Wall clock time and date at job start Mon Mar 30 2020 04:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46662 * 2 1 4 4 C 1.50700 * 109.47258 * 240.00157 * 2 1 3 5 5 H 1.08001 * 119.99691 * 273.69524 * 4 2 1 6 6 C 1.37879 * 120.00092 * 93.69587 * 4 2 1 7 7 N 1.31508 * 119.99836 * 181.19684 * 6 4 2 8 8 Si 1.86804 * 119.99822 * 1.19446 * 6 4 2 9 9 H 1.48503 * 109.46792 * 89.90177 * 8 6 4 10 10 H 1.48500 * 109.47014 * 209.90359 * 8 6 4 11 11 H 1.48501 * 109.47064 * 329.90110 * 8 6 4 12 12 N 1.46498 * 109.47118 * 119.99873 * 2 1 3 13 13 C 1.46502 * 119.99778 * 60.00539 * 12 2 1 14 14 C 1.34770 * 119.99923 * 240.00329 * 12 2 1 15 15 O 1.21280 * 120.00261 * 359.97438 * 14 12 2 16 16 C 1.50706 * 119.99949 * 180.02562 * 14 12 2 17 17 C 1.53002 * 109.47470 * 178.10159 * 16 14 12 18 18 C 1.50700 * 112.84368 * 293.93703 * 17 16 14 19 19 O 1.20834 * 119.99623 * 115.49133 * 18 17 16 20 20 O 1.34228 * 120.00186 * 295.48512 * 18 17 16 21 21 C 1.53771 * 113.61629 * 162.62934 * 17 16 14 22 22 C 1.53780 * 87.08254 * 220.01585 * 21 17 16 23 23 C 1.53779 * 113.61256 * 65.12891 * 17 16 14 24 24 H 1.08992 * 109.47179 * 294.72614 * 1 2 3 25 25 H 1.08995 * 109.47068 * 54.73218 * 1 2 3 26 26 H 1.09006 * 109.46715 * 174.72827 * 1 2 3 27 27 H 0.97002 * 119.99983 * 179.97438 * 7 6 4 28 28 H 1.09004 * 109.46710 * 269.99861 * 13 12 2 29 29 H 1.08993 * 109.47267 * 29.99352 * 13 12 2 30 30 H 1.08998 * 109.46897 * 150.00365 * 13 12 2 31 31 H 1.08993 * 109.47165 * 58.09856 * 16 14 12 32 32 H 1.08999 * 109.47099 * 298.09965 * 16 14 12 33 33 H 0.96700 * 116.99717 * 180.02562 * 20 18 17 34 34 H 1.08997 * 113.61634 * 334.56858 * 21 17 16 35 35 H 1.09008 * 113.61436 * 105.47206 * 21 17 16 36 36 H 1.08994 * 113.61958 * 270.88380 * 22 21 17 37 37 H 1.09003 * 113.61559 * 139.98074 * 22 21 17 38 38 H 1.08997 * 113.61527 * 254.53186 * 23 17 16 39 39 H 1.09000 * 113.61705 * 25.44123 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.1556 -1.7833 -1.2221 6 6 2.3348 0.0094 -2.3669 7 7 2.7507 -0.6129 -3.4482 8 14 2.1536 1.8687 -2.3707 9 1 3.4294 2.4912 -1.9346 10 1 1.8206 2.3307 -3.7421 11 1 1.0667 2.2619 -1.4383 12 7 2.0184 -0.6906 1.1962 13 6 1.6645 -2.0932 1.4279 14 6 2.7931 -0.0356 2.0833 15 8 3.0865 1.1254 1.8912 16 6 3.2960 -0.7461 3.3135 17 6 4.1845 0.2011 4.1224 18 6 5.4566 0.5677 3.4023 19 8 5.6551 1.7129 3.0719 20 8 6.3690 -0.3777 3.1283 21 6 4.4052 -0.2515 5.5753 22 6 4.2674 1.2272 5.9741 23 6 3.4309 1.4122 4.6970 24 1 -0.3633 0.4298 0.9334 25 1 -0.3633 0.5933 -0.8390 26 1 -0.3633 -1.0234 -0.0944 27 1 2.9631 -0.1066 -4.2478 28 1 0.7376 -2.1444 1.9992 29 1 1.5296 -2.5968 0.4708 30 1 2.4630 -2.5818 1.9864 31 1 3.8736 -1.6215 3.0169 32 1 2.4489 -1.0595 3.9238 33 1 7.1693 -0.0944 2.6652 34 1 3.6063 -0.8843 5.9617 35 1 5.3981 -0.6624 5.7585 36 1 5.2109 1.7728 5.9609 37 1 3.7014 1.3808 6.8929 38 1 3.6371 2.3444 4.1712 39 1 2.3655 1.2343 4.8434 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310406961.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:49 Heat of formation + Delta-G solvation = -131.578537 kcal Electronic energy + Delta-G solvation = -21919.089218 eV Core-core repulsion = 18633.535292 eV Total energy + Delta-G solvation = -3285.553926 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.14630 -40.50199 -38.94126 -37.06477 -37.02631 -34.75146 -32.80607 -30.95941 -27.57381 -27.28565 -26.73919 -26.22333 -23.67529 -22.44759 -20.27623 -19.88360 -19.24360 -18.77308 -17.85344 -17.53443 -16.90756 -16.87241 -16.29738 -15.87840 -15.44693 -15.23169 -14.72550 -14.35689 -14.28057 -14.18322 -13.75446 -13.36855 -13.28714 -13.19938 -13.06147 -12.90595 -12.69038 -12.59321 -12.53861 -12.26258 -11.90851 -11.84392 -11.46326 -11.38184 -11.25162 -11.20450 -10.85278 -10.50329 -9.29024 -8.40669 -6.43198 1.20690 1.24010 1.28374 1.36141 1.82920 2.08356 2.22941 2.33637 3.01636 3.36244 3.52689 3.72172 3.88904 3.93816 4.30964 4.41865 4.46049 4.53365 4.60604 4.70580 4.73915 4.79738 4.81416 4.87435 4.89639 5.05478 5.08077 5.16653 5.17388 5.21017 5.34445 5.45803 5.53968 5.62031 5.84569 6.14930 6.62592 6.81095 7.00156 7.22492 7.45122 8.74698 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022999 B = 0.006239 C = 0.005839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.166587 B = 4486.831135 C = 4794.227805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.221 3.779 3 H 0.033 0.967 4 C -0.516 4.516 5 H 0.057 0.943 6 C 0.029 3.971 7 N -0.934 5.934 8 Si 0.921 3.079 9 H -0.294 1.294 10 H -0.274 1.274 11 H -0.248 1.248 12 N -0.599 5.599 13 C 0.077 3.923 14 C 0.483 3.517 15 O -0.592 6.592 16 C -0.111 4.111 17 C -0.075 4.075 18 C 0.497 3.503 19 O -0.543 6.543 20 O -0.511 6.511 21 C -0.096 4.096 22 C -0.141 4.141 23 C -0.117 4.117 24 H 0.048 0.952 25 H 0.044 0.956 26 H 0.064 0.936 27 H 0.267 0.733 28 H 0.079 0.921 29 H 0.058 0.942 30 H 0.091 0.909 31 H 0.117 0.883 32 H 0.150 0.850 33 H 0.421 0.579 34 H 0.135 0.865 35 H 0.085 0.915 36 H 0.062 0.938 37 H 0.102 0.898 38 H 0.042 0.958 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.240 -4.298 21.092 21.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.118 3.882 3 H 0.051 0.949 4 C -0.555 4.555 5 H 0.075 0.925 6 C -0.170 4.170 7 N -0.574 5.574 8 Si 0.747 3.253 9 H -0.221 1.221 10 H -0.199 1.199 11 H -0.172 1.172 12 N -0.330 5.330 13 C -0.065 4.065 14 C 0.272 3.728 15 O -0.473 6.473 16 C -0.150 4.150 17 C -0.077 4.077 18 C 0.340 3.660 19 O -0.432 6.432 20 O -0.324 6.324 21 C -0.133 4.133 22 C -0.178 4.178 23 C -0.154 4.154 24 H 0.067 0.933 25 H 0.063 0.937 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.097 0.903 29 H 0.077 0.923 30 H 0.110 0.890 31 H 0.135 0.865 32 H 0.167 0.833 33 H 0.282 0.718 34 H 0.153 0.847 35 H 0.103 0.897 36 H 0.081 0.919 37 H 0.120 0.880 38 H 0.061 0.939 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.123 -3.512 20.895 21.189 hybrid contribution 0.892 1.346 -1.628 2.293 sum 1.015 -2.166 19.267 19.415 Atomic orbital electron populations 1.22059 0.95791 1.01848 0.99867 1.19036 0.92599 0.93271 0.83258 0.94942 1.21413 1.43256 0.95073 0.95743 0.92500 1.25567 0.94277 1.01664 0.95500 1.69974 1.46700 1.37422 1.03316 0.86157 0.79090 0.82299 0.77743 1.22141 1.19929 1.17194 1.48249 1.49520 1.13458 1.21809 1.21910 1.01895 0.80310 1.02418 1.21523 0.78427 0.87109 0.85740 1.90721 1.59202 1.19407 1.77993 1.21787 1.01513 0.98313 0.93415 1.21522 0.89616 1.00034 0.96501 1.23245 0.84873 0.82456 0.75473 1.90681 1.78019 1.23800 1.50696 1.84442 1.32769 1.42672 1.72540 1.23060 1.05123 0.97164 0.87949 1.22916 0.99901 0.96776 0.98207 1.22905 0.99997 0.96294 0.96215 0.93288 0.93671 0.91676 0.92348 0.90267 0.92309 0.89042 0.86524 0.83268 0.71804 0.84735 0.89658 0.91892 0.87950 0.93856 0.87515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.55 9.01 71.98 0.65 -4.90 16 2 C 0.22 10.63 2.19 44.25 0.10 10.72 16 3 H 0.03 1.78 4.20 -2.39 -0.01 1.77 16 4 C -0.52 -28.90 8.73 25.60 0.22 -28.67 16 5 H 0.06 3.36 6.82 -2.91 -0.02 3.34 16 6 C 0.03 1.73 5.47 84.66 0.46 2.19 16 7 N -0.93 -58.10 13.96 21.45 0.30 -57.80 16 8 Si 0.92 47.93 26.68 68.60 1.83 49.76 16 9 H -0.29 -16.25 7.11 99.48 0.71 -15.54 16 10 H -0.27 -13.50 7.11 99.48 0.71 -12.79 16 11 H -0.25 -12.22 6.30 99.48 0.63 -11.60 16 12 N -0.60 -23.52 2.75 -826.80 -2.28 -25.79 16 13 C 0.08 2.16 9.42 127.77 1.20 3.36 16 14 C 0.48 18.49 7.33 87.66 0.64 19.14 16 15 O -0.59 -28.87 13.45 0.30 0.00 -28.87 16 16 C -0.11 -2.68 3.73 29.85 0.11 -2.56 16 17 C -0.08 -1.90 0.70 -52.40 -0.04 -1.94 16 18 C 0.50 16.17 5.99 71.24 0.43 16.60 16 19 O -0.54 -22.82 16.30 24.56 0.40 -22.42 16 20 O -0.51 -13.16 13.42 -51.39 -0.69 -13.85 16 21 C -0.10 -1.42 7.22 31.12 0.22 -1.20 16 22 C -0.14 -2.56 7.81 31.12 0.24 -2.31 16 23 C -0.12 -3.03 5.92 31.12 0.18 -2.85 16 24 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.04 1.88 7.38 -2.39 -0.02 1.86 16 26 H 0.06 2.40 7.85 -2.38 -0.02 2.38 16 27 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 28 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.06 1.94 6.56 -2.39 -0.02 1.93 16 30 H 0.09 1.93 6.39 -2.39 -0.02 1.92 16 31 H 0.12 2.47 7.30 -2.39 -0.02 2.45 16 32 H 0.15 2.22 8.05 -2.39 -0.02 2.20 16 33 H 0.42 8.02 9.10 -74.06 -0.67 7.35 16 34 H 0.13 1.05 8.04 -2.39 -0.02 1.03 16 35 H 0.08 1.16 8.10 -2.38 -0.02 1.15 16 36 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.04 1.54 7.27 -2.39 -0.02 1.52 16 39 H 0.11 2.34 8.10 -2.39 -0.02 2.32 16 Total: -1.00 -83.48 316.60 4.31 -79.17 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: 0.31 Total: 12.22 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: 4.43 Total: 7.59 kcal Atomic # 7 Polarization: -81.62 SS G_CDS: -1.98 Total: -83.60 kcal Atomic # 8 Polarization: -64.85 SS G_CDS: -0.29 Total: -65.13 kcal Atomic # 14 Polarization: 47.93 SS G_CDS: 1.83 Total: 49.76 kcal Total: -83.48 4.31 -79.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310406961.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.410 kcal (2) G-P(sol) polarization free energy of solvation -83.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds