Wall clock time and date at job start Mon Mar 30 2020 04:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.37682 * 126.50469 * 2 1 4 4 C 1.34387 * 106.95849 * 180.23449 * 3 2 1 5 5 N 1.34365 * 108.34333 * 359.76131 * 4 3 2 6 6 C 1.31265 * 109.30535 * 359.97438 * 5 4 3 7 7 S 1.76199 * 125.80152 * 179.97438 * 6 5 4 8 8 C 1.81002 * 100.00182 * 0.02902 * 7 6 5 9 9 C 1.52998 * 109.47085 * 180.02562 * 8 7 6 10 10 N 1.46906 * 109.46618 * 179.97438 * 9 8 7 11 11 C 1.46903 * 110.99699 * 179.97438 * 10 9 8 12 12 C 1.52996 * 109.47245 * 180.02562 * 11 10 9 13 13 C 1.52999 * 109.47169 * 180.02562 * 12 11 10 14 14 C 1.50704 * 109.46726 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00487 * 359.97438 * 14 13 12 16 16 C 1.37884 * 119.99597 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00203 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99894 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47238 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47251 * 119.99700 * 18 16 14 21 21 H 1.48503 * 109.46995 * 239.99796 * 18 16 14 22 22 H 1.09003 * 109.46928 * 270.17593 * 1 2 3 23 23 H 1.09004 * 109.46629 * 30.17160 * 1 2 3 24 24 H 1.08994 * 109.47492 * 150.17799 * 1 2 3 25 25 H 1.08004 * 126.51970 * 359.95255 * 3 2 1 26 26 H 1.07998 * 125.82949 * 179.73698 * 4 3 2 27 27 H 1.09005 * 109.46889 * 299.99975 * 8 7 6 28 28 H 1.09000 * 109.47231 * 59.99947 * 8 7 6 29 29 H 1.09001 * 109.47131 * 299.99123 * 9 8 7 30 30 H 1.08996 * 109.47558 * 60.00200 * 9 8 7 31 31 H 1.00893 * 111.00108 * 303.95220 * 10 9 8 32 32 H 1.09000 * 109.47297 * 300.00334 * 11 10 9 33 33 H 1.09007 * 109.46995 * 60.00151 * 11 10 9 34 34 H 1.09000 * 109.47215 * 300.00346 * 12 11 10 35 35 H 1.08999 * 109.47179 * 59.99860 * 12 11 10 36 36 H 1.08996 * 109.47238 * 299.99633 * 13 12 11 37 37 H 1.08999 * 109.47005 * 60.00535 * 13 12 11 38 38 H 0.97000 * 120.00547 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2841 1.1067 0.0000 4 6 3.5505 0.6571 -0.0053 5 7 3.5223 -0.6863 -0.0031 6 6 2.2747 -1.0941 0.0039 7 16 1.7390 -2.7727 0.0085 8 6 3.3416 -3.6141 0.0018 9 6 3.1226 -5.1283 0.0041 10 7 4.4233 -5.8111 -0.0020 11 6 4.2520 -7.2701 0.0006 12 6 5.6251 -7.9449 -0.0052 13 6 5.4466 -9.4645 -0.0031 14 6 6.7992 -10.1291 -0.0094 15 1 7.6963 -9.5278 -0.0148 16 6 6.8912 -11.5048 -0.0094 17 7 5.7988 -12.2370 -0.0034 18 14 8.5677 -12.3286 -0.0165 19 1 9.6295 -11.2904 -0.0221 20 1 8.7086 -13.1748 1.1957 21 1 8.6979 -13.1757 -1.2293 22 1 -0.3633 0.0032 1.0277 23 1 -0.3633 0.8885 -0.5165 24 1 -0.3634 -0.8915 -0.5110 25 1 1.9688 2.1397 -0.0007 26 1 4.4392 1.2707 -0.0107 27 1 3.8979 -3.3291 -0.8912 28 1 3.9064 -3.3270 0.8888 29 1 2.5663 -5.4137 0.8969 30 1 2.5580 -5.4152 -0.8831 31 1 4.9841 -5.5140 -0.7863 32 1 3.7039 -7.5700 0.8938 33 1 3.6946 -7.5721 -0.8862 34 1 6.1736 -7.6450 -0.8981 35 1 6.1820 -7.6429 0.8818 36 1 4.8980 -9.7647 0.8896 37 1 4.8899 -9.7661 -0.8904 38 1 5.8635 -13.2048 -0.0030 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309557770.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:15 Heat of formation + Delta-G solvation = 44.964444 kcal Electronic energy + Delta-G solvation = -16919.928908 eV Core-core repulsion = 14117.076082 eV Total energy + Delta-G solvation = -2802.852826 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.126 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.05636 -36.75573 -34.37399 -33.77216 -31.92208 -30.04010 -29.38411 -27.37330 -25.87407 -23.06595 -22.19735 -21.81502 -21.32062 -20.02239 -18.06934 -16.38581 -16.22901 -16.11806 -15.88383 -15.01501 -14.66725 -14.40700 -14.32182 -13.91070 -13.82514 -13.41273 -13.12070 -13.06087 -12.48570 -12.29105 -11.62895 -11.48029 -11.30064 -10.85635 -10.81113 -10.55737 -10.44738 -10.35992 -10.00929 -9.67389 -9.63849 -9.31807 -9.01732 -8.31830 -8.23407 -7.68811 -5.96708 -3.98506 0.95225 1.58043 1.90746 2.54333 2.77136 3.33903 3.41163 3.46069 4.26629 4.43181 4.46553 4.53645 4.65240 4.78883 4.91774 4.94001 5.00548 5.28820 5.39199 5.42483 5.64699 5.77592 5.78375 5.88044 5.94977 6.32908 6.37988 6.55109 6.73117 6.76258 7.16077 7.28643 7.57852 7.58897 7.72122 7.86640 8.03941 8.47298 9.08969 9.65394 11.14801 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.057252 B = 0.002297 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.948229 B =12188.592805 C =12633.848706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.451 5.451 3 C -0.052 4.052 4 C -0.017 4.017 5 N -0.486 5.486 6 C 0.193 3.807 7 S -0.026 6.026 8 C -0.090 4.090 9 C 0.071 3.929 10 N -0.686 5.686 11 C 0.060 3.940 12 C -0.107 4.107 13 C 0.021 3.979 14 C -0.517 4.517 15 H 0.056 0.944 16 C 0.054 3.946 17 N -0.897 5.897 18 Si 0.892 3.108 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.285 1.285 22 H 0.080 0.920 23 H 0.089 0.911 24 H 0.090 0.910 25 H 0.178 0.822 26 H 0.173 0.827 27 H 0.093 0.907 28 H 0.105 0.895 29 H 0.080 0.920 30 H 0.037 0.963 31 H 0.340 0.660 32 H 0.069 0.931 33 H 0.026 0.974 34 H 0.046 0.954 35 H 0.057 0.943 36 H 0.016 0.984 37 H 0.014 0.986 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.053 27.023 -0.837 30.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.137 5.137 3 C -0.186 4.186 4 C -0.167 4.167 5 N -0.208 5.208 6 C -0.178 4.178 7 S 0.203 5.797 8 C -0.239 4.239 9 C -0.060 4.060 10 N -0.318 5.318 11 C -0.069 4.069 12 C -0.145 4.145 13 C -0.016 4.016 14 C -0.556 4.556 15 H 0.074 0.926 16 C -0.146 4.146 17 N -0.536 5.536 18 Si 0.720 3.280 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.211 1.211 22 H 0.099 0.901 23 H 0.107 0.893 24 H 0.108 0.892 25 H 0.195 0.805 26 H 0.190 0.810 27 H 0.112 0.888 28 H 0.123 0.877 29 H 0.099 0.901 30 H 0.055 0.945 31 H 0.158 0.842 32 H 0.087 0.913 33 H 0.045 0.955 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.035 0.965 37 H 0.032 0.968 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.611 25.903 -0.152 29.261 hybrid contribution 1.063 0.585 -0.930 1.529 sum -12.548 26.487 -1.082 29.329 Atomic orbital electron populations 1.22101 0.76090 1.04918 1.03990 1.45474 1.07406 1.05363 1.55503 1.22834 0.91057 0.92286 1.12465 1.22337 0.96630 0.90944 1.06828 1.70808 1.16963 1.12180 1.20881 1.25112 0.88562 0.94538 1.09564 1.85258 1.12651 0.88223 1.93535 1.23504 0.95205 0.97352 1.07867 1.21632 0.92726 0.90003 1.01628 1.60530 1.14112 1.07222 1.49895 1.22158 0.99820 0.84744 1.00141 1.21632 0.93606 0.98432 1.00867 1.19076 0.97110 0.88299 0.97151 1.21304 0.92801 0.91351 1.50114 0.92577 1.25041 0.96530 0.97631 0.95431 1.69975 1.27261 1.05227 1.51180 0.86535 0.84479 0.79465 0.77518 1.19708 1.21028 1.21081 0.90140 0.89251 0.89170 0.80499 0.80951 0.88788 0.87660 0.90146 0.94530 0.84183 0.91285 0.95537 0.93558 0.92432 0.96528 0.96780 0.93113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.36 11.01 59.85 0.66 1.01 16 2 N -0.45 -4.10 3.20 -124.32 -0.40 -4.49 16 3 C -0.05 -0.42 11.60 -16.28 -0.19 -0.61 16 4 C -0.02 -0.18 11.84 -17.80 -0.21 -0.39 16 5 N -0.49 -6.41 10.60 -13.45 -0.14 -6.55 16 6 C 0.19 2.26 7.96 -88.75 -0.71 1.56 16 7 S -0.03 -0.27 21.63 -107.50 -2.33 -2.60 16 8 C -0.09 -1.04 5.46 37.16 0.20 -0.84 16 9 C 0.07 0.88 5.69 -3.82 -0.02 0.86 16 10 N -0.69 -10.12 6.50 -113.77 -0.74 -10.86 16 11 C 0.06 1.04 5.69 -3.82 -0.02 1.02 16 12 C -0.11 -2.25 5.41 -26.73 -0.14 -2.40 16 13 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 14 C -0.52 -14.94 9.11 -34.44 -0.31 -15.26 16 15 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 16 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 17 N -0.90 -27.34 13.29 55.43 0.74 -26.60 16 18 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 19 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 22 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 23 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 24 H 0.09 0.43 7.73 -51.93 -0.40 0.03 16 25 H 0.18 0.78 8.06 -52.48 -0.42 0.35 16 26 H 0.17 1.33 8.06 -52.49 -0.42 0.91 16 27 H 0.09 1.12 8.14 -51.91 -0.42 0.69 16 28 H 0.10 1.35 8.14 -51.92 -0.42 0.92 16 29 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.34 4.71 8.73 -39.30 -0.34 4.36 16 32 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 33 H 0.03 0.46 8.14 -51.92 -0.42 0.03 16 34 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 336.62 15.07 5.07 5.07 Total: -1.00 -33.43 336.62 -10.01 -43.44 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -6.20 Total: -1.25 kcal Atomic # 6 Polarization: -12.16 SS G_CDS: -0.98 Total: -13.14 kcal Atomic # 7 Polarization: -47.97 SS G_CDS: -0.54 Total: -48.51 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Atomic # 16 Polarization: -0.27 SS G_CDS: -2.33 Total: -2.60 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.43 -10.01 -43.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309557770.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.403 kcal (2) G-P(sol) polarization free energy of solvation -33.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds