Wall clock time and date at job start Mon Mar 30 2020 04:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.47044 * 2 1 4 4 C 1.46504 * 120.00346 * 269.99842 * 3 2 1 5 5 C 1.50704 * 109.47107 * 270.00562 * 4 3 2 6 6 H 1.08001 * 119.99965 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99674 * 180.02562 * 5 4 3 8 8 N 1.31518 * 120.00280 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99891 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47082 * 59.99731 * 9 7 5 11 11 H 1.48496 * 109.47383 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46941 * 300.00100 * 9 7 5 13 13 C 1.38606 * 119.99784 * 90.00434 * 3 2 1 14 14 N 1.29692 * 124.95176 * 359.97438 * 13 3 2 15 15 C 1.32117 * 116.86593 * 179.97438 * 14 13 3 16 16 C 1.50706 * 122.70857 * 180.02562 * 15 14 13 17 17 C 1.52999 * 109.46953 * 265.00610 * 16 15 14 18 18 N 1.46906 * 109.46897 * 180.02562 * 17 16 15 19 19 C 1.46898 * 110.99888 * 179.97438 * 18 17 16 20 20 C 1.33324 * 114.58024 * 0.27649 * 15 14 13 21 21 S 1.70965 * 124.94889 * 179.97438 * 13 3 2 22 22 H 1.08996 * 109.47486 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47042 * 300.00481 * 1 2 3 24 24 H 1.09005 * 109.47171 * 59.99615 * 1 2 3 25 25 H 1.08994 * 109.46903 * 240.00448 * 2 1 3 26 26 H 1.08991 * 109.46988 * 120.00289 * 2 1 3 27 27 H 1.09001 * 109.46514 * 29.99890 * 4 3 2 28 28 H 1.08991 * 109.47087 * 150.00131 * 4 3 2 29 29 H 0.96998 * 119.99725 * 180.02562 * 8 7 5 30 30 H 1.09000 * 109.46974 * 145.00358 * 16 15 14 31 31 H 1.09001 * 109.46547 * 25.00449 * 16 15 14 32 32 H 1.09000 * 109.47486 * 60.00062 * 17 16 15 33 33 H 1.09001 * 109.47362 * 299.99339 * 17 16 15 34 34 H 1.00902 * 110.99923 * 303.95801 * 18 17 16 35 35 H 1.08995 * 109.47296 * 299.99911 * 19 18 17 36 36 H 1.08997 * 109.47334 * 60.00212 * 19 18 17 37 37 H 1.09000 * 109.46674 * 180.02562 * 19 18 17 38 38 H 1.08007 * 125.94817 * 179.69427 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0719 -1.2687 5 6 3.6859 1.8350 -1.7038 6 1 4.3429 1.2308 -1.0958 7 6 4.1494 2.3906 -2.8774 8 7 3.3495 3.1268 -3.6175 9 14 5.9139 2.0976 -3.4164 10 1 6.1417 0.6410 -3.5943 11 1 6.1614 2.7975 -4.7024 12 1 6.8410 2.6207 -2.3810 13 6 2.2494 2.0346 1.2004 14 7 2.0660 1.5169 2.3753 15 6 2.3383 2.2850 3.4152 16 6 2.1732 1.8175 4.8384 17 6 0.8023 2.2506 5.3617 18 7 0.6417 1.7954 6.7492 19 6 -0.6659 2.1949 7.2862 20 6 2.7658 3.5089 3.1039 21 16 2.8178 3.6402 1.3479 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 1.8933 -0.5137 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 1.5818 1.6877 -2.0283 28 1 2.0956 3.1410 -1.1383 29 1 3.6756 3.5172 -4.4433 30 1 2.9545 2.2575 5.4583 31 1 2.2493 0.7307 4.8748 32 1 0.0211 1.8107 4.7419 33 1 0.7263 3.3374 5.3253 34 1 0.7725 0.7974 6.8197 35 1 -0.7519 3.2812 7.2627 36 1 -1.4576 1.7545 6.6801 37 1 -0.7583 1.8457 8.3146 38 1 3.0347 4.2843 3.8061 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000304276850.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:44 Heat of formation + Delta-G solvation = 39.332967 kcal Electronic energy + Delta-G solvation = -18247.224331 eV Core-core repulsion = 15444.127306 eV Total energy + Delta-G solvation = -2803.097025 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.126 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.24486 -36.87934 -35.98420 -32.91590 -31.69715 -30.33704 -28.32786 -26.69570 -25.24665 -23.72352 -23.24061 -22.29949 -20.32063 -18.71141 -17.32680 -16.55890 -16.11670 -15.65161 -14.95218 -14.81960 -14.46726 -14.27997 -13.88409 -13.25654 -13.15224 -12.86098 -12.81638 -12.41059 -12.02229 -11.78966 -11.77980 -11.58613 -11.41652 -11.11190 -11.01021 -10.80765 -10.50531 -10.34933 -10.17279 -9.94119 -9.08194 -8.84125 -8.61398 -8.60439 -8.38653 -6.77509 -6.16824 -4.28902 1.75025 2.00407 2.64413 3.24409 3.28798 3.31856 3.53946 3.77361 4.18444 4.32888 4.95514 5.11993 5.16729 5.21089 5.32917 5.43443 5.55590 5.65037 5.69604 5.77653 5.81377 5.87421 5.93871 6.11553 6.21901 6.31097 6.35776 6.60762 6.67808 6.82249 6.95347 7.07254 7.20636 7.59125 7.79710 7.98468 8.05127 8.63851 8.81578 9.38780 10.85882 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.028166 B = 0.004539 C = 0.004198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.873126 B = 6167.590046 C = 6668.516540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.130 3.870 3 N -0.557 5.557 4 C 0.250 3.750 5 C -0.540 4.540 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.891 5.891 9 Si 0.899 3.101 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.343 3.657 14 N -0.579 5.579 15 C 0.117 3.883 16 C -0.038 4.038 17 C 0.066 3.934 18 N -0.697 5.697 19 C 0.028 3.972 20 C -0.342 4.342 21 S 0.107 5.893 22 H 0.057 0.943 23 H 0.052 0.948 24 H 0.054 0.946 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.044 0.956 28 H 0.036 0.964 29 H 0.267 0.733 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.033 0.967 33 H 0.073 0.927 34 H 0.341 0.659 35 H 0.064 0.936 36 H 0.021 0.979 37 H 0.066 0.934 38 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.670 -2.041 13.736 14.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.004 3.996 3 N -0.272 5.272 4 C 0.130 3.870 5 C -0.579 4.579 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.529 5.529 9 Si 0.726 3.274 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.199 1.199 13 C -0.028 4.028 14 N -0.307 5.307 15 C -0.017 4.017 16 C -0.078 4.078 17 C -0.063 4.063 18 N -0.327 5.327 19 C -0.122 4.122 20 C -0.484 4.484 21 S 0.358 5.642 22 H 0.076 0.924 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.096 0.904 26 H 0.091 0.909 27 H 0.062 0.938 28 H 0.054 0.946 29 H 0.077 0.923 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.052 0.948 33 H 0.091 0.909 34 H 0.158 0.842 35 H 0.083 0.917 36 H 0.039 0.961 37 H 0.084 0.916 38 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -5.293 -1.197 12.888 13.984 hybrid contribution 0.257 -0.975 -0.123 1.016 sum -5.036 -2.172 12.765 13.893 Atomic orbital electron populations 1.22138 0.97011 1.01112 1.01911 1.21279 0.93255 0.82497 1.02529 1.46835 1.65525 1.12922 1.01958 1.19501 0.97202 0.92341 0.77931 1.21441 0.96532 1.32900 1.06993 0.91980 1.24931 0.98117 0.94572 0.96042 1.69911 1.35871 1.32829 1.14328 0.86528 0.84352 0.78532 0.77955 1.20088 1.21054 1.19913 1.23574 0.95435 0.93836 0.89916 1.66299 1.31775 1.36428 0.96207 1.19480 0.98184 0.89732 0.94307 1.20001 0.97130 1.01445 0.89241 1.21938 0.96455 1.00720 0.87216 1.60426 1.31659 1.19969 1.20678 1.22171 0.89215 1.01383 0.99424 1.26106 1.21457 1.02907 0.97940 1.84320 1.66307 1.12367 1.01181 0.92422 0.92840 0.92701 0.90420 0.90904 0.93790 0.94635 0.92348 0.89952 0.90785 0.94845 0.90858 0.84217 0.91744 0.96072 0.91564 0.82254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.57 10.24 37.16 0.38 -2.19 16 2 C 0.13 2.38 6.25 -4.04 -0.03 2.36 16 3 N -0.56 -11.97 2.56 -177.40 -0.45 -12.43 16 4 C 0.25 6.08 5.13 -5.19 -0.03 6.05 16 5 C -0.54 -14.33 9.39 -34.44 -0.32 -14.65 16 6 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 7 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 8 N -0.89 -24.84 13.29 55.43 0.74 -24.10 16 9 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 13 C 0.34 7.22 7.74 -87.68 -0.68 6.54 16 14 N -0.58 -11.41 9.80 -11.36 -0.11 -11.52 16 15 C 0.12 2.01 5.99 -84.18 -0.50 1.50 16 16 C -0.04 -0.50 5.88 -27.88 -0.16 -0.67 16 17 C 0.07 0.81 5.67 -3.82 -0.02 0.79 16 18 N -0.70 -7.30 6.86 -121.13 -0.83 -8.13 16 19 C 0.03 0.25 10.70 60.06 0.64 0.89 16 20 C -0.34 -5.81 11.11 29.02 0.32 -5.49 16 21 S 0.11 2.12 21.68 -107.50 -2.33 -0.21 16 22 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 23 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 25 H 0.08 1.41 8.07 -51.93 -0.42 0.99 16 26 H 0.07 1.32 7.62 -51.93 -0.40 0.92 16 27 H 0.04 1.11 8.07 -51.93 -0.42 0.69 16 28 H 0.04 0.92 7.04 -51.93 -0.37 0.55 16 29 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.34 3.17 8.82 -39.29 -0.35 2.82 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.16 2.28 8.06 -52.48 -0.42 1.86 16 LS Contribution 333.82 15.07 5.03 5.03 Total: -1.00 -28.29 333.82 -9.62 -37.91 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -6.14 Total: 0.77 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: -0.50 Total: -3.18 kcal Atomic # 7 Polarization: -55.52 SS G_CDS: -0.66 Total: -56.18 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: 2.12 SS G_CDS: -2.33 Total: -0.21 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.29 -9.62 -37.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304276850.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.242 kcal (2) G-P(sol) polarization free energy of solvation -28.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds