Wall clock time and date at job start Mon Mar 30 2020 04:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46897 * 111.00087 * 2 1 4 4 C 1.53000 * 109.46964 * 293.80951 * 3 2 1 5 5 C 1.50695 * 115.56472 * 281.74980 * 4 3 2 6 6 H 1.07998 * 120.00433 * 139.65190 * 5 4 3 7 7 C 1.37883 * 119.99835 * 319.63969 * 5 4 3 8 8 N 1.31514 * 119.99922 * 173.26370 * 7 5 4 9 9 Si 1.86800 * 119.99962 * 353.27389 * 7 5 4 10 10 H 1.48502 * 109.47091 * 96.38897 * 9 7 5 11 11 H 1.48495 * 109.47120 * 216.39023 * 9 7 5 12 12 H 1.48502 * 109.47143 * 336.39120 * 9 7 5 13 13 C 1.53004 * 117.49795 * 67.43532 * 4 3 2 14 14 C 1.52999 * 60.00017 * 107.48688 * 13 4 3 15 15 C 1.46901 * 111.00070 * 123.95452 * 2 1 3 16 16 C 1.50698 * 110.45385 * 300.41772 * 15 2 1 17 17 O 1.20830 * 120.00162 * 145.07870 * 16 15 2 18 18 O 1.34227 * 120.00242 * 325.08135 * 16 15 2 19 19 C 1.54513 * 110.51346 * 63.02055 * 15 2 1 20 20 C 1.54476 * 104.05924 * 118.64465 * 19 15 2 21 21 O 1.44429 * 104.80669 * 23.98561 * 20 19 15 22 22 C 1.44430 * 105.26911 * 319.48177 * 21 20 19 23 23 H 1.09000 * 109.47183 * 75.93274 * 1 2 3 24 24 H 1.09002 * 109.47117 * 195.93051 * 1 2 3 25 25 H 1.08990 * 109.47414 * 315.92804 * 1 2 3 26 26 H 1.09000 * 109.47210 * 173.81136 * 3 2 1 27 27 H 1.08993 * 109.47310 * 53.81004 * 3 2 1 28 28 H 0.97004 * 119.99805 * 179.97438 * 8 7 5 29 29 H 1.09000 * 117.49571 * 0.02562 * 13 4 3 30 30 H 1.08995 * 117.50152 * 214.97831 * 13 4 3 31 31 H 1.09001 * 117.49602 * 107.48896 * 14 13 4 32 32 H 1.08995 * 117.50280 * 252.51124 * 14 13 4 33 33 H 0.96703 * 116.99851 * 180.02562 * 18 16 15 34 34 H 1.08993 * 110.51179 * 237.29266 * 19 15 2 35 35 H 1.09005 * 110.50796 * 0.02562 * 19 15 2 36 36 H 1.09004 * 110.36870 * 142.81069 * 20 19 15 37 37 H 1.08994 * 110.37841 * 265.14729 * 20 19 15 38 38 H 1.08997 * 110.37486 * 281.68457 * 22 21 20 39 39 H 1.08997 * 110.36959 * 159.34616 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6345 2.0562 -1.3197 5 6 2.4896 1.6805 -2.5024 6 1 2.0361 1.5318 -3.4712 7 6 3.8511 1.5270 -2.3477 8 7 4.5789 1.0715 -3.3439 9 14 4.6618 1.9656 -0.7229 10 1 4.8173 0.7391 0.0997 11 1 5.9974 2.5611 -0.9810 12 1 3.8151 2.9452 0.0042 13 6 0.1560 2.3500 -1.5820 14 6 1.1164 3.4941 -1.2509 15 6 1.9954 -0.7660 1.1376 16 6 1.5168 -0.1737 2.4380 17 8 1.2724 -0.8945 3.3765 18 8 1.3618 1.1546 2.5537 19 6 1.5766 -2.2495 1.0317 20 6 2.9167 -3.0120 0.9367 21 8 3.8853 -2.1337 1.5502 22 6 3.5390 -0.8077 1.0941 23 1 -0.3633 0.2498 -0.9968 24 1 -0.3633 -0.9882 0.2821 25 1 -0.3634 0.7383 0.7147 26 1 3.0794 1.3445 0.1108 27 1 1.5592 1.9280 0.8293 28 1 5.5368 0.9639 -3.2351 29 1 -0.5594 2.0558 -0.8141 30 1 -0.1981 2.2717 -2.6098 31 1 1.3940 4.1685 -2.0610 32 1 1.0327 3.9523 -0.2654 33 1 1.0529 1.4877 3.4074 34 1 1.0254 -2.5551 1.9210 35 1 0.9792 -2.4146 0.1350 36 1 2.8575 -3.9528 1.4840 37 1 3.1765 -3.1943 -0.1060 38 1 3.8942 -0.6520 0.0755 39 1 3.9580 -0.0553 1.7622 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310459970.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:36 Heat of formation + Delta-G solvation = -86.402746 kcal Electronic energy + Delta-G solvation = -23015.323964 eV Core-core repulsion = 19731.729007 eV Total energy + Delta-G solvation = -3283.594957 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.39725 -40.02826 -39.32605 -37.30659 -36.54917 -34.23597 -32.12300 -30.72655 -29.29067 -27.22392 -25.78925 -24.62632 -23.74897 -22.94991 -20.94337 -20.92537 -19.28285 -18.73307 -18.17516 -17.91384 -17.34201 -16.57248 -16.45390 -16.12573 -15.56291 -15.49341 -15.04028 -14.71945 -14.58600 -14.31914 -13.81996 -13.51335 -13.45499 -13.06390 -12.91405 -12.80736 -12.59028 -12.37454 -12.23926 -12.07837 -11.84988 -11.79799 -11.32819 -11.25662 -11.05176 -10.78144 -10.39125 -10.26839 -9.33257 -8.22080 -6.18903 0.90206 1.26759 1.41854 1.49753 1.82697 2.37978 2.53463 2.91556 3.03953 3.19240 3.48830 3.62173 3.96009 4.02695 4.08418 4.17535 4.24016 4.28690 4.42523 4.51572 4.54597 4.57724 4.72239 4.73716 4.80503 4.90777 4.92049 4.96679 5.11407 5.12257 5.33171 5.38951 5.51457 5.56058 5.76992 6.00043 6.03284 6.41179 6.80180 6.81187 7.42188 8.94366 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.018089 B = 0.010155 C = 0.008296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.561404 B = 2756.532404 C = 3374.125645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.505 5.505 3 C 0.083 3.917 4 C -0.011 4.011 5 C -0.466 4.466 6 H 0.029 0.971 7 C 0.025 3.975 8 N -0.947 5.947 9 Si 0.926 3.074 10 H -0.236 1.236 11 H -0.319 1.319 12 H -0.247 1.247 13 C -0.170 4.170 14 C -0.202 4.202 15 C 0.082 3.918 16 C 0.468 3.532 17 O -0.529 6.529 18 O -0.503 6.503 19 C -0.132 4.132 20 C 0.043 3.957 21 O -0.387 6.387 22 C 0.055 3.945 23 H 0.086 0.914 24 H 0.079 0.921 25 H 0.041 0.959 26 H 0.047 0.953 27 H 0.076 0.924 28 H 0.262 0.738 29 H 0.109 0.891 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.420 0.580 34 H 0.099 0.901 35 H 0.113 0.887 36 H 0.123 0.877 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.240 -3.215 12.696 15.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.229 5.229 3 C -0.043 4.043 4 C -0.012 4.012 5 C -0.503 4.503 6 H 0.047 0.953 7 C -0.172 4.172 8 N -0.587 5.587 9 Si 0.756 3.244 10 H -0.162 1.162 11 H -0.249 1.249 12 H -0.172 1.172 13 C -0.207 4.207 14 C -0.240 4.240 15 C -0.011 4.011 16 C 0.309 3.691 17 O -0.417 6.417 18 O -0.317 6.317 19 C -0.169 4.169 20 C -0.033 4.033 21 O -0.305 6.305 22 C -0.022 4.022 23 H 0.104 0.896 24 H 0.098 0.902 25 H 0.059 0.941 26 H 0.065 0.935 27 H 0.093 0.907 28 H 0.071 0.929 29 H 0.127 0.873 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.111 0.889 33 H 0.282 0.718 34 H 0.117 0.883 35 H 0.131 0.869 36 H 0.141 0.859 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.690 -3.908 12.238 14.972 hybrid contribution 0.248 1.067 1.067 1.529 sum -7.441 -2.840 13.304 15.506 Atomic orbital electron populations 1.22862 0.85448 1.01945 1.03170 1.62120 1.09633 1.14861 1.36327 1.22367 0.97953 0.87458 0.96537 1.19193 0.94358 0.94222 0.93471 1.20433 0.91550 1.44697 0.93664 0.95307 1.25665 0.97833 0.94119 0.99612 1.70047 1.06687 1.47434 1.34555 0.86446 0.75971 0.80552 0.81441 1.16220 1.24914 1.17176 1.23005 0.92943 1.03430 1.01318 1.23205 1.06695 0.92757 1.01375 1.22818 0.97166 0.96936 0.84164 1.24717 0.73109 0.80682 0.90611 1.90650 1.47858 1.61980 1.41246 1.84819 1.79426 1.23589 1.43906 1.23114 0.99809 0.88502 1.05507 1.23667 0.85707 0.94569 0.99321 1.89102 1.53922 1.16676 1.70816 1.23916 0.90836 0.86183 1.01248 0.89565 0.90226 0.94093 0.93544 0.90674 0.92878 0.87295 0.90900 0.90951 0.88854 0.71770 0.88292 0.86902 0.85926 0.91204 0.90060 0.89319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.35 7.14 127.69 0.91 1.26 16 2 N -0.50 -17.31 4.49 -871.11 -3.91 -21.22 16 3 C 0.08 3.14 3.02 86.30 0.26 3.40 16 4 C -0.01 -0.48 1.27 -52.93 -0.07 -0.55 16 5 C -0.47 -25.64 9.57 25.60 0.25 -25.39 16 6 H 0.03 1.79 8.06 -2.91 -0.02 1.77 16 7 C 0.02 1.40 5.45 84.66 0.46 1.86 16 8 N -0.95 -58.27 13.96 21.45 0.30 -57.97 16 9 Si 0.93 42.93 23.73 68.60 1.63 44.56 16 10 H -0.24 -9.89 3.57 99.48 0.35 -9.54 16 11 H -0.32 -15.51 7.11 99.48 0.71 -14.81 16 12 H -0.25 -10.61 6.34 99.48 0.63 -9.98 16 13 C -0.17 -6.12 7.98 30.60 0.24 -5.87 16 14 C -0.20 -7.71 9.88 30.59 0.30 -7.41 16 15 C 0.08 2.58 0.59 3.80 0.00 2.58 16 16 C 0.47 13.64 6.19 71.24 0.44 14.08 16 17 O -0.53 -16.90 16.32 21.95 0.36 -16.54 16 18 O -0.50 -12.09 9.42 -51.39 -0.48 -12.58 16 19 C -0.13 -3.46 5.48 31.61 0.17 -3.29 16 20 C 0.04 1.16 7.63 72.48 0.55 1.71 16 21 O -0.39 -13.14 11.65 -148.98 -1.74 -14.87 16 22 C 0.06 1.97 4.37 72.48 0.32 2.28 16 23 H 0.09 2.54 5.83 -2.39 -0.01 2.52 16 24 H 0.08 1.85 6.28 -2.39 -0.01 1.84 16 25 H 0.04 1.04 6.64 -2.39 -0.02 1.02 16 26 H 0.05 1.92 0.95 -2.39 0.00 1.92 16 27 H 0.08 2.56 4.98 -2.39 -0.01 2.55 16 28 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 29 H 0.11 3.21 5.75 -2.39 -0.01 3.20 16 30 H 0.07 2.75 8.14 -2.39 -0.02 2.74 16 31 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 32 H 0.09 3.07 8.10 -2.39 -0.02 3.05 16 33 H 0.42 5.81 9.10 -74.06 -0.67 5.14 16 34 H 0.10 2.46 6.76 -2.39 -0.02 2.44 16 35 H 0.11 2.70 6.91 -2.38 -0.02 2.68 16 36 H 0.12 2.51 8.14 -2.38 -0.02 2.49 16 37 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.08 3.34 5.66 -2.39 -0.01 3.32 16 39 H 0.09 3.07 7.44 -2.39 -0.02 3.05 16 Total: -1.00 -69.27 288.52 -0.01 -69.28 By element: Atomic # 1 Polarization: 24.69 SS G_CDS: -0.01 Total: 24.68 kcal Atomic # 6 Polarization: -19.18 SS G_CDS: 3.84 Total: -15.33 kcal Atomic # 7 Polarization: -75.58 SS G_CDS: -3.61 Total: -79.19 kcal Atomic # 8 Polarization: -42.13 SS G_CDS: -1.86 Total: -44.00 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 1.63 Total: 44.56 kcal Total: -69.27 -0.01 -69.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310459970.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.124 kcal (2) G-P(sol) polarization free energy of solvation -69.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds