Wall clock time and date at job start Mon Mar 30 2020 05:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34234 * 117.00066 * 2 1 4 4 O 1.20824 * 119.99613 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00281 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.49299 * 60.06868 * 5 3 2 7 7 C 1.53036 * 109.49554 * 180.16140 * 5 3 2 8 8 C 1.53042 * 109.53740 * 181.32004 * 7 5 3 9 9 C 1.53625 * 109.24315 * 298.51425 * 8 7 5 10 10 N 1.46933 * 108.54354 * 54.85108 * 9 8 7 11 11 C 1.34777 * 120.62902 * 126.36782 * 10 9 8 12 12 O 1.21279 * 120.00166 * 179.72411 * 11 10 9 13 13 C 1.50706 * 119.99762 * 359.72617 * 11 10 9 14 14 C 1.53002 * 109.46925 * 179.97438 * 13 11 10 15 15 C 1.50696 * 109.47300 * 180.02562 * 14 13 11 16 16 H 1.07999 * 119.99822 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00339 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99769 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00300 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.46692 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47025 * 120.00050 * 19 17 15 22 22 H 1.48500 * 109.46740 * 240.00408 * 19 17 15 23 23 C 1.46923 * 118.73771 * 306.10195 * 10 9 8 24 24 H 1.09001 * 109.46777 * 60.00519 * 1 2 3 25 25 H 1.09003 * 109.46764 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47313 * 299.99791 * 1 2 3 27 27 H 1.08996 * 109.46562 * 301.33856 * 7 5 3 28 28 H 1.08999 * 109.46271 * 61.30388 * 7 5 3 29 29 H 1.09003 * 109.49658 * 58.58587 * 8 7 5 30 30 H 1.09002 * 109.50124 * 178.65559 * 8 7 5 31 31 H 1.09005 * 109.73975 * 295.11860 * 9 8 7 32 32 H 1.08997 * 109.67134 * 174.54731 * 9 8 7 33 33 H 1.09000 * 109.47318 * 299.99141 * 13 11 10 34 34 H 1.09000 * 109.47161 * 59.99772 * 13 11 10 35 35 H 1.09004 * 109.46930 * 299.99901 * 14 13 11 36 36 H 1.09004 * 109.47059 * 59.99503 * 14 13 11 37 37 H 0.97000 * 120.00540 * 179.97438 * 18 17 15 38 38 H 1.09007 * 109.58345 * 173.64477 * 23 10 9 39 39 H 1.09004 * 109.58281 * 293.92276 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9567 0.7818 -0.8897 7 6 4.0008 2.7423 0.0045 8 6 5.5287 2.8238 -0.0281 9 6 6.0987 2.1477 1.2281 10 7 5.5691 0.7792 1.3033 11 6 6.4019 -0.2737 1.4231 12 8 5.9522 -1.3981 1.4893 13 6 7.8919 -0.0538 1.4750 14 6 8.6019 -1.4021 1.6126 15 6 10.0918 -1.1823 1.6650 16 1 10.4923 -0.1810 1.6065 17 6 10.9437 -2.2593 1.7888 18 7 10.4560 -3.4786 1.8605 19 14 12.7905 -1.9868 1.8545 20 1 13.0801 -0.5336 1.7559 21 1 13.3229 -2.5112 3.1378 22 1 13.4365 -2.6987 0.7226 23 6 4.1143 0.5809 1.2514 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 3.5916 3.2446 -0.8720 28 1 3.6305 3.2283 0.9072 29 1 5.9011 2.3164 -0.9181 30 1 5.8370 3.8691 -0.0494 31 1 5.7976 2.7052 2.1150 32 1 7.1864 2.1157 1.1660 33 1 8.2188 0.4373 0.5584 34 1 8.1369 0.5745 2.3313 35 1 8.2749 -1.8930 2.5293 36 1 8.3568 -2.0309 0.7565 37 1 11.0552 -4.2364 1.9472 38 1 3.8923 -0.4853 1.2046 39 1 3.6549 1.0110 2.1414 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291805347.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:33 Heat of formation + Delta-G solvation = -160.123450 kcal Electronic energy + Delta-G solvation = -20755.188391 eV Core-core repulsion = 17468.396665 eV Total energy + Delta-G solvation = -3286.791727 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.93039 -40.92562 -38.51009 -37.50321 -35.58596 -34.20518 -32.98522 -32.34153 -28.79938 -28.04255 -26.18609 -25.36396 -23.39193 -22.72012 -21.16479 -19.87680 -18.92873 -18.57115 -17.90158 -17.66152 -17.32242 -16.65304 -16.50858 -16.35551 -15.55773 -15.09417 -14.88321 -14.58545 -14.43665 -14.19989 -14.15120 -13.73316 -13.57739 -13.19259 -13.00561 -12.83333 -12.57562 -12.43370 -12.06038 -12.00718 -11.90682 -11.84770 -11.68724 -11.57362 -11.48699 -11.25291 -10.66623 -10.55449 -9.69933 -8.15646 -6.29417 0.97982 1.44476 1.45683 1.58822 1.60781 1.69859 2.06170 2.45299 3.17718 3.47489 3.60436 3.68607 3.90467 4.01290 4.13139 4.16035 4.26038 4.29873 4.45422 4.52479 4.54617 4.60253 4.67173 4.70630 4.79322 4.89555 4.99917 5.09237 5.17216 5.27569 5.37691 5.50462 5.57739 5.65568 5.87970 6.19904 6.37682 6.59505 6.89498 7.24820 7.40938 8.97274 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.035299 B = 0.003642 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.044096 B = 7686.449386 C = 8319.330027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.368 6.368 3 C 0.474 3.526 4 O -0.524 6.524 5 C -0.090 4.090 6 H 0.114 0.886 7 C -0.098 4.098 8 C -0.127 4.127 9 C 0.094 3.906 10 N -0.612 5.612 11 C 0.512 3.488 12 O -0.587 6.587 13 C -0.114 4.114 14 C 0.041 3.959 15 C -0.539 4.539 16 H 0.078 0.922 17 C -0.008 4.008 18 N -0.938 5.938 19 Si 0.973 3.027 20 H -0.251 1.251 21 H -0.282 1.282 22 H -0.282 1.282 23 C 0.123 3.877 24 H 0.067 0.933 25 H 0.125 0.875 26 H 0.066 0.934 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.112 0.888 31 H 0.090 0.910 32 H 0.102 0.898 33 H 0.107 0.893 34 H 0.105 0.895 35 H -0.019 1.019 36 H -0.018 1.018 37 H 0.262 0.738 38 H 0.078 0.922 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.604 16.081 -4.241 22.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.285 6.285 3 C 0.318 3.682 4 O -0.413 6.413 5 C -0.110 4.110 6 H 0.131 0.869 7 C -0.135 4.135 8 C -0.164 4.164 9 C -0.027 4.027 10 N -0.345 5.345 11 C 0.303 3.697 12 O -0.467 6.467 13 C -0.154 4.154 14 C 0.004 3.996 15 C -0.577 4.577 16 H 0.096 0.904 17 C -0.205 4.205 18 N -0.579 5.579 19 Si 0.797 3.203 20 H -0.174 1.174 21 H -0.208 1.208 22 H -0.208 1.208 23 C 0.000 4.000 24 H 0.086 0.914 25 H 0.144 0.856 26 H 0.084 0.916 27 H 0.099 0.901 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.131 0.869 31 H 0.109 0.891 32 H 0.120 0.880 33 H 0.125 0.875 34 H 0.123 0.877 35 H -0.001 1.001 36 H 0.000 1.000 37 H 0.071 0.929 38 H 0.096 0.904 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -16.031 15.619 -4.184 22.769 hybrid contribution 0.351 -0.717 0.064 0.801 sum -15.680 14.901 -4.120 22.020 Atomic orbital electron populations 1.23569 0.74561 1.05633 1.02824 1.86568 1.25323 1.33169 1.83395 1.23743 0.91963 0.81184 0.71354 1.90641 1.67537 1.36850 1.46311 1.21500 0.86494 1.01308 1.01729 0.86851 1.21442 0.96555 0.91219 1.04303 1.22014 0.93763 1.03041 0.97623 1.22269 1.00818 0.79906 0.99741 1.48222 1.05552 1.07695 1.73079 1.21458 0.90373 0.83755 0.74118 1.90653 1.78995 1.25523 1.51483 1.21648 0.88363 1.00696 1.04688 1.18712 0.94387 0.91924 0.94623 1.21741 0.92046 0.93954 1.49975 0.90399 1.26138 1.04839 0.94787 0.94768 1.70187 1.36963 0.99445 1.51270 0.85279 0.78335 0.79225 0.77437 1.17400 1.20815 1.20761 1.21337 0.80726 1.01614 0.96356 0.91446 0.85649 0.91565 0.90077 0.90413 0.91300 0.86928 0.89137 0.87963 0.87540 0.87696 1.00065 0.99982 0.92931 0.90356 0.90008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.56 113.37 1.20 1.61 16 2 O -0.37 -8.22 10.49 -51.46 -0.54 -8.76 16 3 C 0.47 10.74 7.26 71.24 0.52 11.26 16 4 O -0.52 -13.40 15.73 21.97 0.35 -13.05 16 5 C -0.09 -1.86 2.78 -11.47 -0.03 -1.89 16 6 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 7 C -0.10 -1.55 4.46 30.62 0.14 -1.42 16 8 C -0.13 -1.74 6.10 30.82 0.19 -1.55 16 9 C 0.09 1.68 6.37 86.51 0.55 2.23 16 10 N -0.61 -16.69 2.97 -818.05 -2.43 -19.12 16 11 C 0.51 19.76 7.70 87.66 0.67 20.43 16 12 O -0.59 -28.86 15.39 -3.03 -0.05 -28.90 16 13 C -0.11 -4.48 3.98 29.85 0.12 -4.36 16 14 C 0.04 2.27 4.26 29.85 0.13 2.40 16 15 C -0.54 -30.25 9.11 25.60 0.23 -30.02 16 16 H 0.08 3.94 7.74 -2.91 -0.02 3.92 16 17 C -0.01 -0.47 5.46 84.65 0.46 0.00 16 18 N -0.94 -59.40 13.29 21.45 0.28 -59.12 16 19 Si 0.97 43.86 29.54 68.60 2.03 45.88 16 20 H -0.25 -10.31 7.11 99.48 0.71 -9.61 16 21 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 22 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 23 C 0.12 3.09 5.64 86.36 0.49 3.58 16 24 H 0.07 0.95 8.13 -2.39 -0.02 0.93 16 25 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.07 0.96 8.13 -2.39 -0.02 0.94 16 27 H 0.08 1.24 8.07 -2.39 -0.02 1.22 16 28 H 0.08 1.22 8.13 -2.39 -0.02 1.20 16 29 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 32 H 0.10 1.76 5.93 -2.39 -0.01 1.74 16 33 H 0.11 3.60 7.70 -2.39 -0.02 3.59 16 34 H 0.10 3.58 7.93 -2.39 -0.02 3.56 16 35 H -0.02 -1.20 8.10 -2.38 -0.02 -1.22 16 36 H -0.02 -1.15 8.10 -2.39 -0.02 -1.16 16 37 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 38 H 0.08 2.43 7.01 -2.38 -0.02 2.41 16 39 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 Total: -1.00 -78.89 324.54 5.33 -73.56 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: 1.03 Total: 7.26 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: 4.66 Total: 2.26 kcal Atomic # 7 Polarization: -76.09 SS G_CDS: -2.14 Total: -78.23 kcal Atomic # 8 Polarization: -50.48 SS G_CDS: -0.24 Total: -50.72 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.88 kcal Total: -78.89 5.33 -73.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291805347.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.568 kcal (2) G-P(sol) polarization free energy of solvation -78.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds