Wall clock time and date at job start Mon Mar 30 2020 04:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.37682 * 126.50469 * 2 1 4 4 C 1.34387 * 106.95849 * 180.23449 * 3 2 1 5 5 N 1.34365 * 108.34333 * 359.76131 * 4 3 2 6 6 C 1.31265 * 109.30535 * 359.97438 * 5 4 3 7 7 S 1.76199 * 125.80152 * 179.97438 * 6 5 4 8 8 C 1.81002 * 100.00182 * 0.02902 * 7 6 5 9 9 C 1.52998 * 109.47085 * 180.02562 * 8 7 6 10 10 N 1.46906 * 109.46618 * 179.97438 * 9 8 7 11 11 C 1.46903 * 110.99699 * 179.97438 * 10 9 8 12 12 C 1.52996 * 109.47245 * 180.02562 * 11 10 9 13 13 C 1.52999 * 109.47169 * 180.02562 * 12 11 10 14 14 C 1.50704 * 109.46726 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00487 * 359.97438 * 14 13 12 16 16 C 1.37884 * 119.99597 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00203 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99894 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47238 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47251 * 119.99700 * 18 16 14 21 21 H 1.48503 * 109.46995 * 239.99796 * 18 16 14 22 22 H 1.09003 * 109.46928 * 270.17593 * 1 2 3 23 23 H 1.09004 * 109.46629 * 30.17160 * 1 2 3 24 24 H 1.08994 * 109.47492 * 150.17799 * 1 2 3 25 25 H 1.08004 * 126.51970 * 359.95255 * 3 2 1 26 26 H 1.07998 * 125.82949 * 179.73698 * 4 3 2 27 27 H 1.09005 * 109.46889 * 299.99975 * 8 7 6 28 28 H 1.09000 * 109.47231 * 59.99947 * 8 7 6 29 29 H 1.09001 * 109.47131 * 299.99123 * 9 8 7 30 30 H 1.08996 * 109.47558 * 60.00200 * 9 8 7 31 31 H 1.00893 * 111.00108 * 303.95220 * 10 9 8 32 32 H 1.09000 * 109.47297 * 300.00334 * 11 10 9 33 33 H 1.09007 * 109.46995 * 60.00151 * 11 10 9 34 34 H 1.09000 * 109.47215 * 300.00346 * 12 11 10 35 35 H 1.08999 * 109.47179 * 59.99860 * 12 11 10 36 36 H 1.08996 * 109.47238 * 299.99633 * 13 12 11 37 37 H 1.08999 * 109.47005 * 60.00535 * 13 12 11 38 38 H 0.97000 * 120.00547 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2841 1.1067 0.0000 4 6 3.5505 0.6571 -0.0053 5 7 3.5223 -0.6863 -0.0031 6 6 2.2747 -1.0941 0.0039 7 16 1.7390 -2.7727 0.0085 8 6 3.3416 -3.6141 0.0018 9 6 3.1226 -5.1283 0.0041 10 7 4.4233 -5.8111 -0.0020 11 6 4.2520 -7.2701 0.0006 12 6 5.6251 -7.9449 -0.0052 13 6 5.4466 -9.4645 -0.0031 14 6 6.7992 -10.1291 -0.0094 15 1 7.6963 -9.5278 -0.0148 16 6 6.8912 -11.5048 -0.0094 17 7 5.7988 -12.2370 -0.0034 18 14 8.5677 -12.3286 -0.0165 19 1 9.6295 -11.2904 -0.0221 20 1 8.7086 -13.1748 1.1957 21 1 8.6979 -13.1757 -1.2293 22 1 -0.3633 0.0032 1.0277 23 1 -0.3633 0.8885 -0.5165 24 1 -0.3634 -0.8915 -0.5110 25 1 1.9688 2.1397 -0.0007 26 1 4.4392 1.2707 -0.0107 27 1 3.8979 -3.3291 -0.8912 28 1 3.9064 -3.3270 0.8888 29 1 2.5663 -5.4137 0.8969 30 1 2.5580 -5.4152 -0.8831 31 1 4.9841 -5.5140 -0.7863 32 1 3.7039 -7.5700 0.8938 33 1 3.6946 -7.5721 -0.8862 34 1 6.1736 -7.6450 -0.8981 35 1 6.1820 -7.6429 0.8818 36 1 4.8980 -9.7647 0.8896 37 1 4.8899 -9.7661 -0.8904 38 1 5.8635 -13.2048 -0.0030 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309557770.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:15 Heat of formation + Delta-G solvation = 23.761493 kcal Electronic energy + Delta-G solvation = -16920.848337 eV Core-core repulsion = 14117.076082 eV Total energy + Delta-G solvation = -2803.772255 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.126 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.75311 -38.06760 -35.70348 -34.98229 -33.69864 -31.09845 -30.54082 -27.88247 -27.69865 -24.56195 -23.48085 -22.59713 -22.18315 -21.69896 -18.75004 -18.47232 -17.24184 -17.00155 -16.74628 -16.54250 -15.92121 -15.63365 -15.42477 -15.19782 -14.57040 -14.29799 -14.06442 -14.01035 -13.82595 -13.52445 -13.32319 -12.99567 -12.77868 -12.52575 -12.41204 -12.20219 -11.72281 -11.52099 -11.36735 -11.13245 -11.08420 -10.70191 -10.55118 -10.37866 -9.44895 -8.46036 -8.19724 -6.30394 0.15525 0.88766 1.03940 1.40549 1.40862 1.54619 1.97825 2.01390 2.41679 3.13343 3.28273 3.76331 3.86608 3.90262 3.94585 4.26136 4.34035 4.35879 4.43506 4.45298 4.62412 4.64864 4.71943 4.73841 4.85027 5.00562 5.10547 5.14906 5.25125 5.53034 5.69117 5.76069 5.86851 5.95246 5.96973 6.27506 6.40266 6.86170 6.86691 7.38672 8.92386 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.057252 B = 0.002297 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.948229 B =12188.592805 C =12633.848706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.451 5.451 3 C -0.032 4.032 4 C -0.051 4.051 5 N -0.525 5.525 6 C 0.160 3.840 7 S -0.006 6.006 8 C -0.083 4.083 9 C 0.077 3.923 10 N -0.689 5.689 11 C 0.073 3.927 12 C -0.094 4.094 13 C 0.024 3.976 14 C -0.542 4.542 15 H 0.059 0.941 16 C -0.003 4.003 17 N -0.933 5.933 18 Si 0.966 3.034 19 H -0.263 1.263 20 H -0.278 1.278 21 H -0.277 1.277 22 H 0.092 0.908 23 H 0.118 0.882 24 H 0.089 0.911 25 H 0.219 0.781 26 H 0.188 0.812 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.046 0.954 31 H 0.347 0.653 32 H 0.065 0.935 33 H 0.029 0.971 34 H 0.051 0.949 35 H 0.052 0.948 36 H -0.007 1.007 37 H -0.007 1.007 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.332 28.700 -1.036 31.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.136 5.136 3 C -0.168 4.168 4 C -0.201 4.201 5 N -0.248 5.248 6 C -0.210 4.210 7 S 0.223 5.777 8 C -0.232 4.232 9 C -0.054 4.054 10 N -0.322 5.322 11 C -0.056 4.056 12 C -0.132 4.132 13 C -0.013 4.013 14 C -0.580 4.580 15 H 0.077 0.923 16 C -0.201 4.201 17 N -0.574 5.574 18 Si 0.791 3.209 19 H -0.187 1.187 20 H -0.203 1.203 21 H -0.203 1.203 22 H 0.110 0.890 23 H 0.136 0.864 24 H 0.108 0.892 25 H 0.235 0.765 26 H 0.205 0.795 27 H 0.107 0.893 28 H 0.109 0.891 29 H 0.100 0.900 30 H 0.064 0.936 31 H 0.165 0.835 32 H 0.084 0.916 33 H 0.047 0.953 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.011 0.989 37 H 0.011 0.989 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.912 27.600 -0.353 30.910 hybrid contribution 1.082 0.172 -0.864 1.395 sum -12.830 27.772 -1.217 30.617 Atomic orbital electron populations 1.22418 0.73781 1.06358 1.05227 1.45788 1.08863 1.04781 1.54193 1.23483 0.90233 0.93641 1.09395 1.22793 0.98506 0.90369 1.08400 1.70712 1.18282 1.13948 1.21868 1.25216 0.88987 0.95430 1.11381 1.85018 1.10995 0.87945 1.93735 1.23287 0.96160 0.96886 1.06900 1.21604 0.91477 0.90206 1.02118 1.60420 1.15713 1.05580 1.50452 1.21854 0.97343 0.86273 1.00145 1.21384 0.95861 0.95096 1.00831 1.18982 0.95622 0.91845 0.94895 1.21737 0.93864 0.92126 1.50284 0.92294 1.26004 1.00840 0.98413 0.94794 1.70099 1.29739 1.05721 1.51833 0.85381 0.79359 0.78382 0.77814 1.18681 1.20322 1.20277 0.88974 0.86400 0.89226 0.76457 0.79513 0.89264 0.89111 0.89983 0.93581 0.83458 0.91614 0.95309 0.93013 0.92901 0.98893 0.98897 0.92762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.47 11.01 127.77 1.41 1.87 16 2 N -0.45 -7.32 3.20 -547.24 -1.75 -9.08 16 3 C -0.03 -0.45 11.60 82.89 0.96 0.51 16 4 C -0.05 -1.02 11.84 83.42 0.99 -0.03 16 5 N -0.52 -13.81 10.60 -196.47 -2.08 -15.90 16 6 C 0.16 3.66 7.96 179.70 1.43 5.09 16 7 S -0.01 -0.12 21.63 -56.49 -1.22 -1.35 16 8 C -0.08 -1.91 5.46 71.98 0.39 -1.51 16 9 C 0.08 1.83 5.69 86.30 0.49 2.32 16 10 N -0.69 -19.93 6.50 -513.87 -3.34 -23.27 16 11 C 0.07 2.53 5.69 86.30 0.49 3.02 16 12 C -0.09 -3.96 5.41 30.59 0.17 -3.79 16 13 C 0.02 1.31 4.97 29.85 0.15 1.45 16 14 C -0.54 -31.65 9.11 25.60 0.23 -31.42 16 15 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 16 C 0.00 -0.18 5.46 84.66 0.46 0.29 16 17 N -0.93 -57.66 13.29 21.45 0.28 -57.37 16 18 Si 0.97 45.13 29.54 68.60 2.03 47.15 16 19 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 20 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 21 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 22 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 23 H 0.12 0.20 8.14 -2.38 -0.02 0.18 16 24 H 0.09 0.69 7.73 -2.39 -0.02 0.67 16 25 H 0.22 1.03 8.06 -2.91 -0.02 1.00 16 26 H 0.19 2.77 8.06 -2.91 -0.02 2.74 16 27 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.09 2.36 8.14 -2.40 -0.02 2.34 16 29 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.35 9.33 8.73 -89.70 -0.78 8.55 16 32 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.03 0.98 8.14 -2.38 -0.02 0.96 16 34 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 36 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 37 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 38 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -72.66 336.62 1.33 -71.33 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: 0.25 Total: 10.68 kcal Atomic # 6 Polarization: -29.37 SS G_CDS: 7.17 Total: -22.20 kcal Atomic # 7 Polarization: -98.73 SS G_CDS: -6.89 Total: -105.62 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Atomic # 16 Polarization: -0.12 SS G_CDS: -1.22 Total: -1.35 kcal Total: -72.66 1.33 -71.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309557770.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.091 kcal (2) G-P(sol) polarization free energy of solvation -72.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds