Wall clock time and date at job start Mon Mar 30 2020 04:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46662 * 2 1 4 4 C 1.50700 * 109.47258 * 240.00157 * 2 1 3 5 5 H 1.08001 * 119.99691 * 273.69524 * 4 2 1 6 6 C 1.37879 * 120.00092 * 93.69587 * 4 2 1 7 7 N 1.31508 * 119.99836 * 181.19684 * 6 4 2 8 8 Si 1.86804 * 119.99822 * 1.19446 * 6 4 2 9 9 H 1.48503 * 109.46792 * 89.90177 * 8 6 4 10 10 H 1.48500 * 109.47014 * 209.90359 * 8 6 4 11 11 H 1.48501 * 109.47064 * 329.90110 * 8 6 4 12 12 N 1.46498 * 109.47118 * 119.99873 * 2 1 3 13 13 C 1.46502 * 119.99778 * 60.00539 * 12 2 1 14 14 C 1.34770 * 119.99923 * 240.00329 * 12 2 1 15 15 O 1.21280 * 120.00261 * 359.97438 * 14 12 2 16 16 C 1.50706 * 119.99949 * 180.02562 * 14 12 2 17 17 C 1.53002 * 109.47470 * 178.10159 * 16 14 12 18 18 C 1.50700 * 112.84368 * 293.93703 * 17 16 14 19 19 O 1.20834 * 119.99623 * 115.49133 * 18 17 16 20 20 O 1.34228 * 120.00186 * 295.48512 * 18 17 16 21 21 C 1.53771 * 113.61629 * 162.62934 * 17 16 14 22 22 C 1.53780 * 87.08254 * 220.01585 * 21 17 16 23 23 C 1.53779 * 113.61256 * 65.12891 * 17 16 14 24 24 H 1.08992 * 109.47179 * 294.72614 * 1 2 3 25 25 H 1.08995 * 109.47068 * 54.73218 * 1 2 3 26 26 H 1.09006 * 109.46715 * 174.72827 * 1 2 3 27 27 H 0.97002 * 119.99983 * 179.97438 * 7 6 4 28 28 H 1.09004 * 109.46710 * 269.99861 * 13 12 2 29 29 H 1.08993 * 109.47267 * 29.99352 * 13 12 2 30 30 H 1.08998 * 109.46897 * 150.00365 * 13 12 2 31 31 H 1.08993 * 109.47165 * 58.09856 * 16 14 12 32 32 H 1.08999 * 109.47099 * 298.09965 * 16 14 12 33 33 H 0.96700 * 116.99717 * 180.02562 * 20 18 17 34 34 H 1.08997 * 113.61634 * 334.56858 * 21 17 16 35 35 H 1.09008 * 113.61436 * 105.47206 * 21 17 16 36 36 H 1.08994 * 113.61958 * 270.88380 * 22 21 17 37 37 H 1.09003 * 113.61559 * 139.98074 * 22 21 17 38 38 H 1.08997 * 113.61527 * 254.53186 * 23 17 16 39 39 H 1.09000 * 113.61705 * 25.44123 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.1556 -1.7833 -1.2221 6 6 2.3348 0.0094 -2.3669 7 7 2.7507 -0.6129 -3.4482 8 14 2.1536 1.8687 -2.3707 9 1 3.4294 2.4912 -1.9346 10 1 1.8206 2.3307 -3.7421 11 1 1.0667 2.2619 -1.4383 12 7 2.0184 -0.6906 1.1962 13 6 1.6645 -2.0932 1.4279 14 6 2.7931 -0.0356 2.0833 15 8 3.0865 1.1254 1.8912 16 6 3.2960 -0.7461 3.3135 17 6 4.1845 0.2011 4.1224 18 6 5.4566 0.5677 3.4023 19 8 5.6551 1.7129 3.0719 20 8 6.3690 -0.3777 3.1283 21 6 4.4052 -0.2515 5.5753 22 6 4.2674 1.2272 5.9741 23 6 3.4309 1.4122 4.6970 24 1 -0.3633 0.4298 0.9334 25 1 -0.3633 0.5933 -0.8390 26 1 -0.3633 -1.0234 -0.0944 27 1 2.9631 -0.1066 -4.2478 28 1 0.7376 -2.1444 1.9992 29 1 1.5296 -2.5968 0.4708 30 1 2.4630 -2.5818 1.9864 31 1 3.8736 -1.6215 3.0169 32 1 2.4489 -1.0595 3.9238 33 1 7.1693 -0.0944 2.6652 34 1 3.6063 -0.8843 5.9617 35 1 5.3981 -0.6624 5.7585 36 1 5.2109 1.7728 5.9609 37 1 3.7014 1.3808 6.8929 38 1 3.6371 2.3444 4.1712 39 1 2.3655 1.2343 4.8434 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310406961.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:50 Heat of formation + Delta-G solvation = -105.483236 kcal Electronic energy + Delta-G solvation = -21917.957641 eV Core-core repulsion = 18633.535292 eV Total energy + Delta-G solvation = -3284.422349 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.98409 -39.00470 -37.83682 -35.77851 -35.35912 -32.75807 -31.18179 -29.59267 -26.19979 -25.79897 -25.32144 -25.01150 -22.50264 -20.88193 -19.23036 -18.31922 -17.54752 -17.22100 -16.38537 -16.24419 -15.65231 -15.26614 -14.84669 -14.47080 -14.21891 -13.85921 -13.15709 -12.94306 -12.54851 -12.50936 -12.45815 -12.30958 -11.90612 -11.84888 -11.66910 -11.32475 -11.30644 -11.06988 -10.97768 -10.67492 -10.48914 -10.41066 -10.32815 -10.12156 -9.77215 -9.26172 -8.94214 -8.62047 -7.65637 -6.16577 -4.18801 2.46800 3.13265 3.30522 3.33363 3.39957 3.46905 3.77484 4.38326 4.40257 4.45508 4.72505 4.75614 5.10461 5.22086 5.30694 5.39818 5.53753 5.60784 5.63800 5.75002 5.76550 5.82206 5.95106 6.07639 6.22362 6.27898 6.34799 6.37678 6.40031 6.58841 6.72001 6.93924 7.08342 7.49347 7.64719 8.14171 8.15336 8.50699 8.84044 8.95834 9.46283 10.95310 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022999 B = 0.006239 C = 0.005839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.166587 B = 4486.831135 C = 4794.227805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.223 3.777 3 H 0.064 0.936 4 C -0.525 4.525 5 H 0.078 0.922 6 C 0.079 3.921 7 N -0.893 5.893 8 Si 0.874 3.126 9 H -0.272 1.272 10 H -0.287 1.287 11 H -0.262 1.262 12 N -0.589 5.589 13 C 0.081 3.919 14 C 0.495 3.505 15 O -0.541 6.541 16 C -0.124 4.124 17 C -0.059 4.059 18 C 0.504 3.496 19 O -0.491 6.491 20 O -0.519 6.519 21 C -0.121 4.121 22 C -0.149 4.149 23 C -0.107 4.107 24 H 0.025 0.975 25 H 0.054 0.946 26 H 0.049 0.951 27 H 0.266 0.734 28 H 0.043 0.957 29 H 0.081 0.919 30 H 0.057 0.943 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.408 0.592 34 H 0.096 0.904 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.091 0.909 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.402 -2.574 17.964 18.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.122 3.878 3 H 0.082 0.918 4 C -0.563 4.563 5 H 0.096 0.904 6 C -0.124 4.124 7 N -0.530 5.530 8 Si 0.700 3.300 9 H -0.198 1.198 10 H -0.213 1.213 11 H -0.186 1.186 12 N -0.321 5.321 13 C -0.063 4.063 14 C 0.282 3.718 15 O -0.419 6.419 16 C -0.164 4.164 17 C -0.061 4.061 18 C 0.344 3.656 19 O -0.376 6.376 20 O -0.332 6.332 21 C -0.158 4.158 22 C -0.186 4.186 23 C -0.145 4.145 24 H 0.044 0.956 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.100 0.900 30 H 0.075 0.925 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.266 0.734 34 H 0.115 0.885 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.092 0.908 38 H 0.109 0.891 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.295 -1.734 17.744 17.876 hybrid contribution 0.474 0.866 -0.680 1.198 sum 1.769 -0.868 17.065 17.178 Atomic orbital electron populations 1.22224 0.98427 1.00802 0.99048 1.19284 0.90667 0.94979 0.82865 0.91822 1.21124 1.44826 0.95853 0.94536 0.90417 1.24941 0.93664 0.98442 0.95377 1.69885 1.44348 1.36156 1.02584 0.86909 0.79887 0.86093 0.77065 1.19791 1.21310 1.18609 1.48265 1.49254 1.11626 1.22910 1.21647 0.98854 0.83181 1.02574 1.20428 0.79593 0.87399 0.84402 1.90726 1.57742 1.16833 1.76647 1.21715 0.99929 0.98875 0.95912 1.21255 0.91003 0.99455 0.94376 1.22469 0.83905 0.82914 0.76306 1.90701 1.76779 1.21627 1.48507 1.84473 1.32343 1.43561 1.72774 1.23029 1.03134 0.97473 0.92212 1.22966 1.00964 0.96080 0.98613 1.22853 0.98542 0.98348 0.94714 0.95558 0.92707 0.93201 0.92424 0.93831 0.89992 0.92465 0.88230 0.87982 0.73364 0.88544 0.90608 0.90273 0.90783 0.89074 0.89142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.09 9.01 37.16 0.33 -2.76 16 2 C 0.22 5.40 2.19 -69.08 -0.15 5.25 16 3 H 0.06 1.72 4.20 -51.93 -0.22 1.50 16 4 C -0.53 -14.52 8.73 -34.44 -0.30 -14.82 16 5 H 0.08 2.26 6.82 -52.49 -0.36 1.90 16 6 C 0.08 2.30 5.47 -17.82 -0.10 2.21 16 7 N -0.89 -27.08 13.96 55.43 0.77 -26.31 16 8 Si 0.87 22.65 26.68 -169.99 -4.54 18.11 16 9 H -0.27 -7.34 7.11 56.52 0.40 -6.94 16 10 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 11 H -0.26 -6.53 6.30 56.52 0.36 -6.17 16 12 N -0.59 -12.10 2.75 -175.26 -0.48 -12.58 16 13 C 0.08 1.29 9.42 59.85 0.56 1.85 16 14 C 0.50 9.88 7.33 -10.99 -0.08 9.80 16 15 O -0.54 -13.01 13.45 2.08 0.03 -12.98 16 16 C -0.12 -1.75 3.73 -27.88 -0.10 -1.85 16 17 C -0.06 -0.82 0.70 -154.85 -0.11 -0.93 16 18 C 0.50 8.30 5.99 36.01 0.22 8.52 16 19 O -0.49 -9.88 16.30 -21.50 -0.35 -10.24 16 20 O -0.52 -7.01 13.42 -39.25 -0.53 -7.53 16 21 C -0.12 -1.19 7.22 -25.92 -0.19 -1.37 16 22 C -0.15 -1.56 7.81 -25.92 -0.20 -1.76 16 23 C -0.11 -1.47 5.92 -25.92 -0.15 -1.62 16 24 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.05 1.18 7.38 -51.93 -0.38 0.80 16 26 H 0.05 0.98 7.85 -51.93 -0.41 0.57 16 27 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 28 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.08 1.44 6.56 -51.93 -0.34 1.09 16 30 H 0.06 0.74 6.39 -51.93 -0.33 0.41 16 31 H 0.10 1.30 7.30 -51.93 -0.38 0.92 16 32 H 0.10 1.10 8.05 -51.93 -0.42 0.68 16 33 H 0.41 3.97 9.10 45.56 0.41 4.39 16 34 H 0.10 0.73 8.04 -51.93 -0.42 0.31 16 35 H 0.08 0.70 8.10 -51.92 -0.42 0.28 16 36 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.09 1.55 7.27 -51.93 -0.38 1.17 16 39 H 0.09 1.11 8.10 -51.93 -0.42 0.69 16 LS Contribution 316.60 15.07 4.77 4.77 Total: -1.00 -35.78 316.60 -5.52 -41.30 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -4.93 Total: 2.95 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: -0.27 Total: 2.50 kcal Atomic # 7 Polarization: -39.18 SS G_CDS: 0.29 Total: -38.89 kcal Atomic # 8 Polarization: -29.90 SS G_CDS: -0.85 Total: -30.75 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -4.54 Total: 18.11 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -35.78 -5.52 -41.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310406961.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.178 kcal (2) G-P(sol) polarization free energy of solvation -35.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds