Wall clock time and date at job start Mon Mar 30 2020 04:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.47044 * 2 1 4 4 C 1.46504 * 120.00346 * 269.99842 * 3 2 1 5 5 C 1.50704 * 109.47107 * 270.00562 * 4 3 2 6 6 H 1.08001 * 119.99965 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99674 * 180.02562 * 5 4 3 8 8 N 1.31518 * 120.00280 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99891 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47082 * 59.99731 * 9 7 5 11 11 H 1.48496 * 109.47383 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46941 * 300.00100 * 9 7 5 13 13 C 1.38606 * 119.99784 * 90.00434 * 3 2 1 14 14 N 1.29692 * 124.95176 * 359.97438 * 13 3 2 15 15 C 1.32117 * 116.86593 * 179.97438 * 14 13 3 16 16 C 1.50706 * 122.70857 * 180.02562 * 15 14 13 17 17 C 1.52999 * 109.46953 * 265.00610 * 16 15 14 18 18 N 1.46906 * 109.46897 * 180.02562 * 17 16 15 19 19 C 1.46898 * 110.99888 * 179.97438 * 18 17 16 20 20 C 1.33324 * 114.58024 * 0.27649 * 15 14 13 21 21 S 1.70965 * 124.94889 * 179.97438 * 13 3 2 22 22 H 1.08996 * 109.47486 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47042 * 300.00481 * 1 2 3 24 24 H 1.09005 * 109.47171 * 59.99615 * 1 2 3 25 25 H 1.08994 * 109.46903 * 240.00448 * 2 1 3 26 26 H 1.08991 * 109.46988 * 120.00289 * 2 1 3 27 27 H 1.09001 * 109.46514 * 29.99890 * 4 3 2 28 28 H 1.08991 * 109.47087 * 150.00131 * 4 3 2 29 29 H 0.96998 * 119.99725 * 180.02562 * 8 7 5 30 30 H 1.09000 * 109.46974 * 145.00358 * 16 15 14 31 31 H 1.09001 * 109.46547 * 25.00449 * 16 15 14 32 32 H 1.09000 * 109.47486 * 60.00062 * 17 16 15 33 33 H 1.09001 * 109.47362 * 299.99339 * 17 16 15 34 34 H 1.00902 * 110.99923 * 303.95801 * 18 17 16 35 35 H 1.08995 * 109.47296 * 299.99911 * 19 18 17 36 36 H 1.08997 * 109.47334 * 60.00212 * 19 18 17 37 37 H 1.09000 * 109.46674 * 180.02562 * 19 18 17 38 38 H 1.08007 * 125.94817 * 179.69427 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0719 -1.2687 5 6 3.6859 1.8350 -1.7038 6 1 4.3429 1.2308 -1.0958 7 6 4.1494 2.3906 -2.8774 8 7 3.3495 3.1268 -3.6175 9 14 5.9139 2.0976 -3.4164 10 1 6.1417 0.6410 -3.5943 11 1 6.1614 2.7975 -4.7024 12 1 6.8410 2.6207 -2.3810 13 6 2.2494 2.0346 1.2004 14 7 2.0660 1.5169 2.3753 15 6 2.3383 2.2850 3.4152 16 6 2.1732 1.8175 4.8384 17 6 0.8023 2.2506 5.3617 18 7 0.6417 1.7954 6.7492 19 6 -0.6659 2.1949 7.2862 20 6 2.7658 3.5089 3.1039 21 16 2.8178 3.6402 1.3479 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 1.8933 -0.5137 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 1.5818 1.6877 -2.0283 28 1 2.0956 3.1410 -1.1383 29 1 3.6756 3.5172 -4.4433 30 1 2.9545 2.2575 5.4583 31 1 2.2493 0.7307 4.8748 32 1 0.0211 1.8107 4.7419 33 1 0.7263 3.3374 5.3253 34 1 0.7725 0.7974 6.8197 35 1 -0.7519 3.2812 7.2627 36 1 -1.4576 1.7545 6.6801 37 1 -0.7583 1.8457 8.3146 38 1 3.0347 4.2843 3.8061 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000304276850.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:43 Heat of formation + Delta-G solvation = 22.491731 kcal Electronic energy + Delta-G solvation = -18247.954621 eV Core-core repulsion = 15444.127306 eV Total energy + Delta-G solvation = -2803.827316 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.126 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.71091 -38.30765 -37.07184 -34.89607 -32.89559 -31.86425 -29.73425 -28.43378 -26.30524 -25.12801 -24.96602 -23.36981 -21.80651 -20.17418 -18.92667 -18.51706 -17.31919 -16.89003 -16.72161 -16.08716 -15.76140 -15.59629 -15.24912 -14.56412 -14.48313 -14.27981 -13.99871 -13.92531 -13.53382 -13.42252 -13.10648 -12.73603 -12.66888 -12.62674 -12.57379 -12.20909 -12.17201 -11.84982 -11.82599 -11.69354 -10.67660 -10.66831 -10.37563 -9.96071 -9.44787 -8.48699 -8.08843 -6.40978 0.25408 0.46983 1.17942 1.39857 1.41083 1.49134 2.08763 2.15637 2.40417 3.04755 3.25776 3.74180 4.12300 4.18948 4.27079 4.38549 4.45015 4.54832 4.57289 4.65301 4.68555 4.71198 4.81407 4.89148 4.98880 5.04063 5.05718 5.08287 5.17060 5.29537 5.47890 5.59993 5.94913 5.97378 6.03095 6.42878 6.44815 6.68070 7.15592 7.31917 8.80414 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.028166 B = 0.004539 C = 0.004198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.873126 B = 6167.590046 C = 6668.516540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.128 3.872 3 N -0.569 5.569 4 C 0.268 3.732 5 C -0.549 4.549 6 H 0.051 0.949 7 C 0.022 3.978 8 N -0.920 5.920 9 Si 0.959 3.041 10 H -0.269 1.269 11 H -0.278 1.278 12 H -0.273 1.273 13 C 0.323 3.677 14 N -0.580 5.580 15 C 0.104 3.896 16 C -0.029 4.029 17 C 0.076 3.924 18 N -0.698 5.698 19 C 0.026 3.974 20 C -0.322 4.322 21 S 0.068 5.932 22 H 0.088 0.912 23 H 0.043 0.957 24 H 0.046 0.954 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.030 0.970 28 H 0.017 0.983 29 H 0.270 0.730 30 H 0.099 0.901 31 H 0.075 0.925 32 H 0.017 0.983 33 H 0.071 0.929 34 H 0.348 0.652 35 H 0.063 0.937 36 H 0.020 0.980 37 H 0.083 0.917 38 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.320 -2.529 15.437 16.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.004 3.996 3 N -0.285 5.285 4 C 0.147 3.853 5 C -0.588 4.588 6 H 0.070 0.930 7 C -0.178 4.178 8 N -0.559 5.559 9 Si 0.784 3.216 10 H -0.194 1.194 11 H -0.203 1.203 12 H -0.198 1.198 13 C -0.047 4.047 14 N -0.309 5.309 15 C -0.028 4.028 16 C -0.069 4.069 17 C -0.053 4.053 18 N -0.330 5.330 19 C -0.123 4.123 20 C -0.463 4.463 21 S 0.318 5.682 22 H 0.107 0.893 23 H 0.063 0.937 24 H 0.065 0.935 25 H 0.092 0.908 26 H 0.093 0.907 27 H 0.048 0.952 28 H 0.035 0.965 29 H 0.079 0.921 30 H 0.117 0.883 31 H 0.094 0.906 32 H 0.036 0.964 33 H 0.090 0.910 34 H 0.166 0.834 35 H 0.082 0.918 36 H 0.039 0.961 37 H 0.102 0.898 38 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -4.956 -1.703 14.636 15.546 hybrid contribution 0.119 -0.812 -0.530 0.977 sum -4.837 -2.516 14.106 15.123 Atomic orbital electron populations 1.22021 0.95005 1.02844 1.00983 1.21412 0.94854 0.81015 1.02362 1.46697 1.66692 1.13842 1.01305 1.19040 0.95854 0.91450 0.78988 1.21613 0.97414 1.32677 1.07062 0.93047 1.25679 1.01836 0.94264 0.96062 1.70003 1.37559 1.33588 1.14737 0.85591 0.79718 0.78684 0.77648 1.19394 1.20299 1.19796 1.23727 0.96578 0.94207 0.90190 1.66339 1.31286 1.36952 0.96287 1.20078 0.97751 0.89680 0.95341 1.20036 0.98373 1.01613 0.86919 1.21761 0.95129 1.00457 0.87997 1.60422 1.32692 1.20631 1.19205 1.22237 0.88318 1.01453 1.00294 1.26405 1.20180 1.03565 0.96163 1.84424 1.66658 1.12747 1.04327 0.89306 0.93735 0.93509 0.90767 0.90734 0.95216 0.96510 0.92123 0.88286 0.90606 0.96448 0.91018 0.83398 0.91775 0.96144 0.89804 0.79162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.64 10.24 71.98 0.74 -3.90 16 2 C 0.13 4.71 6.25 86.38 0.54 5.25 16 3 N -0.57 -24.91 2.56 -715.16 -1.83 -26.74 16 4 C 0.27 13.43 5.13 85.63 0.44 13.87 16 5 C -0.55 -29.66 9.39 25.60 0.24 -29.42 16 6 H 0.05 2.83 7.81 -2.91 -0.02 2.81 16 7 C 0.02 1.20 5.46 84.65 0.46 1.66 16 8 N -0.92 -51.90 13.29 21.45 0.28 -51.62 16 9 Si 0.96 42.76 29.54 68.60 2.03 44.78 16 10 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 11 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 12 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 13 C 0.32 13.71 7.74 179.32 1.39 15.10 16 14 N -0.58 -22.51 9.80 -189.86 -1.86 -24.37 16 15 C 0.10 3.41 5.99 41.41 0.25 3.66 16 16 C -0.03 -0.71 5.88 29.85 0.18 -0.53 16 17 C 0.08 1.71 5.67 86.30 0.49 2.20 16 18 N -0.70 -12.93 6.86 -537.15 -3.68 -16.62 16 19 C 0.03 0.41 10.70 127.69 1.37 1.77 16 20 C -0.32 -10.40 11.11 66.71 0.74 -9.66 16 21 S 0.07 2.72 21.68 -56.49 -1.22 1.49 16 22 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 23 H 0.04 1.44 8.14 -2.39 -0.02 1.43 16 24 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 25 H 0.07 2.73 8.07 -2.39 -0.02 2.71 16 26 H 0.07 2.68 7.62 -2.39 -0.02 2.66 16 27 H 0.03 1.56 8.07 -2.39 -0.02 1.54 16 28 H 0.02 0.91 7.04 -2.39 -0.02 0.89 16 29 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 30 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.02 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.35 5.61 8.82 -89.69 -0.79 4.82 16 35 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.02 0.32 8.14 -2.39 -0.02 0.30 16 37 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.19 4.88 8.06 -2.91 -0.02 4.85 16 Total: -1.00 -60.21 333.82 0.78 -59.42 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: 0.25 Total: 13.65 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: 6.83 Total: 0.00 kcal Atomic # 7 Polarization: -112.25 SS G_CDS: -7.09 Total: -119.34 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Atomic # 16 Polarization: 2.72 SS G_CDS: -1.22 Total: 1.49 kcal Total: -60.21 0.78 -59.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304276850.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.914 kcal (2) G-P(sol) polarization free energy of solvation -60.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds