Wall clock time and date at job start Mon Mar 30 2020 05:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.87337 * 2 1 4 4 C 1.54328 * 109.88457 * 238.98761 * 2 1 3 5 5 H 1.09006 * 110.71536 * 336.74991 * 4 2 1 6 6 N 1.46899 * 110.72191 * 100.02319 * 4 2 1 7 7 C 1.46903 * 110.99771 * 180.02562 * 6 4 2 8 8 C 1.46900 * 111.00095 * 303.95809 * 6 4 2 9 9 C 1.55403 * 102.82774 * 218.48319 * 4 2 1 10 10 C 1.54903 * 101.66790 * 35.33394 * 9 4 2 11 11 N 1.47022 * 109.88675 * 121.01761 * 2 1 3 12 12 C 1.34774 * 125.64364 * 298.39655 * 11 2 1 13 13 O 1.21439 * 120.00310 * 359.97438 * 12 11 2 14 14 C 1.48837 * 119.99546 * 179.97438 * 12 11 2 15 15 O 1.21496 * 120.00323 * 359.97438 * 14 12 11 16 16 N 1.34776 * 119.99756 * 180.02562 * 14 12 11 17 17 C 1.36117 * 119.99851 * 180.02562 * 16 14 12 18 18 H 1.07999 * 120.00437 * 359.97438 * 17 16 14 19 19 C 1.39589 * 119.99820 * 179.97438 * 17 16 14 20 20 N 1.31013 * 120.00387 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99829 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47063 * 60.00013 * 21 19 17 23 23 H 1.48503 * 109.47007 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47135 * 299.99833 * 21 19 17 25 25 H 1.09002 * 109.47153 * 300.69831 * 1 2 3 26 26 H 1.09001 * 109.46832 * 180.70022 * 1 2 3 27 27 H 1.09004 * 109.47261 * 60.70003 * 1 2 3 28 28 H 1.08998 * 109.47123 * 59.99997 * 7 6 4 29 29 H 1.09003 * 109.46589 * 180.02562 * 7 6 4 30 30 H 1.08997 * 109.46852 * 299.99836 * 7 6 4 31 31 H 1.08998 * 109.47543 * 59.99264 * 8 6 4 32 32 H 1.09000 * 109.47024 * 180.02562 * 8 6 4 33 33 H 1.09007 * 109.47088 * 299.99848 * 8 6 4 34 34 H 1.08998 * 110.88682 * 277.25916 * 9 4 2 35 35 H 1.09002 * 111.06681 * 153.49006 * 9 4 2 36 36 H 1.09002 * 110.36788 * 204.23581 * 10 9 4 37 37 H 1.08998 * 110.36812 * 81.91638 * 10 9 4 38 38 H 0.96999 * 120.00006 * 359.97438 * 16 14 12 39 39 H 0.96994 * 120.00326 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7477 -1.2438 5 1 1.3051 -1.4437 -1.6203 6 7 2.4566 0.2019 -2.2901 7 6 2.9568 -0.5036 -3.4775 8 6 1.3478 1.0998 -2.6399 9 6 3.2876 -1.5152 -0.6903 10 6 2.8146 -1.8784 0.7393 11 7 2.0301 -0.7124 1.1849 12 6 1.8074 -0.3586 2.4661 13 8 1.1427 0.6261 2.7174 14 6 2.3763 -1.1749 3.5731 15 8 3.0409 -2.1604 3.3217 16 7 2.1532 -0.8214 4.8544 17 6 2.6739 -1.5676 5.8667 18 1 3.2654 -2.4431 5.6433 19 6 2.4433 -1.2011 7.1938 20 7 1.7262 -0.1388 7.4650 21 14 3.1573 -2.2256 8.5832 22 1 4.6378 -2.2502 8.4698 23 1 2.7700 -1.6298 9.8871 24 1 2.6312 -3.6116 8.4971 25 1 -0.3633 0.5246 0.8837 26 1 -0.3633 -1.0276 0.0126 27 1 -0.3634 0.5029 -0.8962 28 1 2.1729 -1.1492 -3.8737 29 1 3.2476 0.2230 -4.2362 30 1 3.8214 -1.1081 -3.2035 31 1 1.0423 1.6612 -1.7570 32 1 1.6722 1.7921 -3.4169 33 1 0.5059 0.5121 -3.0059 34 1 4.1654 -0.8697 -0.6593 35 1 3.4859 -2.4127 -1.2762 36 1 3.6717 -2.0319 1.3950 37 1 2.1887 -2.7705 0.7166 38 1 1.6223 -0.0348 5.0551 39 1 1.5663 0.1161 8.3871 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310575011.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:21 Heat of formation + Delta-G solvation = -54.710706 kcal Electronic energy + Delta-G solvation = -21307.455403 eV Core-core repulsion = 18057.527467 eV Total energy + Delta-G solvation = -3249.927936 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.19733 -38.53081 -36.99963 -35.70235 -34.15608 -31.48944 -31.44042 -30.49150 -27.55584 -26.14839 -25.79597 -23.73248 -22.72690 -21.38958 -20.09270 -18.75226 -18.03837 -16.81522 -16.51449 -15.64607 -15.06871 -14.94651 -14.78998 -14.63992 -13.95325 -13.89527 -13.53022 -13.40084 -13.00512 -12.76594 -12.51718 -12.42285 -12.14432 -11.88703 -11.77563 -11.73463 -11.37626 -11.21018 -11.16724 -10.82203 -10.56460 -10.53750 -10.39168 -10.12186 -9.68784 -8.55456 -8.30658 -8.19728 -8.08258 -6.65097 -3.97623 2.48383 3.10575 3.17675 3.18448 3.25231 3.81662 4.06277 4.29508 4.38037 4.70220 4.96370 4.98293 5.05249 5.16390 5.20674 5.31217 5.34533 5.41519 5.45622 5.50570 5.58705 5.68593 5.74621 5.80596 5.90442 6.02315 6.12786 6.31103 6.35574 6.36690 6.74859 6.81198 6.92266 7.32521 7.75518 7.88101 8.32664 8.62444 8.97864 9.34080 9.87097 10.49801 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.043032 B = 0.004156 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.526633 B = 6735.824853 C = 7204.956237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.141 3.859 3 H 0.084 0.916 4 C 0.072 3.928 5 H 0.059 0.941 6 N -0.536 5.536 7 C 0.025 3.975 8 C 0.017 3.983 9 C -0.128 4.128 10 C 0.107 3.893 11 N -0.596 5.596 12 C 0.529 3.471 13 O -0.545 6.545 14 C 0.399 3.601 15 O -0.592 6.592 16 N -0.499 5.499 17 C -0.306 4.306 18 H 0.112 0.888 19 C 0.031 3.969 20 N -0.870 5.870 21 Si 0.939 3.061 22 H -0.269 1.269 23 H -0.281 1.281 24 H -0.269 1.269 25 H 0.074 0.926 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.024 0.976 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.026 0.974 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.109 0.891 37 H 0.064 0.936 38 H 0.404 0.596 39 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.135 -0.420 -17.400 17.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.037 3.963 3 H 0.101 0.899 4 C -0.037 4.037 5 H 0.076 0.924 6 N -0.260 5.260 7 C -0.123 4.123 8 C -0.131 4.131 9 C -0.167 4.167 10 C -0.016 4.016 11 N -0.332 5.332 12 C 0.316 3.684 13 O -0.422 6.422 14 C 0.183 3.817 15 O -0.480 6.480 16 N -0.134 5.134 17 C -0.437 4.437 18 H 0.130 0.870 19 C -0.176 4.176 20 N -0.508 5.508 21 Si 0.765 3.235 22 H -0.194 1.194 23 H -0.206 1.206 24 H -0.194 1.194 25 H 0.093 0.907 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.043 0.957 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.045 0.955 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.128 0.872 37 H 0.082 0.918 38 H 0.240 0.760 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.227 -0.104 -16.962 16.964 hybrid contribution -0.769 -0.454 0.373 0.968 sum -0.543 -0.557 -16.589 16.608 Atomic orbital electron populations 1.22277 0.95044 1.02316 1.02941 1.21459 0.93988 0.96907 0.83907 0.89852 1.22820 0.96926 0.92832 0.91081 0.92361 1.62011 1.34476 1.20069 1.09478 1.22380 0.99800 0.98120 0.91979 1.22539 0.92114 0.96602 1.01806 1.23001 0.97781 0.99945 0.95928 1.22518 0.97226 0.87782 0.94063 1.48131 1.52404 1.28580 1.04050 1.20434 0.80358 0.84973 0.82617 1.90673 1.40198 1.27863 1.83495 1.18857 0.90135 0.89103 0.83609 1.90515 1.45389 1.29453 1.82665 1.41537 1.42617 1.25542 1.03661 1.19820 1.30163 1.09434 0.84251 0.87024 1.25578 0.96296 0.96599 0.99086 1.69475 1.35707 1.23732 1.21855 0.85785 0.79553 0.79533 0.78646 1.19376 1.20620 1.19410 0.90656 0.92625 0.92014 0.95696 0.91358 0.91029 0.90644 0.91369 0.95525 0.89668 0.90340 0.87248 0.91786 0.76022 0.90889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.37 8.84 37.16 0.33 -2.04 16 2 C 0.14 2.14 2.35 -66.95 -0.16 1.98 16 3 H 0.08 1.35 7.29 -51.93 -0.38 0.97 16 4 C 0.07 0.87 2.21 -65.74 -0.15 0.73 16 5 H 0.06 0.67 7.85 -51.93 -0.41 0.27 16 6 N -0.54 -5.80 4.86 -240.79 -1.17 -6.97 16 7 C 0.03 0.21 9.41 60.07 0.57 0.78 16 8 C 0.02 0.16 8.30 60.06 0.50 0.66 16 9 C -0.13 -1.57 5.72 -24.45 -0.14 -1.71 16 10 C 0.11 1.73 6.06 -2.53 -0.02 1.71 16 11 N -0.60 -11.04 3.07 -163.75 -0.50 -11.54 16 12 C 0.53 11.99 7.69 -11.87 -0.09 11.90 16 13 O -0.55 -13.14 15.51 5.42 0.08 -13.05 16 14 C 0.40 10.15 7.78 -11.87 -0.09 10.05 16 15 O -0.59 -15.53 13.33 5.37 0.07 -15.46 16 16 N -0.50 -13.48 5.25 -11.59 -0.06 -13.54 16 17 C -0.31 -8.45 9.67 -15.15 -0.15 -8.59 16 18 H 0.11 3.12 7.15 -52.49 -0.38 2.74 16 19 C 0.03 0.82 5.51 -17.40 -0.10 0.72 16 20 N -0.87 -23.44 13.03 55.53 0.72 -22.72 16 21 Si 0.94 20.13 29.56 -169.99 -5.02 15.10 16 22 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 23 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 24 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 25 H 0.07 1.26 6.89 -51.93 -0.36 0.90 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.70 6.22 -51.93 -0.32 0.38 16 28 H 0.02 0.20 8.14 -51.93 -0.42 -0.23 16 29 H 0.07 0.50 8.12 -51.93 -0.42 0.08 16 30 H 0.07 0.58 7.35 -51.93 -0.38 0.20 16 31 H 0.07 0.77 5.79 -51.93 -0.30 0.47 16 32 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 33 H 0.03 0.23 8.02 -51.92 -0.42 -0.19 16 34 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.08 0.78 8.10 -51.93 -0.42 0.36 16 36 H 0.11 2.02 6.15 -51.93 -0.32 1.70 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 38 H 0.40 11.05 7.35 -40.82 -0.30 10.75 16 39 H 0.28 7.03 8.30 -40.82 -0.34 6.69 16 LS Contribution 314.71 15.07 4.74 4.74 Total: -1.00 -30.17 314.71 -6.27 -36.45 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -5.65 Total: 10.78 kcal Atomic # 6 Polarization: 15.69 SS G_CDS: 0.51 Total: 16.20 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: -1.01 Total: -54.76 kcal Atomic # 8 Polarization: -28.66 SS G_CDS: 0.16 Total: -28.51 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.17 -6.27 -36.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310575011.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.262 kcal (2) G-P(sol) polarization free energy of solvation -30.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds