Wall clock time and date at job start Mon Mar 30 2020 04:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46897 * 111.00087 * 2 1 4 4 C 1.53000 * 109.46964 * 293.80951 * 3 2 1 5 5 C 1.50695 * 115.56472 * 281.74980 * 4 3 2 6 6 H 1.07998 * 120.00433 * 139.65190 * 5 4 3 7 7 C 1.37883 * 119.99835 * 319.63969 * 5 4 3 8 8 N 1.31514 * 119.99922 * 173.26370 * 7 5 4 9 9 Si 1.86800 * 119.99962 * 353.27389 * 7 5 4 10 10 H 1.48502 * 109.47091 * 96.38897 * 9 7 5 11 11 H 1.48495 * 109.47120 * 216.39023 * 9 7 5 12 12 H 1.48502 * 109.47143 * 336.39120 * 9 7 5 13 13 C 1.53004 * 117.49795 * 67.43532 * 4 3 2 14 14 C 1.52999 * 60.00017 * 107.48688 * 13 4 3 15 15 C 1.46901 * 111.00070 * 123.95452 * 2 1 3 16 16 C 1.50698 * 110.45385 * 300.41772 * 15 2 1 17 17 O 1.20830 * 120.00162 * 145.07870 * 16 15 2 18 18 O 1.34227 * 120.00242 * 325.08135 * 16 15 2 19 19 C 1.54513 * 110.51346 * 63.02055 * 15 2 1 20 20 C 1.54476 * 104.05924 * 118.64465 * 19 15 2 21 21 O 1.44429 * 104.80669 * 23.98561 * 20 19 15 22 22 C 1.44430 * 105.26911 * 319.48177 * 21 20 19 23 23 H 1.09000 * 109.47183 * 75.93274 * 1 2 3 24 24 H 1.09002 * 109.47117 * 195.93051 * 1 2 3 25 25 H 1.08990 * 109.47414 * 315.92804 * 1 2 3 26 26 H 1.09000 * 109.47210 * 173.81136 * 3 2 1 27 27 H 1.08993 * 109.47310 * 53.81004 * 3 2 1 28 28 H 0.97004 * 119.99805 * 179.97438 * 8 7 5 29 29 H 1.09000 * 117.49571 * 0.02562 * 13 4 3 30 30 H 1.08995 * 117.50152 * 214.97831 * 13 4 3 31 31 H 1.09001 * 117.49602 * 107.48896 * 14 13 4 32 32 H 1.08995 * 117.50280 * 252.51124 * 14 13 4 33 33 H 0.96703 * 116.99851 * 180.02562 * 18 16 15 34 34 H 1.08993 * 110.51179 * 237.29266 * 19 15 2 35 35 H 1.09005 * 110.50796 * 0.02562 * 19 15 2 36 36 H 1.09004 * 110.36870 * 142.81069 * 20 19 15 37 37 H 1.08994 * 110.37841 * 265.14729 * 20 19 15 38 38 H 1.08997 * 110.37486 * 281.68457 * 22 21 20 39 39 H 1.08997 * 110.36959 * 159.34616 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6345 2.0562 -1.3197 5 6 2.4896 1.6805 -2.5024 6 1 2.0361 1.5318 -3.4712 7 6 3.8511 1.5270 -2.3477 8 7 4.5789 1.0715 -3.3439 9 14 4.6618 1.9656 -0.7229 10 1 4.8173 0.7391 0.0997 11 1 5.9974 2.5611 -0.9810 12 1 3.8151 2.9452 0.0042 13 6 0.1560 2.3500 -1.5820 14 6 1.1164 3.4941 -1.2509 15 6 1.9954 -0.7660 1.1376 16 6 1.5168 -0.1737 2.4380 17 8 1.2724 -0.8945 3.3765 18 8 1.3618 1.1546 2.5537 19 6 1.5766 -2.2495 1.0317 20 6 2.9167 -3.0120 0.9367 21 8 3.8853 -2.1337 1.5502 22 6 3.5390 -0.8077 1.0941 23 1 -0.3633 0.2498 -0.9968 24 1 -0.3633 -0.9882 0.2821 25 1 -0.3634 0.7383 0.7147 26 1 3.0794 1.3445 0.1108 27 1 1.5592 1.9280 0.8293 28 1 5.5368 0.9639 -3.2351 29 1 -0.5594 2.0558 -0.8141 30 1 -0.1981 2.2717 -2.6098 31 1 1.3940 4.1685 -2.0610 32 1 1.0327 3.9523 -0.2654 33 1 1.0529 1.4877 3.4074 34 1 1.0254 -2.5551 1.9210 35 1 0.9792 -2.4146 0.1350 36 1 2.8575 -3.9528 1.4840 37 1 3.1765 -3.1943 -0.1060 38 1 3.8942 -0.6520 0.0755 39 1 3.9580 -0.0553 1.7622 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310459970.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:37 Heat of formation + Delta-G solvation = -61.507546 kcal Electronic energy + Delta-G solvation = -23014.244427 eV Core-core repulsion = 19731.729007 eV Total energy + Delta-G solvation = -3282.515420 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.13624 -38.76619 -37.81854 -36.10010 -35.10331 -32.17019 -30.85895 -29.43230 -27.77032 -25.34535 -24.47003 -23.26770 -22.51861 -21.38725 -19.71726 -19.12771 -18.05382 -17.30455 -16.72083 -16.26275 -15.98106 -15.24424 -15.02411 -14.68691 -14.08244 -14.00052 -13.58048 -13.34805 -12.99643 -12.75609 -12.53776 -12.07978 -11.84087 -11.68380 -11.60170 -11.46632 -11.20991 -10.94726 -10.80244 -10.58911 -10.40728 -10.19456 -9.71536 -9.52843 -9.40061 -9.12967 -8.69286 -8.35458 -7.97349 -6.10369 -4.04078 2.14083 2.95595 3.12500 3.34699 3.37918 3.86298 4.21388 4.36382 4.40302 4.76850 4.93675 5.10980 5.22551 5.32714 5.36844 5.49006 5.65581 5.69375 5.77673 5.81779 5.83611 5.88444 5.99201 6.04721 6.17491 6.25386 6.34795 6.44643 6.46137 6.53192 6.71666 6.79127 6.96414 7.12658 7.28159 7.44189 7.77658 7.88249 8.52943 8.93116 9.53426 11.02284 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.018089 B = 0.010155 C = 0.008296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.561404 B = 2756.532404 C = 3374.125645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.486 5.486 3 C 0.076 3.924 4 C 0.019 3.981 5 C -0.466 4.466 6 H 0.076 0.924 7 C 0.078 3.922 8 N -0.894 5.894 9 Si 0.869 3.131 10 H -0.261 1.261 11 H -0.302 1.302 12 H -0.265 1.265 13 C -0.194 4.194 14 C -0.208 4.208 15 C 0.085 3.915 16 C 0.459 3.541 17 O -0.515 6.515 18 O -0.503 6.503 19 C -0.138 4.138 20 C 0.050 3.950 21 O -0.372 6.372 22 C 0.057 3.943 23 H 0.095 0.905 24 H 0.058 0.942 25 H 0.028 0.972 26 H 0.063 0.937 27 H 0.057 0.943 28 H 0.264 0.736 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.395 0.605 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.071 0.929 38 H 0.110 0.890 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.525 -3.219 9.873 12.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.210 5.210 3 C -0.050 4.050 4 C 0.017 3.983 5 C -0.503 4.503 6 H 0.094 0.906 7 C -0.124 4.124 8 N -0.531 5.531 9 Si 0.702 3.298 10 H -0.189 1.189 11 H -0.231 1.231 12 H -0.190 1.190 13 C -0.231 4.231 14 C -0.246 4.246 15 C -0.008 4.008 16 C 0.299 3.701 17 O -0.401 6.401 18 O -0.315 6.315 19 C -0.176 4.176 20 C -0.027 4.027 21 O -0.290 6.290 22 C -0.020 4.020 23 H 0.113 0.887 24 H 0.076 0.924 25 H 0.046 0.954 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.100 0.900 31 H 0.104 0.896 32 H 0.084 0.916 33 H 0.254 0.746 34 H 0.109 0.891 35 H 0.121 0.879 36 H 0.112 0.888 37 H 0.089 0.911 38 H 0.127 0.873 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.927 -3.923 9.389 11.776 hybrid contribution -0.193 1.069 2.035 2.307 sum -6.120 -2.855 11.424 13.271 Atomic orbital electron populations 1.22831 0.87137 1.00156 1.03288 1.62207 1.07998 1.15774 1.35058 1.22564 0.98741 0.86181 0.97496 1.19254 0.92881 0.92256 0.93880 1.20267 0.90887 1.45565 0.93616 0.90610 1.24922 0.97218 0.94065 0.96219 1.69887 1.06529 1.44775 1.31948 0.87335 0.77977 0.79517 0.84979 1.18924 1.23068 1.19037 1.22975 0.94071 1.05334 1.00722 1.23195 1.07329 0.93802 1.00310 1.22847 0.98300 0.95755 0.83931 1.25094 0.73465 0.80181 0.91349 1.90646 1.47062 1.61463 1.40941 1.84954 1.79717 1.24831 1.41961 1.23101 0.99716 0.90131 1.04649 1.23412 0.86397 0.93931 0.98927 1.89121 1.52692 1.16616 1.70588 1.24102 0.89401 0.85532 1.02917 0.88694 0.92374 0.95350 0.91915 0.92579 0.92600 0.90592 0.89950 0.89647 0.91591 0.74602 0.89140 0.87930 0.88846 0.91068 0.87256 0.89352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 7.14 60.06 0.43 0.64 16 2 N -0.49 -8.93 4.49 -226.69 -1.02 -9.95 16 3 C 0.08 1.53 3.02 -3.83 -0.01 1.52 16 4 C 0.02 0.41 1.27 -155.66 -0.20 0.21 16 5 C -0.47 -12.50 9.57 -34.44 -0.33 -12.83 16 6 H 0.08 2.24 8.06 -52.49 -0.42 1.81 16 7 C 0.08 2.14 5.45 -17.82 -0.10 2.04 16 8 N -0.89 -26.29 13.96 55.43 0.77 -25.52 16 9 Si 0.87 20.54 23.73 -169.99 -4.03 16.51 16 10 H -0.26 -5.65 3.57 56.52 0.20 -5.45 16 11 H -0.30 -7.41 7.11 56.52 0.40 -7.00 16 12 H -0.26 -6.07 6.34 56.52 0.36 -5.71 16 13 C -0.19 -3.72 7.98 -26.73 -0.21 -3.93 16 14 C -0.21 -4.23 9.88 -26.73 -0.26 -4.49 16 15 C 0.08 1.45 0.59 -131.18 -0.08 1.37 16 16 C 0.46 7.53 6.19 36.00 0.22 7.75 16 17 O -0.51 -9.13 16.32 -18.75 -0.31 -9.44 16 18 O -0.50 -7.16 9.42 -39.25 -0.37 -7.53 16 19 C -0.14 -2.01 5.48 -25.16 -0.14 -2.15 16 20 C 0.05 0.72 7.63 37.93 0.29 1.01 16 21 O -0.37 -6.63 11.65 -35.23 -0.41 -7.04 16 22 C 0.06 1.07 4.37 37.93 0.17 1.23 16 23 H 0.09 1.53 5.83 -51.93 -0.30 1.23 16 24 H 0.06 0.79 6.28 -51.93 -0.33 0.46 16 25 H 0.03 0.43 6.64 -51.93 -0.34 0.08 16 26 H 0.06 1.36 0.95 -51.93 -0.05 1.31 16 27 H 0.06 1.08 4.98 -51.93 -0.26 0.82 16 28 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.08 1.28 5.75 -51.93 -0.30 0.98 16 30 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 31 H 0.08 1.78 8.14 -51.93 -0.42 1.35 16 32 H 0.07 1.23 8.10 -51.93 -0.42 0.81 16 33 H 0.39 3.68 9.10 45.56 0.41 4.10 16 34 H 0.09 1.28 6.76 -51.93 -0.35 0.93 16 35 H 0.10 1.37 6.91 -51.93 -0.36 1.01 16 36 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.11 2.27 5.66 -51.93 -0.29 1.97 16 39 H 0.09 1.61 7.44 -51.93 -0.39 1.23 16 LS Contribution 288.52 15.07 4.35 4.35 Total: -1.00 -31.17 288.52 -5.71 -36.88 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -4.47 Total: 9.37 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -0.22 Total: -7.62 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: -0.24 Total: -35.47 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: -1.09 Total: -24.02 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.03 Total: 16.51 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -31.17 -5.71 -36.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310459970.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.628 kcal (2) G-P(sol) polarization free energy of solvation -31.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds