Wall clock time and date at job start Mon Mar 30 2020 04:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46498 * 109.47168 * 2 1 4 4 C 1.46498 * 119.99468 * 269.99731 * 3 2 1 5 5 C 1.50706 * 109.47431 * 269.99737 * 4 3 2 6 6 H 1.08001 * 119.99190 * 0.02562 * 5 4 3 7 7 C 1.37869 * 120.00100 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00343 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99843 * 180.02562 * 7 5 4 10 10 H 1.48491 * 109.47325 * 89.99774 * 9 7 5 11 11 H 1.48504 * 109.47129 * 210.00144 * 9 7 5 12 12 H 1.48497 * 109.46968 * 329.99451 * 9 7 5 13 13 C 1.34777 * 120.00385 * 89.99864 * 3 2 1 14 14 O 1.21277 * 120.00285 * 179.97438 * 13 3 2 15 15 C 1.50695 * 119.99735 * 0.02562 * 13 3 2 16 16 C 1.52998 * 109.47180 * 175.41996 * 15 13 3 17 17 C 1.50705 * 112.85009 * 293.95742 * 16 15 13 18 18 O 1.20820 * 120.00191 * 120.61663 * 17 16 15 19 19 O 1.34226 * 120.00046 * 300.62525 * 17 16 15 20 20 C 1.53783 * 113.61733 * 162.65150 * 16 15 13 21 21 C 1.53782 * 87.08187 * 220.01695 * 20 16 15 22 22 C 1.53779 * 113.61362 * 65.15419 * 16 15 13 23 23 H 1.08999 * 109.47226 * 60.00510 * 1 2 3 24 24 H 1.09008 * 109.47489 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47437 * 300.00385 * 1 2 3 26 26 H 1.08997 * 109.46950 * 239.99514 * 2 1 3 27 27 H 1.09005 * 109.46671 * 119.99910 * 2 1 3 28 28 H 1.08994 * 109.47603 * 30.00165 * 4 3 2 29 29 H 1.09008 * 109.46867 * 150.00576 * 4 3 2 30 30 H 0.96996 * 120.00298 * 179.97438 * 8 7 5 31 31 H 1.09007 * 109.47046 * 295.41709 * 15 13 3 32 32 H 1.09003 * 109.47799 * 55.41583 * 15 13 3 33 33 H 0.96696 * 117.00184 * 179.97438 * 19 17 16 34 34 H 1.09000 * 113.61390 * 334.57056 * 20 16 15 35 35 H 1.09000 * 113.61056 * 105.46987 * 20 16 15 36 36 H 1.09001 * 113.61617 * 270.88622 * 21 20 16 37 37 H 1.08998 * 113.61221 * 139.98222 * 21 20 16 38 38 H 1.09001 * 113.61228 * 254.53016 * 22 16 15 39 39 H 1.08992 * 113.61968 * 25.43502 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6858 1.8349 -1.7038 6 1 4.3426 1.2301 -1.0961 7 6 4.1494 2.3902 -2.8775 8 7 3.3494 3.1262 -3.6177 9 14 5.9135 2.0961 -3.4170 10 1 5.9762 0.8756 -4.2604 11 1 6.3930 3.2637 -4.1994 12 1 6.7736 1.9155 -2.2200 13 6 2.2429 2.0166 1.1672 14 8 2.6477 3.1599 1.1671 15 6 1.9923 1.3061 2.4722 16 6 2.4309 2.2014 3.6328 17 6 3.9189 2.4386 3.6590 18 8 4.3528 3.5637 3.5838 19 8 4.7623 1.3998 3.7658 20 6 1.8487 1.7779 4.9917 21 6 1.6585 3.2748 5.2882 22 6 1.5995 3.4882 3.7663 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8933 -0.5139 -0.8899 27 1 1.8932 -0.5139 0.8901 28 1 1.5818 1.6876 -2.0284 29 1 2.0956 3.1410 -1.1385 30 1 3.6757 3.5172 -4.4433 31 1 0.9293 1.0836 2.5665 32 1 2.5614 0.3767 2.4952 33 1 5.7079 1.6015 3.7781 34 1 0.9121 1.2259 4.9126 35 1 2.5735 1.2921 5.6449 36 1 2.5236 3.7397 5.7611 37 1 0.7225 3.5035 5.7977 38 1 2.1233 4.3832 3.4303 39 1 0.5949 3.4040 3.3522 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310118523.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:49 Heat of formation + Delta-G solvation = -136.981772 kcal Electronic energy + Delta-G solvation = -21788.021931 eV Core-core repulsion = 18502.233703 eV Total energy + Delta-G solvation = -3285.788228 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.14806 -40.44049 -38.90322 -37.02173 -36.87504 -34.94761 -32.07486 -31.36997 -29.00298 -26.75850 -26.32671 -24.80160 -24.05787 -23.09238 -20.28160 -19.92424 -18.80560 -18.62529 -17.86915 -17.58019 -17.03726 -16.76163 -16.21375 -15.93513 -15.44308 -15.13600 -14.68142 -14.62015 -14.43057 -13.90726 -13.62123 -13.37398 -13.29070 -13.16884 -13.01677 -12.74016 -12.60789 -12.53369 -12.49939 -12.17317 -11.92025 -11.84949 -11.73844 -11.43207 -11.37222 -11.19490 -10.66762 -10.45528 -9.39997 -8.24959 -6.39815 1.24066 1.31467 1.35231 1.44889 1.88784 2.08579 2.29627 2.44383 3.04034 3.35108 3.51579 3.72059 3.88895 3.93403 4.15706 4.37404 4.37759 4.49334 4.54755 4.71967 4.79587 4.80657 4.87696 4.99145 5.03513 5.07235 5.08375 5.17162 5.20551 5.23740 5.43852 5.46584 5.56835 5.62155 5.87619 6.05425 6.68336 6.84327 7.00248 7.26790 7.54260 8.81809 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.019672 B = 0.006215 C = 0.005373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.025651 B = 4504.103632 C = 5209.784830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.097 3.903 3 N -0.605 5.605 4 C 0.264 3.736 5 C -0.541 4.541 6 H 0.050 0.950 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.966 3.034 10 H -0.259 1.259 11 H -0.281 1.281 12 H -0.276 1.276 13 C 0.484 3.516 14 O -0.587 6.587 15 C -0.110 4.110 16 C -0.076 4.076 17 C 0.499 3.501 18 O -0.545 6.545 19 O -0.510 6.510 20 C -0.094 4.094 21 C -0.140 4.140 22 C -0.118 4.118 23 H 0.033 0.967 24 H 0.096 0.904 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.104 0.896 28 H 0.021 0.979 29 H -0.008 1.008 30 H 0.267 0.733 31 H 0.145 0.855 32 H 0.120 0.880 33 H 0.422 0.578 34 H 0.135 0.865 35 H 0.087 0.913 36 H 0.063 0.937 37 H 0.102 0.898 38 H 0.040 0.960 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.339 -10.795 17.740 21.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.025 4.025 3 N -0.336 5.336 4 C 0.142 3.858 5 C -0.580 4.580 6 H 0.068 0.932 7 C -0.193 4.193 8 N -0.568 5.568 9 Si 0.790 3.210 10 H -0.184 1.184 11 H -0.207 1.207 12 H -0.201 1.201 13 C 0.273 3.727 14 O -0.467 6.467 15 C -0.150 4.150 16 C -0.077 4.077 17 C 0.342 3.658 18 O -0.434 6.434 19 O -0.323 6.323 20 C -0.130 4.130 21 C -0.177 4.177 22 C -0.155 4.155 23 H 0.053 0.947 24 H 0.115 0.885 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.123 0.877 28 H 0.039 0.961 29 H 0.011 0.989 30 H 0.076 0.924 31 H 0.163 0.837 32 H 0.138 0.862 33 H 0.282 0.718 34 H 0.153 0.847 35 H 0.106 0.894 36 H 0.082 0.918 37 H 0.121 0.879 38 H 0.059 0.941 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -6.440 -9.907 17.528 21.139 hybrid contribution 1.891 0.830 -1.226 2.401 sum -4.549 -9.077 16.302 19.205 Atomic orbital electron populations 1.22157 0.94290 1.03590 1.01814 1.21788 0.95541 0.81233 1.03934 1.48293 1.64057 1.15143 1.06113 1.18635 0.95023 0.91385 0.80767 1.21703 0.98030 1.31819 1.06409 0.93215 1.25861 1.02365 0.94518 0.96523 1.70049 1.37747 1.34232 1.14814 0.85448 0.79038 0.78370 0.78155 1.18351 1.20664 1.20113 1.21469 0.77544 0.86818 0.86823 1.90731 1.47428 1.20582 1.88000 1.21805 1.06466 0.98921 0.87766 1.21529 0.86294 1.00428 0.99452 1.23191 0.90591 0.81834 0.70203 1.90673 1.79492 1.26819 1.46409 1.84429 1.23644 1.39323 1.84891 1.23052 1.02888 0.96851 0.90255 1.22918 1.03166 0.96781 0.94843 1.22885 0.99434 0.95570 0.97647 0.94734 0.88513 0.91444 0.91473 0.87748 0.96118 0.98948 0.92432 0.83735 0.86210 0.71777 0.84665 0.89423 0.91792 0.87947 0.94107 0.87904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.64 10.24 71.98 0.74 -2.91 16 2 C 0.10 2.84 5.96 86.38 0.51 3.35 16 3 N -0.60 -25.55 2.46 -826.16 -2.03 -27.57 16 4 C 0.26 14.60 5.16 85.64 0.44 15.04 16 5 C -0.54 -32.20 9.39 25.60 0.24 -31.96 16 6 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 7 C 0.01 0.36 5.46 84.65 0.46 0.83 16 8 N -0.93 -57.83 13.29 21.44 0.28 -57.54 16 9 Si 0.97 46.38 29.54 68.60 2.03 48.41 16 10 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 11 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 12 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 13 C 0.48 19.96 7.32 87.66 0.64 20.60 16 14 O -0.59 -31.14 13.91 -3.02 -0.04 -31.18 16 15 C -0.11 -2.83 3.81 29.85 0.11 -2.72 16 16 C -0.08 -2.02 0.70 -52.40 -0.04 -2.05 16 17 C 0.50 16.74 5.99 71.24 0.43 17.17 16 18 O -0.54 -23.44 16.55 22.17 0.37 -23.07 16 19 O -0.51 -13.34 13.41 -51.38 -0.69 -14.02 16 20 C -0.09 -1.47 7.22 31.12 0.22 -1.24 16 21 C -0.14 -2.75 7.81 31.12 0.24 -2.50 16 22 C -0.12 -3.35 5.84 31.12 0.18 -3.17 16 23 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.10 1.52 8.14 -2.38 -0.02 1.50 16 25 H 0.07 1.31 7.36 -2.39 -0.02 1.30 16 26 H 0.07 2.15 8.07 -2.39 -0.02 2.13 16 27 H 0.10 2.23 6.32 -2.38 -0.02 2.22 16 28 H 0.02 1.17 8.07 -2.39 -0.02 1.15 16 29 H -0.01 -0.49 7.42 -2.38 -0.02 -0.51 16 30 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 31 H 0.14 2.46 7.27 -2.38 -0.02 2.44 16 32 H 0.12 2.57 7.15 -2.39 -0.02 2.56 16 33 H 0.42 8.12 9.10 -74.06 -0.67 7.45 16 34 H 0.14 1.16 8.04 -2.39 -0.02 1.14 16 35 H 0.09 1.21 8.10 -2.39 -0.02 1.19 16 36 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.04 1.57 7.25 -2.39 -0.02 1.55 16 39 H 0.10 2.56 8.10 -2.39 -0.02 2.54 16 Total: -1.00 -86.71 326.29 4.48 -82.23 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: 0.38 Total: 12.31 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: 4.19 Total: 10.45 kcal Atomic # 7 Polarization: -83.37 SS G_CDS: -1.74 Total: -85.12 kcal Atomic # 8 Polarization: -67.91 SS G_CDS: -0.36 Total: -68.27 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -86.71 4.48 -82.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310118523.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.757 kcal (2) G-P(sol) polarization free energy of solvation -86.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds