Wall clock time and date at job start Mon Mar 30 2020 05:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34234 * 117.00066 * 2 1 4 4 O 1.20824 * 119.99613 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00281 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.49299 * 60.06868 * 5 3 2 7 7 C 1.53036 * 109.49554 * 180.16140 * 5 3 2 8 8 C 1.53042 * 109.53740 * 181.32004 * 7 5 3 9 9 C 1.53625 * 109.24315 * 298.51425 * 8 7 5 10 10 N 1.46933 * 108.54354 * 54.85108 * 9 8 7 11 11 C 1.34777 * 120.62902 * 126.36782 * 10 9 8 12 12 O 1.21279 * 120.00166 * 179.72411 * 11 10 9 13 13 C 1.50706 * 119.99762 * 359.72617 * 11 10 9 14 14 C 1.53002 * 109.46925 * 179.97438 * 13 11 10 15 15 C 1.50696 * 109.47300 * 180.02562 * 14 13 11 16 16 H 1.07999 * 119.99822 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00339 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99769 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00300 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.46692 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47025 * 120.00050 * 19 17 15 22 22 H 1.48500 * 109.46740 * 240.00408 * 19 17 15 23 23 C 1.46923 * 118.73771 * 306.10195 * 10 9 8 24 24 H 1.09001 * 109.46777 * 60.00519 * 1 2 3 25 25 H 1.09003 * 109.46764 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47313 * 299.99791 * 1 2 3 27 27 H 1.08996 * 109.46562 * 301.33856 * 7 5 3 28 28 H 1.08999 * 109.46271 * 61.30388 * 7 5 3 29 29 H 1.09003 * 109.49658 * 58.58587 * 8 7 5 30 30 H 1.09002 * 109.50124 * 178.65559 * 8 7 5 31 31 H 1.09005 * 109.73975 * 295.11860 * 9 8 7 32 32 H 1.08997 * 109.67134 * 174.54731 * 9 8 7 33 33 H 1.09000 * 109.47318 * 299.99141 * 13 11 10 34 34 H 1.09000 * 109.47161 * 59.99772 * 13 11 10 35 35 H 1.09004 * 109.46930 * 299.99901 * 14 13 11 36 36 H 1.09004 * 109.47059 * 59.99503 * 14 13 11 37 37 H 0.97000 * 120.00540 * 179.97438 * 18 17 15 38 38 H 1.09007 * 109.58345 * 173.64477 * 23 10 9 39 39 H 1.09004 * 109.58281 * 293.92276 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9567 0.7818 -0.8897 7 6 4.0008 2.7423 0.0045 8 6 5.5287 2.8238 -0.0281 9 6 6.0987 2.1477 1.2281 10 7 5.5691 0.7792 1.3033 11 6 6.4019 -0.2737 1.4231 12 8 5.9522 -1.3981 1.4893 13 6 7.8919 -0.0538 1.4750 14 6 8.6019 -1.4021 1.6126 15 6 10.0918 -1.1823 1.6650 16 1 10.4923 -0.1810 1.6065 17 6 10.9437 -2.2593 1.7888 18 7 10.4560 -3.4786 1.8605 19 14 12.7905 -1.9868 1.8545 20 1 13.0801 -0.5336 1.7559 21 1 13.3229 -2.5112 3.1378 22 1 13.4365 -2.6987 0.7226 23 6 4.1143 0.5809 1.2514 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 3.5916 3.2446 -0.8720 28 1 3.6305 3.2283 0.9072 29 1 5.9011 2.3164 -0.9181 30 1 5.8370 3.8691 -0.0494 31 1 5.7976 2.7052 2.1150 32 1 7.1864 2.1157 1.1660 33 1 8.2188 0.4373 0.5584 34 1 8.1369 0.5745 2.3313 35 1 8.2749 -1.8930 2.5293 36 1 8.3568 -2.0309 0.7565 37 1 11.0552 -4.2364 1.9472 38 1 3.8923 -0.4853 1.2046 39 1 3.6549 1.0110 2.1414 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291805347.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:33 Heat of formation + Delta-G solvation = -137.633540 kcal Electronic energy + Delta-G solvation = -20754.213155 eV Core-core repulsion = 17468.396665 eV Total energy + Delta-G solvation = -3285.816491 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.97361 -39.65831 -37.37275 -36.51182 -33.56646 -32.97895 -31.75761 -30.77197 -28.02117 -26.34155 -25.01841 -24.17930 -22.07837 -21.35770 -20.17208 -18.63312 -17.73084 -17.21072 -16.76330 -16.56195 -15.83390 -15.39169 -15.15121 -14.61740 -14.41236 -14.11005 -13.93968 -13.40214 -13.30858 -13.08584 -12.73627 -12.31052 -12.15152 -12.11531 -11.73912 -11.32264 -11.18761 -11.04238 -10.99455 -10.94801 -10.81576 -10.64944 -10.56363 -9.97342 -9.62088 -9.18918 -9.00903 -8.52363 -8.32205 -5.96392 -4.00823 1.92283 2.44751 3.16769 3.21827 3.32418 3.39762 3.42805 4.34375 4.45766 4.49070 4.57809 4.79840 4.85243 4.92392 4.95285 5.02408 5.19283 5.27654 5.32040 5.38708 5.49127 5.60803 5.67968 5.69546 5.79876 5.92481 6.07355 6.13976 6.19096 6.19880 6.62857 6.87795 7.49043 7.68157 7.74381 7.85584 8.06699 8.37624 8.69329 9.07758 9.62839 11.14572 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.035299 B = 0.003642 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.044096 B = 7686.449386 C = 8319.330027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.354 6.354 3 C 0.471 3.529 4 O -0.508 6.508 5 C -0.096 4.096 6 H 0.114 0.886 7 C -0.102 4.102 8 C -0.135 4.135 9 C 0.105 3.895 10 N -0.625 5.625 11 C 0.514 3.486 12 O -0.530 6.530 13 C -0.128 4.128 14 C 0.036 3.964 15 C -0.526 4.526 16 H 0.056 0.944 17 C 0.058 3.942 18 N -0.889 5.889 19 Si 0.892 3.108 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C 0.123 3.877 24 H 0.062 0.938 25 H 0.102 0.898 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.097 0.903 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.024 0.976 36 H 0.024 0.976 37 H 0.260 0.740 38 H 0.105 0.895 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.272 13.063 -3.937 21.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.270 6.270 3 C 0.313 3.687 4 O -0.395 6.395 5 C -0.116 4.116 6 H 0.132 0.868 7 C -0.140 4.140 8 C -0.173 4.173 9 C -0.018 4.018 10 N -0.361 5.361 11 C 0.304 3.696 12 O -0.404 6.404 13 C -0.167 4.167 14 C -0.002 4.002 15 C -0.564 4.564 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.528 5.528 19 Si 0.720 3.280 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.001 4.001 24 H 0.080 0.920 25 H 0.121 0.879 26 H 0.081 0.919 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.115 0.885 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.042 0.958 36 H 0.042 0.958 37 H 0.070 0.930 38 H 0.123 0.877 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -16.675 12.525 -3.870 21.211 hybrid contribution 0.683 0.221 -0.032 0.718 sum -15.992 12.745 -3.903 20.819 Atomic orbital electron populations 1.23286 0.76313 1.03878 1.02420 1.86573 1.23445 1.33266 1.83710 1.23675 0.91763 0.81329 0.71897 1.90653 1.67130 1.36390 1.45369 1.21528 0.86934 1.00150 1.03017 0.86764 1.21431 0.95987 0.92793 1.03766 1.22033 0.94648 1.01579 0.99049 1.21869 1.00325 0.82095 0.97551 1.48295 1.05339 1.07174 1.75312 1.21652 0.90165 0.83562 0.74173 1.90670 1.78285 1.23054 1.48428 1.21894 0.88131 1.04348 1.02367 1.18923 0.93584 0.89097 0.98556 1.21245 0.91430 0.92970 1.50804 0.92555 1.25027 0.98823 0.95218 0.95334 1.70007 1.34751 0.98154 1.49873 0.86540 0.85658 0.78199 0.77596 1.19741 1.21037 1.21027 1.21312 0.81577 1.02675 0.94522 0.91957 0.87940 0.91863 0.90775 0.90799 0.90891 0.89971 0.91427 0.88512 0.90134 0.90171 0.95805 0.95794 0.93002 0.87700 0.91560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.35 16 2 O -0.35 -4.02 10.49 -39.27 -0.41 -4.43 16 3 C 0.47 5.55 7.26 36.01 0.26 5.81 16 4 O -0.51 -6.83 15.73 -18.75 -0.29 -7.13 16 5 C -0.10 -1.05 2.78 -91.66 -0.25 -1.30 16 6 H 0.11 1.24 8.14 -51.93 -0.42 0.81 16 7 C -0.10 -0.96 4.46 -26.69 -0.12 -1.08 16 8 C -0.13 -1.17 6.10 -26.39 -0.16 -1.33 16 9 C 0.10 1.11 6.37 -3.48 -0.02 1.08 16 10 N -0.62 -8.90 2.97 -172.50 -0.51 -9.41 16 11 C 0.51 9.80 7.70 -10.98 -0.08 9.72 16 12 O -0.53 -12.34 15.39 5.56 0.09 -12.25 16 13 C -0.13 -2.53 3.98 -27.88 -0.11 -2.65 16 14 C 0.04 0.96 4.26 -27.88 -0.12 0.84 16 15 C -0.53 -14.74 9.11 -34.44 -0.31 -15.06 16 16 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -27.26 13.29 55.43 0.74 -26.52 16 19 Si 0.89 21.48 29.54 -169.99 -5.02 16.45 16 20 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 C 0.12 1.58 5.64 -3.72 -0.02 1.55 16 24 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 25 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 27 H 0.07 0.68 8.07 -51.93 -0.42 0.26 16 28 H 0.07 0.70 8.13 -51.93 -0.42 0.28 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.10 1.02 5.93 -51.93 -0.31 0.71 16 33 H 0.08 1.45 7.70 -51.93 -0.40 1.05 16 34 H 0.08 1.45 7.93 -51.93 -0.41 1.04 16 35 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 36 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 37 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 38 H 0.10 1.56 7.01 -51.92 -0.36 1.20 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 324.54 15.07 4.89 4.89 Total: -1.00 -34.71 324.54 -6.59 -41.30 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: -6.09 Total: -3.40 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: 0.02 Total: 0.50 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: 0.22 Total: -35.93 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -0.62 Total: -23.81 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -34.71 -6.59 -41.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291805347.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.332 kcal (2) G-P(sol) polarization free energy of solvation -34.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds