Wall clock time and date at job start Mon Mar 30 2020 05:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 113.99742 * 2 1 4 4 C 1.52998 * 109.47084 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47436 * 175.00053 * 4 3 2 6 6 N 1.46900 * 109.47165 * 295.00092 * 4 3 2 7 7 C 1.46900 * 110.99974 * 205.00086 * 6 4 3 8 8 C 1.53005 * 109.47078 * 180.02562 * 7 6 4 9 9 O 1.42893 * 109.47432 * 64.99478 * 8 7 6 10 10 C 1.42903 * 114.00356 * 180.02562 * 9 8 7 11 11 C 1.50690 * 109.47289 * 180.02562 * 10 9 8 12 12 H 1.07999 * 120.00446 * 359.97438 * 11 10 9 13 13 C 1.37879 * 120.00211 * 179.97438 * 11 10 9 14 14 N 1.31522 * 119.99845 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00380 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.47290 * 60.00082 * 15 13 11 17 17 H 1.48501 * 109.47105 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46789 * 299.99683 * 15 13 11 19 19 C 1.50702 * 109.47175 * 54.99775 * 4 3 2 20 20 C 1.34511 * 125.78588 * 100.00367 * 19 4 3 21 21 C 1.41388 * 106.84088 * 180.02562 * 20 19 4 22 22 C 1.34515 * 106.83800 * 359.97438 * 21 20 19 23 23 O 1.34298 * 125.79070 * 279.69757 * 19 4 3 24 24 H 1.09001 * 109.47103 * 60.00503 * 1 2 3 25 25 H 1.09004 * 109.47054 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47187 * 300.00063 * 1 2 3 27 27 H 1.08997 * 109.47450 * 299.99752 * 3 2 1 28 28 H 1.09003 * 109.47048 * 59.99889 * 3 2 1 29 29 H 1.00897 * 110.99886 * 328.95306 * 6 4 3 30 30 H 1.09001 * 109.47383 * 299.99335 * 7 6 4 31 31 H 1.08996 * 109.47450 * 59.99831 * 7 6 4 32 32 H 1.09005 * 109.46910 * 184.99950 * 8 7 6 33 33 H 1.09007 * 109.46671 * 304.99511 * 8 7 6 34 34 H 1.09008 * 109.46934 * 300.00067 * 10 9 8 35 35 H 1.08998 * 109.46752 * 59.99893 * 10 9 8 36 36 H 0.96998 * 120.00489 * 179.97438 * 14 13 11 37 37 H 1.08000 * 126.58670 * 0.02997 * 20 19 4 38 38 H 1.07996 * 126.58465 * 179.97438 * 21 20 19 39 39 H 1.07995 * 125.78921 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.9785 2.1766 -0.0889 6 7 3.9769 0.5628 1.2562 7 6 5.3586 0.9456 1.5759 8 6 5.7820 0.2795 2.8867 9 8 5.8133 -1.1384 2.7122 10 6 6.1985 -1.8600 3.8839 11 6 6.1980 -3.3373 3.5869 12 1 5.9299 -3.6901 2.6020 13 6 6.5399 -4.2388 4.5726 14 7 6.8669 -3.8093 5.7719 15 14 6.5386 -6.0702 4.2047 16 1 7.4991 -6.3556 3.1088 17 1 6.9391 -6.8200 5.4223 18 1 5.1759 -6.4909 3.7907 19 6 3.9724 0.3324 -1.1629 20 6 4.4511 0.7869 -2.3348 21 6 4.7328 -0.3477 -3.1300 22 6 4.4098 -1.4278 -2.3960 23 8 3.9552 -1.0099 -1.2033 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 1.6885 1.8464 0.8900 29 1 3.3526 0.7954 2.0139 30 1 6.0207 0.6206 0.7734 31 1 5.4203 2.0287 1.6818 32 1 6.7735 0.6328 3.1700 33 1 5.0682 0.5335 3.6704 34 1 7.1987 -1.5512 4.1883 35 1 5.4931 -1.6504 4.6879 36 1 7.1070 -4.4434 6.4655 37 1 4.5932 1.8203 -2.6148 38 1 5.1309 -0.3475 -4.1339 39 1 4.5046 -2.4565 -2.7107 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294514108.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:53 Heat of formation + Delta-G solvation = -69.285765 kcal Electronic energy + Delta-G solvation = -20748.775901 eV Core-core repulsion = 17465.923192 eV Total energy + Delta-G solvation = -3282.852709 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.21154 -38.34006 -36.97492 -35.54294 -32.77448 -32.57113 -31.28159 -28.55316 -27.72652 -26.51363 -25.69634 -22.86229 -22.22436 -21.60289 -21.29058 -19.90452 -17.27473 -16.58492 -16.41546 -16.10183 -15.93957 -15.48189 -15.08355 -15.01156 -14.42092 -14.31662 -13.93369 -13.65930 -13.10844 -12.79108 -12.54314 -12.41795 -12.29763 -12.15268 -11.64579 -11.50848 -11.27069 -11.10207 -10.75796 -10.67228 -10.38444 -9.91576 -9.74196 -9.62168 -8.99737 -8.70460 -8.25369 -8.21066 -8.03532 -6.01196 -4.01378 2.06376 2.82243 3.33659 3.39882 3.41304 3.46575 3.65794 4.13811 4.44079 4.70746 4.81341 4.95762 5.10868 5.18237 5.20615 5.23951 5.30026 5.31428 5.35250 5.39824 5.54555 5.64009 5.72483 5.99076 6.02621 6.05391 6.14224 6.34303 6.35369 6.69588 7.00506 7.15316 7.20623 7.52743 7.54006 7.57963 7.91465 8.27662 8.73005 9.13701 9.63005 11.10600 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.017146 B = 0.004483 C = 0.004336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.646430 B = 6244.491143 C = 6456.243520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.362 6.362 3 C 0.062 3.938 4 C 0.165 3.835 5 H 0.084 0.916 6 N -0.659 5.659 7 C 0.064 3.936 8 C 0.067 3.933 9 O -0.377 6.377 10 C 0.194 3.806 11 C -0.508 4.508 12 H 0.066 0.934 13 C 0.055 3.945 14 N -0.902 5.902 15 Si 0.907 3.093 16 H -0.275 1.275 17 H -0.287 1.287 18 H -0.275 1.275 19 C 0.027 3.973 20 C -0.232 4.232 21 C -0.225 4.225 22 C -0.040 4.040 23 O -0.131 6.131 24 H 0.036 0.964 25 H 0.086 0.914 26 H 0.039 0.961 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.347 0.653 30 H 0.078 0.922 31 H 0.035 0.965 32 H 0.040 0.960 33 H 0.034 0.966 34 H 0.001 0.999 35 H 0.003 0.997 36 H 0.263 0.737 37 H 0.139 0.861 38 H 0.141 0.859 39 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.657 13.538 -14.060 21.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.280 6.280 3 C -0.016 4.016 4 C 0.055 3.945 5 H 0.101 0.899 6 N -0.292 5.292 7 C -0.065 4.065 8 C -0.012 4.012 9 O -0.296 6.296 10 C 0.120 3.880 11 C -0.546 4.546 12 H 0.085 0.915 13 C -0.146 4.146 14 N -0.542 5.542 15 Si 0.734 3.266 16 H -0.201 1.201 17 H -0.213 1.213 18 H -0.200 1.200 19 C -0.026 4.026 20 C -0.252 4.252 21 C -0.244 4.244 22 C -0.110 4.110 23 O -0.023 6.023 24 H 0.054 0.946 25 H 0.105 0.895 26 H 0.058 0.942 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.167 0.833 30 H 0.096 0.904 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.019 0.981 35 H 0.021 0.979 36 H 0.072 0.928 37 H 0.157 0.843 38 H 0.159 0.841 39 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -9.455 12.424 -14.082 21.025 hybrid contribution -0.045 0.410 0.239 0.477 sum -9.500 12.834 -13.843 21.133 Atomic orbital electron populations 1.22747 0.81585 1.02934 0.99356 1.88157 1.18876 1.25840 1.95145 1.22713 0.92150 0.86232 1.00488 1.20118 0.92952 0.93328 0.88145 0.89885 1.60119 1.03215 1.62386 1.03463 1.22092 0.89933 0.95601 0.98859 1.22193 0.98282 0.85891 0.94799 1.87998 1.89688 1.13869 1.38057 1.20168 0.93544 0.91464 0.82846 1.21041 1.45388 0.89986 0.98206 0.91542 1.24937 0.95308 0.99547 0.94759 1.69960 1.46678 1.34865 1.02700 0.86410 0.78702 0.83972 0.77476 1.20071 1.21263 1.20002 1.22044 1.02730 0.81588 0.96221 1.21442 1.09048 0.99788 0.94932 1.21657 1.08770 0.92252 1.01712 1.24083 1.02592 1.00010 0.84288 1.84241 1.63516 1.21518 1.33074 0.94584 0.89501 0.94237 0.92541 0.92545 0.83284 0.90368 0.94678 0.94180 0.94769 0.98097 0.97945 0.92766 0.84272 0.84120 0.78676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.42 16 2 O -0.36 -5.04 10.03 -35.23 -0.35 -5.39 16 3 C 0.06 0.67 5.48 37.16 0.20 0.87 16 4 C 0.16 2.08 2.87 -68.86 -0.20 1.89 16 5 H 0.08 0.82 7.79 -51.93 -0.40 0.42 16 6 N -0.66 -10.20 6.19 -107.95 -0.67 -10.87 16 7 C 0.06 0.99 5.86 -3.82 -0.02 0.97 16 8 C 0.07 1.27 6.22 37.16 0.23 1.50 16 9 O -0.38 -9.65 10.27 -35.23 -0.36 -10.01 16 10 C 0.19 5.57 5.69 36.00 0.20 5.78 16 11 C -0.51 -15.66 9.43 -34.44 -0.32 -15.98 16 12 H 0.07 2.06 7.81 -52.49 -0.41 1.65 16 13 C 0.05 1.65 5.46 -17.82 -0.10 1.55 16 14 N -0.90 -27.79 13.29 55.43 0.74 -27.06 16 15 Si 0.91 22.69 29.54 -169.99 -5.02 17.67 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.27 -6.77 7.11 56.52 0.40 -6.36 16 19 C 0.03 0.41 5.47 -35.62 -0.19 0.21 16 20 C -0.23 -3.08 10.80 -39.70 -0.43 -3.51 16 21 C -0.22 -2.95 10.91 -39.70 -0.43 -3.38 16 22 C -0.04 -0.58 12.09 29.42 0.36 -0.23 16 23 O -0.13 -2.33 10.53 5.71 0.06 -2.27 16 24 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.49 8.02 -51.93 -0.42 0.08 16 29 H 0.35 4.90 8.28 -39.29 -0.33 4.57 16 30 H 0.08 1.33 8.00 -51.93 -0.42 0.92 16 31 H 0.04 0.42 8.05 -51.93 -0.42 0.00 16 32 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.03 0.62 8.14 -51.92 -0.42 0.20 16 34 H 0.00 0.04 8.14 -51.92 -0.42 -0.39 16 35 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 36 H 0.26 7.58 8.31 -40.82 -0.34 7.25 16 37 H 0.14 1.47 8.06 -52.49 -0.42 1.05 16 38 H 0.14 1.47 8.06 -52.49 -0.42 1.05 16 39 H 0.20 2.19 8.06 -52.49 -0.42 1.77 16 LS Contribution 338.04 15.07 5.09 5.09 Total: -1.00 -35.94 338.04 -6.28 -42.22 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -6.18 Total: -0.46 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: 0.41 Total: -8.92 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: 0.07 Total: -37.93 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -0.66 Total: -17.68 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -35.94 -6.28 -42.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294514108.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.068 kcal (2) G-P(sol) polarization free energy of solvation -35.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds