Wall clock time and date at job start Mon Mar 30 2020 05:44:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 H 1.09002 * 109.17763 * 2 1
4 4 C 1.52992 * 109.21808 * 119.36129 * 2 1 3
5 5 N 1.47266 * 108.18906 * 167.05619 * 4 2 1
6 6 C 1.34774 * 121.35480 * 118.51425 * 5 4 2
7 7 O 1.21593 * 120.00034 * 359.97438 * 6 5 4
8 8 N 1.34778 * 120.00111 * 179.97438 * 6 5 4
9 9 C 1.46499 * 120.00001 * 180.02562 * 8 6 5
10 10 C 1.52994 * 109.47437 * 179.97438 * 9 8 6
11 11 C 1.50702 * 109.47479 * 179.97438 * 10 9 8
12 12 H 1.08003 * 119.99652 * 359.97438 * 11 10 9
13 13 C 1.37877 * 120.00033 * 179.97438 * 11 10 9
14 14 N 1.31508 * 120.00007 * 180.02562 * 13 11 10
15 15 Si 1.86805 * 120.00093 * 359.97438 * 13 11 10
16 16 H 1.48504 * 109.46962 * 89.99832 * 15 13 11
17 17 H 1.48492 * 109.47225 * 209.99791 * 15 13 11
18 18 H 1.48500 * 109.46948 * 330.00136 * 15 13 11
19 19 C 1.47048 * 117.29469 * 298.49765 * 5 4 2
20 20 C 1.50443 * 108.98955 * 42.67598 * 19 5 4
21 21 O 1.21282 * 118.49068 * 167.35637 * 20 19 5
22 22 N 1.33565 * 122.88491 * 347.46505 * 20 19 5
23 23 C 1.46497 * 117.64282 * 184.23921 * 22 20 19
24 24 H 1.09001 * 109.46893 * 294.56280 * 1 2 3
25 25 H 1.09001 * 109.47318 * 54.55535 * 1 2 3
26 26 H 1.08993 * 109.47261 * 174.56056 * 1 2 3
27 27 H 1.09002 * 109.72077 * 47.38086 * 4 2 1
28 28 H 1.09000 * 109.71548 * 286.72529 * 4 2 1
29 29 H 0.96995 * 120.00394 * 0.02562 * 8 6 5
30 30 H 1.09002 * 109.47013 * 300.00066 * 9 8 6
31 31 H 1.09004 * 109.47371 * 59.99420 * 9 8 6
32 32 H 1.09002 * 109.47137 * 300.00069 * 10 9 8
33 33 H 1.09004 * 109.47250 * 59.99424 * 10 9 8
34 34 H 0.97004 * 120.00123 * 180.02562 * 14 13 11
35 35 H 1.08995 * 109.57090 * 162.56007 * 19 5 4
36 36 H 1.09003 * 109.56448 * 282.79638 * 19 5 4
37 37 H 1.09006 * 109.46995 * 214.23518 * 23 22 20
38 38 H 1.09004 * 109.47854 * 334.23675 * 23 22 20
39 39 H 1.09004 * 109.47366 * 94.24134 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8880 1.0295 0.0000
4 6 2.0336 -0.7083 1.2591
5 7 3.4724 -0.9742 1.0926
6 6 4.3855 -0.4405 1.9279
7 8 4.0273 0.2775 2.8416
8 7 5.6956 -0.7024 1.7506
9 6 6.6880 -0.1226 2.6589
10 6 8.0884 -0.5746 2.2401
11 6 9.1094 0.0223 3.1741
12 1 8.7912 0.6606 3.9852
13 6 10.4495 -0.2465 2.9933
14 7 11.3404 0.2740 3.8086
15 14 10.9997 -1.3511 1.5909
16 1 11.2566 -0.5265 0.3828
17 1 12.2446 -2.0613 1.9793
18 1 9.9352 -2.3434 1.2956
19 6 3.8725 -1.8461 -0.0219
20 6 3.0783 -1.4737 -1.2442
21 8 3.4263 -1.9180 -2.3177
22 7 2.0093 -0.6743 -1.1987
23 6 1.2650 -0.4632 -2.4427
24 1 -0.3633 0.4272 0.9347
25 1 -0.3634 0.5960 -0.8372
26 1 -0.3633 -1.0230 -0.0974
27 1 1.4986 -1.6488 1.3909
28 1 1.8758 -0.0698 2.1283
29 1 5.9814 -1.2748 1.0216
30 1 6.6287 0.9649 2.6156
31 1 6.4880 -0.4570 3.6770
32 1 8.1474 -1.6622 2.2838
33 1 8.2887 -0.2406 1.2220
34 1 12.2833 0.0853 3.6812
35 1 4.9356 -1.7161 -0.2237
36 1 3.6749 -2.8859 0.2390
37 1 0.8738 0.5540 -2.4639
38 1 1.9290 -0.6148 -3.2937
39 1 0.4383 -1.1715 -2.4962
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000282042922.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:44:22
Heat of formation + Delta-G solvation = -50.741625 kcal
Electronic energy + Delta-G solvation = -20913.291695 eV
Core-core repulsion = 17663.535872 eV
Total energy + Delta-G solvation = -3249.755824 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 269.153 amu
Computer time = 0.46 seconds
Orbital eigenvalues (eV)
-41.13347 -39.47611 -37.21983 -35.29092 -35.03989 -32.83684 -31.92490 -30.17823
-28.77854 -27.74229 -25.63060 -24.20955 -22.92949 -20.89958 -20.52280 -18.96098
-18.17504 -17.67832 -16.83275 -16.36605 -16.19343 -15.80447 -15.36037 -14.69953
-14.24836 -14.19436 -13.94238 -13.63410 -13.50805 -13.30347 -12.88631 -12.63554
-12.59516 -12.40813 -12.24218 -11.83955 -11.68432 -11.46110 -11.22198 -10.60065
-10.40572 -10.26378 -9.97150 -9.81387 -9.33737 -9.15684 -8.93506 -8.62868
-8.46177 -6.11108 -4.11404 2.24392 2.35946 2.73530 3.26390 3.29839
3.34351 3.35155 3.97483 4.03149 4.30832 4.38144 4.54882 4.67087
4.80341 4.95578 5.07020 5.09678 5.14763 5.21945 5.28138 5.40772
5.44375 5.58758 5.68257 5.89660 5.97043 6.18791 6.20873 6.55005
6.70453 6.79719 7.04832 7.17067 7.22723 7.66279 7.75812 8.05318
8.43813 8.70123 8.93135 9.49008 11.01841
Molecular weight = 269.15amu
Principal moments of inertia in cm(-1)
A = 0.029170 B = 0.004055 C = 0.003664
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 959.664276 B = 6903.916583 C = 7640.232101
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.161 4.161
2 C 0.123 3.877
3 H 0.081 0.919
4 C 0.121 3.879
5 N -0.641 5.641
6 C 0.709 3.291
7 O -0.585 6.585
8 N -0.739 5.739
9 C 0.147 3.853
10 C -0.022 4.022
11 C -0.522 4.522
12 H 0.076 0.924
13 C 0.070 3.930
14 N -0.898 5.898
15 Si 0.881 3.119
16 H -0.276 1.276
17 H -0.287 1.287
18 H -0.266 1.266
19 C 0.100 3.900
20 C 0.512 3.488
21 O -0.544 6.544
22 N -0.600 5.600
23 C 0.074 3.926
24 H 0.077 0.923
25 H 0.067 0.933
26 H 0.065 0.935
27 H 0.076 0.924
28 H 0.116 0.884
29 H 0.391 0.609
30 H 0.062 0.938
31 H 0.063 0.937
32 H 0.022 0.978
33 H 0.017 0.983
34 H 0.265 0.735
35 H 0.115 0.885
36 H 0.105 0.895
37 H 0.069 0.931
38 H 0.083 0.917
39 H 0.057 0.943
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -23.168 -3.694 -10.478 25.694
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.220 4.220
2 C 0.019 3.981
3 H 0.099 0.901
4 C -0.003 4.003
5 N -0.381 5.381
6 C 0.410 3.590
7 O -0.462 6.462
8 N -0.394 5.394
9 C 0.024 3.976
10 C -0.060 4.060
11 C -0.561 4.561
12 H 0.094 0.906
13 C -0.132 4.132
14 N -0.536 5.536
15 Si 0.709 3.291
16 H -0.202 1.202
17 H -0.212 1.212
18 H -0.191 1.191
19 C -0.026 4.026
20 C 0.299 3.701
21 O -0.422 6.422
22 N -0.333 5.333
23 C -0.069 4.069
24 H 0.096 0.904
25 H 0.086 0.914
26 H 0.084 0.916
27 H 0.095 0.905
28 H 0.134 0.866
29 H 0.226 0.774
30 H 0.080 0.920
31 H 0.081 0.919
32 H 0.040 0.960
33 H 0.036 0.964
34 H 0.075 0.925
35 H 0.133 0.867
36 H 0.123 0.877
37 H 0.088 0.912
38 H 0.101 0.899
39 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges -22.970 -3.361 -10.251 25.377
hybrid contribution 0.572 -0.813 -1.083 1.470
sum -22.398 -4.174 -11.334 25.447
Atomic orbital electron populations
1.22152 0.93231 1.03096 1.03490 1.21476 0.95220 0.97089 0.84322
0.90117 1.21859 0.79291 1.01328 0.97797 1.47371 1.06574 1.52871
1.31332 1.15825 0.81137 0.80247 0.81757 1.90912 1.79602 1.42083
1.33646 1.45712 1.04633 1.54016 1.35049 1.21440 0.86608 0.97659
0.91846 1.19808 0.91577 0.97142 0.97506 1.20896 0.90134 1.30884
1.14174 0.90552 1.24990 0.96596 0.95552 0.96086 1.69900 1.01649
1.44493 1.37601 0.86763 0.78337 0.81321 0.82722 1.20202 1.21249
1.19061 1.21767 1.00668 0.96351 0.83817 1.20327 0.80539 0.78412
0.90852 1.90756 1.68082 1.53724 1.29607 1.47306 1.28299 1.47237
1.10505 1.21738 0.96701 1.01200 0.87266 0.90403 0.91433 0.91642
0.90535 0.86630 0.77374 0.91981 0.91872 0.95953 0.96445 0.92532
0.86742 0.87726 0.91249 0.89871 0.92476
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -0.80 8.51 37.16 0.32 -0.49 16
2 C 0.12 0.98 3.51 -68.40 -0.24 0.74 16
3 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16
4 C 0.12 1.12 5.83 -3.63 -0.02 1.10 16
5 N -0.64 -7.75 2.98 -179.88 -0.54 -8.28 16
6 C 0.71 11.53 8.34 -86.92 -0.72 10.81 16
7 O -0.58 -11.52 15.82 5.28 0.08 -11.44 16
8 N -0.74 -12.25 5.46 -65.23 -0.36 -12.60 16
9 C 0.15 2.98 5.61 -4.05 -0.02 2.95 16
10 C -0.02 -0.51 4.16 -27.89 -0.12 -0.63 16
11 C -0.52 -14.58 9.66 -34.44 -0.33 -14.91 16
12 H 0.08 2.30 7.99 -52.48 -0.42 1.88 16
13 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16
14 N -0.90 -27.31 13.96 55.43 0.77 -26.53 16
15 Si 0.88 21.11 27.47 -169.99 -4.67 16.44 16
16 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16
17 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16
18 H -0.27 -6.02 6.54 56.52 0.37 -5.65 16
19 C 0.10 1.06 6.43 -5.02 -0.03 1.03 16
20 C 0.51 6.04 7.59 -11.65 -0.09 5.95 16
21 O -0.54 -8.11 16.14 5.56 0.09 -8.02 16
22 N -0.60 -5.74 3.12 -175.03 -0.55 -6.28 16
23 C 0.07 0.57 9.04 59.85 0.54 1.11 16
24 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16
25 H 0.07 0.29 6.89 -51.93 -0.36 -0.07 16
26 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16
27 H 0.08 0.57 8.09 -51.93 -0.42 0.15 16
28 H 0.12 1.17 7.06 -51.93 -0.37 0.80 16
29 H 0.39 5.56 6.11 -40.82 -0.25 5.31 16
30 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16
31 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16
32 H 0.02 0.50 7.20 -51.93 -0.37 0.12 16
33 H 0.02 0.39 7.57 -51.93 -0.39 -0.01 16
34 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16
35 H 0.11 1.21 5.95 -51.93 -0.31 0.90 16
36 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16
37 H 0.07 0.40 7.21 -51.93 -0.37 0.03 16
38 H 0.08 0.79 6.97 -51.93 -0.36 0.43 16
39 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16
LS Contribution 316.17 15.07 4.76 4.76
Total: -1.00 -34.59 316.17 -6.97 -41.56
By element:
Atomic # 1 Polarization: 6.59 SS G_CDS: -5.75 Total: 0.83 kcal
Atomic # 6 Polarization: 10.39 SS G_CDS: -0.82 Total: 9.57 kcal
Atomic # 7 Polarization: -53.04 SS G_CDS: -0.67 Total: -53.70 kcal
Atomic # 8 Polarization: -19.64 SS G_CDS: 0.17 Total: -19.47 kcal
Atomic # 14 Polarization: 21.11 SS G_CDS: -4.67 Total: 16.44 kcal
Total LS contribution 4.76 Total: 4.76 kcal
Total: -34.59 -6.97 -41.56 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000282042922.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -9.186 kcal
(2) G-P(sol) polarization free energy of solvation -34.590 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.775 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.966 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.556 kcal
(6) G-S(sol) free energy of system = (1) + (5) -50.742 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.46 seconds