Wall clock time and date at job start Mon Mar 30 2020 05:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 110.41918 * 2 1 4 4 C 1.55132 * 110.34063 * 122.44236 * 2 1 3 5 5 H 1.08997 * 111.19655 * 37.95414 * 4 2 1 6 6 N 1.46900 * 110.93896 * 274.04953 * 4 2 1 7 7 C 1.46902 * 111.00062 * 183.24602 * 6 4 2 8 8 C 1.46899 * 111.00233 * 307.20442 * 6 4 2 9 9 C 1.55158 * 101.48583 * 156.05994 * 4 2 1 10 10 C 1.54325 * 102.94322 * 324.33015 * 9 4 2 11 11 N 1.47033 * 107.26902 * 22.19531 * 10 9 4 12 12 C 1.34773 * 125.64556 * 181.02203 * 11 10 9 13 13 O 1.21443 * 119.99773 * 180.02562 * 12 11 10 14 14 C 1.48831 * 120.00297 * 0.02624 * 12 11 10 15 15 O 1.21504 * 119.99723 * 359.97438 * 14 12 11 16 16 N 1.34775 * 119.99750 * 179.97438 * 14 12 11 17 17 C 1.36125 * 119.99516 * 179.97438 * 16 14 12 18 18 H 1.07995 * 120.00273 * 0.02562 * 17 16 14 19 19 C 1.39583 * 119.99585 * 180.02562 * 17 16 14 20 20 N 1.31016 * 120.00134 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 120.00379 * 0.02562 * 19 17 16 22 22 H 1.48504 * 109.47076 * 89.99718 * 21 19 17 23 23 H 1.48504 * 109.46771 * 330.00394 * 21 19 17 24 24 H 1.48491 * 109.47246 * 209.99995 * 21 19 17 25 25 H 1.09003 * 109.47669 * 180.84182 * 1 2 3 26 26 H 1.09003 * 109.47380 * 300.84813 * 1 2 3 27 27 H 1.09005 * 109.47131 * 60.84252 * 1 2 3 28 28 H 1.09002 * 109.46658 * 60.00209 * 7 6 4 29 29 H 1.09003 * 109.47107 * 180.02562 * 7 6 4 30 30 H 1.08994 * 109.47067 * 300.00409 * 7 6 4 31 31 H 1.08998 * 109.47302 * 66.35614 * 8 6 4 32 32 H 1.09005 * 109.47443 * 186.35677 * 8 6 4 33 33 H 1.08999 * 109.47213 * 306.35863 * 8 6 4 34 34 H 1.09006 * 110.71823 * 205.96795 * 9 4 2 35 35 H 1.09001 * 110.71927 * 82.69439 * 9 4 2 36 36 H 1.09000 * 109.88486 * 262.77855 * 10 9 4 37 37 H 1.08995 * 110.01140 * 141.68332 * 10 9 4 38 38 H 0.97000 * 120.00123 * 0.02562 * 16 14 12 39 39 H 0.96993 * 120.00415 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 6 2.0692 -0.7803 1.2276 5 1 1.4548 -1.6554 1.4392 6 7 2.1608 0.0925 2.4056 7 6 2.7432 -0.6243 3.5479 8 6 2.9265 1.3088 2.1014 9 6 3.4796 -1.1973 0.7334 10 6 3.2524 -1.4726 -0.7680 11 7 2.0430 -0.7384 -1.1683 12 6 1.4972 -0.7364 -2.4005 13 8 0.4925 -0.0900 -2.6185 14 6 2.1258 -1.5262 -3.4942 15 8 3.1314 -2.1725 -3.2762 16 7 1.5797 -1.5244 -4.7264 17 6 2.1549 -2.2464 -5.7268 18 1 3.0487 -2.8209 -5.5331 19 6 1.5896 -2.2442 -7.0030 20 7 2.1435 -2.9386 -7.9660 21 14 0.0441 -1.2500 -7.3383 22 1 0.4208 0.1190 -7.7735 23 1 -0.7707 -1.1688 -6.0994 24 1 -0.7464 -1.9096 -8.4084 25 1 -0.3634 -1.0275 0.0151 26 1 -0.3634 0.5270 0.8823 27 1 -0.3634 0.5007 -0.8975 28 1 3.7447 -0.9680 3.2888 29 1 2.7991 0.0448 4.4066 30 1 2.1177 -1.4817 3.7960 31 1 2.3772 1.9128 1.3792 32 1 3.0757 1.8825 3.0161 33 1 3.8947 1.0335 1.6832 34 1 3.8161 -2.0995 1.2443 35 1 4.1929 -0.3849 0.8729 36 1 3.1089 -2.5406 -0.9315 37 1 4.1075 -1.1210 -1.3452 38 1 0.7771 -1.0081 -4.9004 39 1 1.7505 -2.9374 -8.8528 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310575012.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:23 Heat of formation + Delta-G solvation = -42.429438 kcal Electronic energy + Delta-G solvation = -21454.336142 eV Core-core repulsion = 18204.940762 eV Total energy + Delta-G solvation = -3249.395380 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.44745 -38.78023 -37.21788 -35.67698 -34.17537 -31.91213 -31.38267 -30.48577 -27.88399 -26.23890 -25.73714 -23.77009 -23.18732 -21.36493 -19.79853 -19.20044 -18.24306 -16.98888 -16.47449 -15.79855 -15.23506 -15.03355 -14.91769 -14.52968 -14.13426 -14.00679 -13.81357 -13.30737 -13.01740 -12.82862 -12.51320 -12.42747 -12.32984 -12.02122 -11.90983 -11.82907 -11.66012 -11.28173 -11.25628 -11.07976 -10.68195 -10.62916 -10.26021 -9.98223 -9.75923 -8.56602 -8.43331 -8.29828 -8.27141 -6.58078 -3.99742 2.30492 3.00200 3.05918 3.09324 3.11802 3.75617 3.96324 4.13812 4.33686 4.58394 4.75997 4.81895 4.95447 5.02657 5.13055 5.22590 5.27050 5.29334 5.41193 5.43758 5.61317 5.63792 5.68373 5.75194 5.87628 5.92920 6.14857 6.19005 6.22184 6.40690 6.67694 6.77495 6.83428 7.27705 7.70282 7.89075 8.20215 8.51145 8.75310 9.20147 9.62398 10.52081 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.039868 B = 0.004537 C = 0.004204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.148869 B = 6170.076018 C = 6658.266197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.138 3.862 3 H 0.079 0.921 4 C 0.074 3.926 5 H 0.101 0.899 6 N -0.532 5.532 7 C 0.024 3.976 8 C 0.010 3.990 9 C -0.174 4.174 10 C 0.121 3.879 11 N -0.598 5.598 12 C 0.531 3.469 13 O -0.545 6.545 14 C 0.407 3.593 15 O -0.573 6.573 16 N -0.528 5.528 17 C -0.308 4.308 18 H 0.127 0.873 19 C 0.053 3.947 20 N -0.851 5.851 21 Si 0.875 3.125 22 H -0.264 1.264 23 H -0.259 1.259 24 H -0.271 1.271 25 H 0.052 0.948 26 H 0.063 0.937 27 H 0.086 0.914 28 H 0.030 0.970 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.036 0.964 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.383 0.617 39 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.220 6.099 18.800 19.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.035 3.965 3 H 0.097 0.903 4 C -0.035 4.035 5 H 0.119 0.881 6 N -0.254 5.254 7 C -0.124 4.124 8 C -0.138 4.138 9 C -0.213 4.213 10 C -0.002 4.002 11 N -0.334 5.334 12 C 0.317 3.683 13 O -0.423 6.423 14 C 0.192 3.808 15 O -0.459 6.459 16 N -0.165 5.165 17 C -0.438 4.438 18 H 0.144 0.856 19 C -0.155 4.155 20 N -0.488 5.488 21 Si 0.700 3.300 22 H -0.189 1.189 23 H -0.184 1.184 24 H -0.196 1.196 25 H 0.072 0.928 26 H 0.082 0.918 27 H 0.105 0.895 28 H 0.048 0.952 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.054 0.946 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.218 0.782 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.611 6.089 18.655 19.633 hybrid contribution -0.196 0.362 -0.630 0.753 sum -0.807 6.451 18.025 19.161 Atomic orbital electron populations 1.22120 0.93374 1.02656 1.03580 1.21995 0.95815 0.95281 0.83421 0.90294 1.23092 0.95604 0.95672 0.89176 0.88117 1.62097 1.51671 1.06449 1.05199 1.22378 0.97887 0.98952 0.93209 1.22587 0.96693 0.92607 1.01867 1.23420 0.98721 1.02488 0.96703 1.21941 0.87672 0.97926 0.92686 1.48181 1.28260 1.48426 1.08534 1.20363 0.83677 0.81730 0.82488 1.90621 1.25380 1.44279 1.82053 1.18778 0.88697 0.89634 0.83692 1.90606 1.26507 1.47180 1.81642 1.41807 1.25085 1.41169 1.08488 1.19539 1.11863 1.25084 0.87290 0.85550 1.25220 0.98343 0.96823 0.95162 1.69438 1.39384 1.37531 1.02460 0.86683 0.82742 0.80942 0.79633 1.18920 1.18420 1.19554 0.92839 0.91766 0.89496 0.95181 0.91355 0.91299 0.90798 0.91365 0.94601 0.90055 0.90380 0.90221 0.90445 0.78182 0.90811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 8.71 37.15 0.32 -1.96 16 2 C 0.14 1.94 3.20 -66.30 -0.21 1.73 16 3 H 0.08 1.08 5.66 -51.93 -0.29 0.79 16 4 C 0.07 0.84 2.65 -65.44 -0.17 0.67 16 5 H 0.10 1.17 8.07 -51.93 -0.42 0.75 16 6 N -0.53 -5.21 5.10 -240.43 -1.23 -6.44 16 7 C 0.02 0.19 9.39 60.07 0.56 0.75 16 8 C 0.01 0.09 8.84 60.06 0.53 0.62 16 9 C -0.17 -1.95 5.30 -24.89 -0.13 -2.08 16 10 C 0.12 1.87 5.49 -3.06 -0.02 1.86 16 11 N -0.60 -10.40 3.24 -163.64 -0.53 -10.93 16 12 C 0.53 11.25 7.68 -11.88 -0.09 11.16 16 13 O -0.55 -12.02 14.12 5.42 0.08 -11.94 16 14 C 0.41 9.95 7.78 -11.88 -0.09 9.86 16 15 O -0.57 -14.91 13.66 5.36 0.07 -14.83 16 16 N -0.53 -13.44 5.06 -11.59 -0.06 -13.49 16 17 C -0.31 -8.62 10.16 -15.14 -0.15 -8.78 16 18 H 0.13 3.93 7.36 -52.49 -0.39 3.54 16 19 C 0.05 1.41 5.51 -17.40 -0.10 1.31 16 20 N -0.85 -23.74 13.94 55.53 0.77 -22.97 16 21 Si 0.88 19.47 27.74 -169.99 -4.72 14.76 16 22 H -0.26 -5.76 7.11 56.52 0.40 -5.36 16 23 H -0.26 -5.61 6.53 56.52 0.37 -5.24 16 24 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 25 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.09 1.45 5.89 -51.93 -0.31 1.15 16 28 H 0.03 0.22 7.28 -51.93 -0.38 -0.15 16 29 H 0.07 0.45 8.05 -51.93 -0.42 0.04 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.70 6.25 -51.93 -0.32 0.37 16 32 H 0.07 0.50 8.01 -51.93 -0.42 0.09 16 33 H 0.04 0.32 5.77 -51.93 -0.30 0.02 16 34 H 0.08 0.79 8.09 -51.93 -0.42 0.37 16 35 H 0.08 0.82 5.73 -51.93 -0.30 0.52 16 36 H 0.08 1.34 7.58 -51.93 -0.39 0.94 16 37 H 0.08 1.30 7.68 -51.93 -0.40 0.90 16 38 H 0.38 9.20 5.22 -40.82 -0.21 8.99 16 39 H 0.28 7.17 8.30 -40.82 -0.34 6.83 16 LS Contribution 307.68 15.07 4.64 4.64 Total: -1.00 -30.27 307.68 -5.92 -36.19 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -5.40 Total: 9.88 kcal Atomic # 6 Polarization: 14.69 SS G_CDS: 0.45 Total: 15.14 kcal Atomic # 7 Polarization: -52.79 SS G_CDS: -1.04 Total: -53.83 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: 0.15 Total: -26.77 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -4.72 Total: 14.76 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.27 -5.92 -36.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310575012.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.241 kcal (2) G-P(sol) polarization free energy of solvation -30.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds