.76610 -13.64645 -13.28252 -13.07743 -12.87891 -12.87083 -12.50317 -12.35290 -12.28349 -12.06634 -11.88101 -11.74195 -11.25337 -10.80344 -10.58530 -10.32881 -9.92256 -9.69775 -8.71899 -6.43065 1.28156 1.32566 1.55152 1.63413 1.81749 1.82701 1.99309 2.54483 2.73850 3.13868 3.18837 3.58861 3.82214 3.93829 4.05963 4.22022 4.25364 4.34746 4.43783 4.47983 4.56713 4.66464 4.67331 4.82172 4.85328 4.96759 5.04828 5.09969 5.19232 5.32352 5.33265 5.40382 5.63179 5.93273 6.14250 6.20481 6.51921 6.71976 6.89038 7.33760 7.38042 8.70386 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.033879 B = 0.003659 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.279651 B = 7650.987329 C = 8235.034306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.125 3.875 3 H 0.070 0.930 4 C 0.115 3.885 5 N -0.631 5.631 6 C 0.709 3.291 7 O -0.622 6.622 8 N -0.736 5.736 9 C 0.167 3.833 10 C 0.006 3.994 11 C -0.621 4.621 12 H 0.052 0.948 13 C -0.033 4.033 14 N -0.934 5.934 15 Si 1.121 2.879 16 H -0.271 1.271 17 H -0.270 1.270 18 H -0.282 1.282 19 C 0.101 3.899 20 C 0.508 3.492 21 O -0.582 6.582 22 N -0.596 5.596 23 C 0.064 3.936 24 H 0.079 0.921 25 H 0.090 0.910 26 H 0.074 0.926 27 H 0.108 0.892 28 H 0.103 0.897 29 H 0.403 0.597 30 H 0.046 0.954 31 H 0.050 0.950 32 H 0.006 0.994 33 H 0.003 0.997 34 H 0.258 0.742 35 H 0.131 0.869 36 H 0.110 0.890 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.843 -0.380 5.679 24.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.021 3.979 3 H 0.088 0.912 4 C -0.007 4.007 5 N -0.370 5.370 6 C 0.410 3.590 7 O -0.502 6.502 8 N -0.392 5.392 9 C 0.043 3.957 10 C -0.032 4.032 11 C -0.660 4.660 12 H 0.071 0.929 13 C -0.231 4.231 14 N -0.571 5.571 15 Si 0.942 3.058 16 H -0.197 1.197 17 H -0.195 1.195 18 H -0.208 1.208 19 C -0.025 4.025 20 C 0.295 3.705 21 O -0.463 6.463 22 N -0.328 5.328 23 C -0.078 4.078 24 H 0.098 0.902 25 H 0.109 0.891 26 H 0.093 0.907 27 H 0.126 0.874 28 H 0.121 0.879 29 H 0.240 0.760 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.025 0.975 33 H 0.021 0.979 34 H 0.068 0.932 35 H 0.149 0.851 36 H 0.128 0.872 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -22.304 0.012 5.213 22.905 hybrid contribution -1.179 -0.410 0.884 1.530 sum -23.483 -0.398 6.098 24.265 Atomic orbital electron populations 1.22114 0.90210 1.04091 1.04733 1.21442 0.97486 0.95992 0.82962 0.91189 1.22059 0.77514 1.02791 0.98353 1.47341 1.07164 1.51941 1.30598 1.15877 0.81127 0.80016 0.81943 1.90871 1.80167 1.43783 1.35424 1.45433 1.04593 1.54175 1.34987 1.20956 0.86381 0.96521 0.91836 1.19316 0.91743 0.95863 0.96249 1.22317 0.94090 1.33550 1.16001 0.92918 1.27387 1.00887 0.95291 0.99526 1.70897 1.37932 1.31506 1.16734 0.82882 0.73139 0.76114 0.73703 1.19678 1.19537 1.20765 1.21892 1.00415 0.97285 0.82911 1.20386 0.81162 0.78471 0.90449 1.90738 1.69037 1.55905 1.30601 1.47373 1.27515 1.46096 1.11784 1.21955 0.97291 1.02605 0.85937 0.90168 0.89148 0.90739 0.87402 0.87885 0.76046 0.93589 0.93183 0.97536 0.97921 0.93218 0.85116 0.87206 0.91027 0.90948 0.88966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 8.25 71.98 0.59 -0.49 16 2 C 0.13 1.81 3.54 44.99 0.16 1.97 16 3 H 0.07 1.19 8.14 -2.39 -0.02 1.18 16 4 C 0.12 2.01 5.81 86.07 0.50 2.50 16 5 N -0.63 -15.27 2.99 -842.21 -2.52 -17.79 16 6 C 0.71 23.80 8.34 179.05 1.49 25.29 16 7 O -0.62 -25.14 15.82 -3.97 -0.06 -25.20 16 8 N -0.74 -25.94 5.46 -478.54 -2.61 -28.55 16 9 C 0.17 7.25 5.61 86.38 0.48 7.73 16 10 C 0.01 0.29 4.40 29.85 0.13 0.42 16 11 C -0.62 -35.15 9.11 25.60 0.23 -34.92 16 12 H 0.05 2.94 7.74 -2.91 -0.02 2.91 16 13 C -0.03 -1.87 5.46 84.65 0.46 -1.41 16 14 N -0.93 -56.73 13.65 21.45 0.29 -56.43 16 15 Si 1.12 49.91 29.90 68.60 2.05 51.96 16 16 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 17 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 18 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 19 C 0.10 2.15 6.44 85.45 0.55 2.70 16 20 C 0.51 12.02 7.58 87.79 0.67 12.69 16 21 O -0.58 -17.83 15.97 -3.03 -0.05 -17.88 16 22 N -0.60 -10.85 3.12 -827.92 -2.58 -13.43 16 23 C 0.06 0.91 9.36 127.77 1.20 2.11 16 24 H 0.08 0.43 6.90 -2.38 -0.02 0.42 16 25 H 0.09 0.47 8.14 -2.38 -0.02 0.45 16 26 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.11 2.11 7.06 -2.39 -0.02 2.10 16 28 H 0.10 1.29 8.08 -2.39 -0.02 1.27 16 29 H 0.40 12.46 6.11 -92.71 -0.57 11.90 16 30 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.01 0.33 8.01 -2.38 -0.02 0.31 16 33 H 0.00 0.13 8.01 -2.38 -0.02 0.11 16 34 H 0.26 15.69 7.22 -92.71 -0.67 15.02 16 35 H 0.13 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.11 2.47 5.95 -2.38 -0.01 2.46 16 37 H 0.07 1.36 6.59 -2.39 -0.02 1.34 16 38 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.09 0.80 6.90 -2.39 -0.02 0.78 16 Total: -1.00 -75.21 317.69 1.58 -73.63 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: 0.59 Total: 15.10 kcal Atomic # 6 Polarization: 12.13 SS G_CDS: 6.47 Total: 18.60 kcal Atomic # 7 Polarization: -108.78 SS G_CDS: -7.42 Total: -116.20 kcal Atomic # 8 Polarization: -42.97 SS G_CDS: -0.11 Total: -43.08 kcal Atomic # 14 Polarization: 49.91 SS G_CDS: 2.05 Total: 51.96 kcal Total: -75.21 1.58 -73.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282042921.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.838 kcal (2) G-P(sol) polarization free energy of solvation -75.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds