Wall clock time and date at job start Mon Mar 30 2020 04:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46498 * 109.47168 * 2 1 4 4 C 1.46498 * 119.99468 * 269.99731 * 3 2 1 5 5 C 1.50706 * 109.47431 * 269.99737 * 4 3 2 6 6 H 1.08001 * 119.99190 * 0.02562 * 5 4 3 7 7 C 1.37869 * 120.00100 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00343 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99843 * 180.02562 * 7 5 4 10 10 H 1.48491 * 109.47325 * 89.99774 * 9 7 5 11 11 H 1.48504 * 109.47129 * 210.00144 * 9 7 5 12 12 H 1.48497 * 109.46968 * 329.99451 * 9 7 5 13 13 C 1.34777 * 120.00385 * 89.99864 * 3 2 1 14 14 O 1.21277 * 120.00285 * 179.97438 * 13 3 2 15 15 C 1.50695 * 119.99735 * 0.02562 * 13 3 2 16 16 C 1.52998 * 109.47180 * 175.41996 * 15 13 3 17 17 C 1.50705 * 112.85009 * 293.95742 * 16 15 13 18 18 O 1.20820 * 120.00191 * 120.61663 * 17 16 15 19 19 O 1.34226 * 120.00046 * 300.62525 * 17 16 15 20 20 C 1.53783 * 113.61733 * 162.65150 * 16 15 13 21 21 C 1.53782 * 87.08187 * 220.01695 * 20 16 15 22 22 C 1.53779 * 113.61362 * 65.15419 * 16 15 13 23 23 H 1.08999 * 109.47226 * 60.00510 * 1 2 3 24 24 H 1.09008 * 109.47489 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47437 * 300.00385 * 1 2 3 26 26 H 1.08997 * 109.46950 * 239.99514 * 2 1 3 27 27 H 1.09005 * 109.46671 * 119.99910 * 2 1 3 28 28 H 1.08994 * 109.47603 * 30.00165 * 4 3 2 29 29 H 1.09008 * 109.46867 * 150.00576 * 4 3 2 30 30 H 0.96996 * 120.00298 * 179.97438 * 8 7 5 31 31 H 1.09007 * 109.47046 * 295.41709 * 15 13 3 32 32 H 1.09003 * 109.47799 * 55.41583 * 15 13 3 33 33 H 0.96696 * 117.00184 * 179.97438 * 19 17 16 34 34 H 1.09000 * 113.61390 * 334.57056 * 20 16 15 35 35 H 1.09000 * 113.61056 * 105.46987 * 20 16 15 36 36 H 1.09001 * 113.61617 * 270.88622 * 21 20 16 37 37 H 1.08998 * 113.61221 * 139.98222 * 21 20 16 38 38 H 1.09001 * 113.61228 * 254.53016 * 22 16 15 39 39 H 1.08992 * 113.61968 * 25.43502 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6858 1.8349 -1.7038 6 1 4.3426 1.2301 -1.0961 7 6 4.1494 2.3902 -2.8775 8 7 3.3494 3.1262 -3.6177 9 14 5.9135 2.0961 -3.4170 10 1 5.9762 0.8756 -4.2604 11 1 6.3930 3.2637 -4.1994 12 1 6.7736 1.9155 -2.2200 13 6 2.2429 2.0166 1.1672 14 8 2.6477 3.1599 1.1671 15 6 1.9923 1.3061 2.4722 16 6 2.4309 2.2014 3.6328 17 6 3.9189 2.4386 3.6590 18 8 4.3528 3.5637 3.5838 19 8 4.7623 1.3998 3.7658 20 6 1.8487 1.7779 4.9917 21 6 1.6585 3.2748 5.2882 22 6 1.5995 3.4882 3.7663 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8933 -0.5139 -0.8899 27 1 1.8932 -0.5139 0.8901 28 1 1.5818 1.6876 -2.0284 29 1 2.0956 3.1410 -1.1385 30 1 3.6757 3.5172 -4.4433 31 1 0.9293 1.0836 2.5665 32 1 2.5614 0.3767 2.4952 33 1 5.7079 1.6015 3.7781 34 1 0.9121 1.2259 4.9126 35 1 2.5735 1.2921 5.6449 36 1 2.5236 3.7397 5.7611 37 1 0.7225 3.5035 5.7977 38 1 2.1233 4.3832 3.4303 39 1 0.5949 3.4040 3.3522 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310118523.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:50 Heat of formation + Delta-G solvation = -111.149688 kcal Electronic energy + Delta-G solvation = -21786.901768 eV Core-core repulsion = 18502.233703 eV Total energy + Delta-G solvation = -3284.668065 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -40.94038 -38.90020 -37.75411 -35.74117 -35.22331 -32.82489 -30.67240 -30.02211 -27.14866 -25.71494 -25.01453 -23.04110 -22.75306 -21.86592 -19.20078 -18.38575 -17.50673 -16.54063 -16.35959 -16.24529 -15.71992 -15.16692 -14.61258 -14.41151 -14.28903 -13.87293 -13.35472 -13.30946 -12.79340 -12.46209 -12.42626 -12.09057 -11.95537 -11.58304 -11.49436 -11.28148 -11.17277 -10.93319 -10.89241 -10.72618 -10.59340 -10.37771 -10.24139 -10.11035 -10.07696 -9.60785 -8.81220 -8.41497 -7.62908 -6.02324 -4.06729 2.50338 3.17520 3.30810 3.37519 3.40753 3.47504 3.87616 4.42068 4.48347 4.50701 4.78028 4.81455 5.15198 5.27260 5.32089 5.35408 5.42777 5.57470 5.65753 5.66296 5.69541 5.79021 5.83082 5.87140 6.03690 6.13609 6.23916 6.29925 6.45221 6.49085 6.75286 7.08869 7.47417 7.57960 7.94346 8.18135 8.26194 8.45210 8.92617 9.12839 9.58319 11.05778 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.019672 B = 0.006215 C = 0.005373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.025651 B = 4504.103632 C = 5209.784830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.105 3.895 3 N -0.598 5.598 4 C 0.247 3.753 5 C -0.524 4.524 6 H 0.055 0.945 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.275 1.275 13 C 0.497 3.503 14 O -0.528 6.528 15 C -0.126 4.126 16 C -0.060 4.060 17 C 0.505 3.495 18 O -0.493 6.493 19 O -0.520 6.520 20 C -0.121 4.121 21 C -0.149 4.149 22 C -0.106 4.106 23 H 0.060 0.940 24 H 0.059 0.941 25 H 0.050 0.950 26 H 0.081 0.919 27 H 0.065 0.935 28 H 0.031 0.969 29 H 0.043 0.957 30 H 0.263 0.737 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.407 0.593 34 H 0.096 0.904 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.601 -7.590 15.815 18.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.019 4.019 3 N -0.330 5.330 4 C 0.128 3.872 5 C -0.563 4.563 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.200 1.200 13 C 0.283 3.717 14 O -0.405 6.405 15 C -0.166 4.166 16 C -0.061 4.061 17 C 0.346 3.654 18 O -0.378 6.378 19 O -0.332 6.332 20 C -0.158 4.158 21 C -0.186 4.186 22 C -0.143 4.143 23 H 0.079 0.921 24 H 0.078 0.922 25 H 0.069 0.931 26 H 0.100 0.900 27 H 0.083 0.917 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.118 0.882 32 H 0.115 0.885 33 H 0.266 0.734 34 H 0.115 0.885 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.110 0.890 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.688 -6.624 15.583 17.862 hybrid contribution 1.653 -0.189 -0.602 1.769 sum -4.035 -6.813 14.981 16.945 Atomic orbital electron populations 1.22220 0.96827 1.01368 1.02280 1.21424 0.93473 0.84332 1.02686 1.48247 1.63834 1.13173 1.07729 1.19249 0.96164 0.93650 0.78169 1.21425 0.96970 1.31754 1.06176 0.92628 1.24926 0.97796 0.94939 0.96441 1.69927 1.35662 1.33475 1.14347 0.86514 0.84792 0.77664 0.78558 1.20632 1.21072 1.19983 1.20273 0.79092 0.87214 0.85105 1.90744 1.45008 1.17687 1.87013 1.21759 1.03393 0.99302 0.92189 1.21263 0.88005 1.00044 0.96799 1.22469 0.89057 0.82208 0.71674 1.90693 1.78437 1.24742 1.43943 1.84467 1.22519 1.40549 1.85645 1.23023 1.01390 0.97470 0.93928 1.22972 1.02342 0.95773 0.97531 1.22835 0.99429 0.97338 0.94679 0.92071 0.92190 0.93104 0.90030 0.91695 0.95107 0.93915 0.92751 0.88161 0.88535 0.73424 0.88549 0.90771 0.90213 0.90825 0.88982 0.89169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.17 10.24 37.16 0.38 -1.79 16 2 C 0.11 1.65 5.96 -4.04 -0.02 1.63 16 3 N -0.60 -12.57 2.46 -175.06 -0.43 -13.00 16 4 C 0.25 6.51 5.16 -5.19 -0.03 6.49 16 5 C -0.52 -15.12 9.39 -34.44 -0.32 -15.44 16 6 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -27.02 13.29 55.43 0.74 -26.28 16 9 Si 0.90 22.31 29.54 -169.99 -5.02 17.29 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 13 C 0.50 10.25 7.32 -10.99 -0.08 10.17 16 14 O -0.53 -13.31 13.91 5.56 0.08 -13.23 16 15 C -0.13 -1.83 3.81 -27.89 -0.11 -1.94 16 16 C -0.06 -0.86 0.70 -154.85 -0.11 -0.96 16 17 C 0.51 8.53 5.99 36.01 0.22 8.75 16 18 O -0.49 -10.08 16.55 -18.94 -0.31 -10.40 16 19 O -0.52 -7.19 13.41 -39.25 -0.53 -7.71 16 20 C -0.12 -1.23 7.22 -25.92 -0.19 -1.41 16 21 C -0.15 -1.64 7.81 -25.92 -0.20 -1.84 16 22 C -0.11 -1.52 5.84 -25.92 -0.15 -1.67 16 23 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 25 H 0.05 0.60 7.36 -51.93 -0.38 0.22 16 26 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 27 H 0.06 0.84 6.32 -51.93 -0.33 0.52 16 28 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 29 H 0.04 1.28 7.42 -51.92 -0.39 0.89 16 30 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.10 1.15 7.27 -51.92 -0.38 0.77 16 32 H 0.10 1.28 7.15 -51.93 -0.37 0.91 16 33 H 0.41 4.09 9.10 45.56 0.41 4.50 16 34 H 0.10 0.76 8.04 -51.93 -0.42 0.35 16 35 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 36 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.09 1.64 7.25 -51.93 -0.38 1.27 16 39 H 0.09 1.18 8.10 -51.93 -0.42 0.76 16 LS Contribution 326.29 15.07 4.92 4.92 Total: -1.00 -36.21 326.29 -6.41 -42.62 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -5.14 Total: 2.14 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: -0.71 Total: 3.65 kcal Atomic # 7 Polarization: -39.58 SS G_CDS: 0.31 Total: -39.28 kcal Atomic # 8 Polarization: -30.58 SS G_CDS: -0.76 Total: -31.34 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -36.21 -6.41 -42.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310118523.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.534 kcal (2) G-P(sol) polarization free energy of solvation -36.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds