Wall clock time and date at job start Mon Mar 30 2020 05:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 110.41918 * 2 1 4 4 C 1.55132 * 110.34063 * 122.44236 * 2 1 3 5 5 H 1.08997 * 111.19655 * 37.95414 * 4 2 1 6 6 N 1.46900 * 110.93896 * 274.04953 * 4 2 1 7 7 C 1.46902 * 111.00062 * 183.24602 * 6 4 2 8 8 C 1.46899 * 111.00233 * 307.20442 * 6 4 2 9 9 C 1.55158 * 101.48583 * 156.05994 * 4 2 1 10 10 C 1.54325 * 102.94322 * 324.33015 * 9 4 2 11 11 N 1.47033 * 107.26902 * 22.19531 * 10 9 4 12 12 C 1.34773 * 125.64556 * 181.02203 * 11 10 9 13 13 O 1.21443 * 119.99773 * 180.02562 * 12 11 10 14 14 C 1.48831 * 120.00297 * 0.02624 * 12 11 10 15 15 O 1.21504 * 119.99723 * 359.97438 * 14 12 11 16 16 N 1.34775 * 119.99750 * 179.97438 * 14 12 11 17 17 C 1.36125 * 119.99516 * 179.97438 * 16 14 12 18 18 H 1.07995 * 120.00273 * 0.02562 * 17 16 14 19 19 C 1.39583 * 119.99585 * 180.02562 * 17 16 14 20 20 N 1.31016 * 120.00134 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 120.00379 * 0.02562 * 19 17 16 22 22 H 1.48504 * 109.47076 * 89.99718 * 21 19 17 23 23 H 1.48504 * 109.46771 * 330.00394 * 21 19 17 24 24 H 1.48491 * 109.47246 * 209.99995 * 21 19 17 25 25 H 1.09003 * 109.47669 * 180.84182 * 1 2 3 26 26 H 1.09003 * 109.47380 * 300.84813 * 1 2 3 27 27 H 1.09005 * 109.47131 * 60.84252 * 1 2 3 28 28 H 1.09002 * 109.46658 * 60.00209 * 7 6 4 29 29 H 1.09003 * 109.47107 * 180.02562 * 7 6 4 30 30 H 1.08994 * 109.47067 * 300.00409 * 7 6 4 31 31 H 1.08998 * 109.47302 * 66.35614 * 8 6 4 32 32 H 1.09005 * 109.47443 * 186.35677 * 8 6 4 33 33 H 1.08999 * 109.47213 * 306.35863 * 8 6 4 34 34 H 1.09006 * 110.71823 * 205.96795 * 9 4 2 35 35 H 1.09001 * 110.71927 * 82.69439 * 9 4 2 36 36 H 1.09000 * 109.88486 * 262.77855 * 10 9 4 37 37 H 1.08995 * 110.01140 * 141.68332 * 10 9 4 38 38 H 0.97000 * 120.00123 * 0.02562 * 16 14 12 39 39 H 0.96993 * 120.00415 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 6 2.0692 -0.7803 1.2276 5 1 1.4548 -1.6554 1.4392 6 7 2.1608 0.0925 2.4056 7 6 2.7432 -0.6243 3.5479 8 6 2.9265 1.3088 2.1014 9 6 3.4796 -1.1973 0.7334 10 6 3.2524 -1.4726 -0.7680 11 7 2.0430 -0.7384 -1.1683 12 6 1.4972 -0.7364 -2.4005 13 8 0.4925 -0.0900 -2.6185 14 6 2.1258 -1.5262 -3.4942 15 8 3.1314 -2.1725 -3.2762 16 7 1.5797 -1.5244 -4.7264 17 6 2.1549 -2.2464 -5.7268 18 1 3.0487 -2.8209 -5.5331 19 6 1.5896 -2.2442 -7.0030 20 7 2.1435 -2.9386 -7.9660 21 14 0.0441 -1.2500 -7.3383 22 1 0.4208 0.1190 -7.7735 23 1 -0.7707 -1.1688 -6.0994 24 1 -0.7464 -1.9096 -8.4084 25 1 -0.3634 -1.0275 0.0151 26 1 -0.3634 0.5270 0.8823 27 1 -0.3634 0.5007 -0.8975 28 1 3.7447 -0.9680 3.2888 29 1 2.7991 0.0448 4.4066 30 1 2.1177 -1.4817 3.7960 31 1 2.3772 1.9128 1.3792 32 1 3.0757 1.8825 3.0161 33 1 3.8947 1.0335 1.6832 34 1 3.8161 -2.0995 1.2443 35 1 4.1929 -0.3849 0.8729 36 1 3.1089 -2.5406 -0.9315 37 1 4.1075 -1.1210 -1.3452 38 1 0.7771 -1.0081 -4.9004 39 1 1.7505 -2.9374 -8.8528 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310575012.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:22 Heat of formation + Delta-G solvation = -66.001465 kcal Electronic energy + Delta-G solvation = -21455.358302 eV Core-core repulsion = 18204.940762 eV Total energy + Delta-G solvation = -3250.417540 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.87807 -40.28171 -38.92508 -36.95660 -36.08702 -33.97342 -32.55849 -31.72118 -28.52798 -28.03681 -26.91777 -25.29652 -24.23960 -22.86652 -21.29163 -20.74842 -19.91900 -18.29530 -18.12061 -17.42574 -16.83564 -16.53273 -16.01090 -15.71622 -15.35261 -15.17332 -15.10912 -14.98838 -14.57013 -14.48488 -14.32290 -13.76036 -13.17430 -13.10964 -12.98288 -12.95078 -12.73857 -12.57079 -12.50904 -12.37091 -12.27805 -12.05299 -11.81074 -11.69528 -11.48135 -10.48226 -10.14591 -9.81382 -9.23674 -8.63215 -6.16859 0.50404 1.27560 1.31519 1.37407 1.52640 2.09153 2.25607 2.82106 2.93346 3.05456 3.44510 3.59298 3.77601 3.87731 4.07402 4.14653 4.29033 4.41735 4.50831 4.54394 4.68045 4.73322 4.80414 4.88348 4.95836 5.02150 5.04268 5.11636 5.17951 5.20687 5.27245 5.47491 5.72984 5.99800 6.05658 6.14983 6.28162 6.55052 6.83438 7.14322 7.61588 8.51368 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.039868 B = 0.004537 C = 0.004204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.148869 B = 6170.076018 C = 6658.266197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.131 3.869 3 H 0.089 0.911 4 C 0.087 3.913 5 H 0.103 0.897 6 N -0.536 5.536 7 C 0.022 3.978 8 C 0.008 3.992 9 C -0.157 4.157 10 C 0.115 3.885 11 N -0.590 5.590 12 C 0.533 3.467 13 O -0.554 6.554 14 C 0.408 3.592 15 O -0.593 6.593 16 N -0.534 5.534 17 C -0.338 4.338 18 H 0.078 0.922 19 C 0.012 3.988 20 N -0.893 5.893 21 Si 0.947 3.053 22 H -0.252 1.252 23 H -0.249 1.249 24 H -0.256 1.256 25 H 0.046 0.954 26 H 0.088 0.912 27 H 0.061 0.939 28 H 0.035 0.965 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.037 0.963 34 H 0.103 0.897 35 H 0.091 0.909 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.392 0.608 39 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.269 7.576 21.208 22.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.029 3.971 3 H 0.107 0.893 4 C -0.023 4.023 5 H 0.121 0.879 6 N -0.259 5.259 7 C -0.125 4.125 8 C -0.140 4.140 9 C -0.196 4.196 10 C -0.008 4.008 11 N -0.324 5.324 12 C 0.318 3.682 13 O -0.433 6.433 14 C 0.193 3.807 15 O -0.480 6.480 16 N -0.172 5.172 17 C -0.467 4.467 18 H 0.096 0.904 19 C -0.193 4.193 20 N -0.530 5.530 21 Si 0.767 3.233 22 H -0.176 1.176 23 H -0.174 1.174 24 H -0.180 1.180 25 H 0.065 0.935 26 H 0.107 0.893 27 H 0.080 0.920 28 H 0.054 0.946 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.104 0.896 33 H 0.055 0.945 34 H 0.121 0.879 35 H 0.110 0.890 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.228 0.772 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.635 7.561 21.102 22.475 hybrid contribution 0.256 -0.115 -1.211 1.243 sum -1.379 7.446 19.891 21.284 Atomic orbital electron populations 1.22026 0.93326 1.02213 1.03439 1.22309 0.95929 0.95805 0.83057 0.89316 1.22934 0.95159 0.95477 0.88764 0.87932 1.62121 1.52527 1.06506 1.04715 1.22462 0.98078 0.99323 0.92680 1.22639 0.96369 0.92293 1.02670 1.23365 0.99208 1.04043 0.93015 1.22040 0.86279 0.96671 0.95774 1.48270 1.28295 1.47746 1.08109 1.19632 0.83765 0.81749 0.83066 1.90626 1.25582 1.44633 1.82462 1.19585 0.88086 0.88788 0.84282 1.90588 1.27371 1.47726 1.82297 1.41681 1.25564 1.41591 1.08413 1.19150 1.11670 1.26766 0.89108 0.90400 1.26049 1.01686 0.97494 0.94087 1.69541 1.41325 1.38897 1.03254 0.85608 0.78080 0.79534 0.80111 1.17621 1.17362 1.17993 0.93481 0.89350 0.91977 0.94617 0.89937 0.90906 0.91573 0.89565 0.94497 0.87872 0.89040 0.91867 0.92064 0.77205 0.89939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.08 8.71 71.98 0.63 -3.45 16 2 C 0.13 3.41 3.20 45.54 0.15 3.56 16 3 H 0.09 2.22 5.66 -2.39 -0.01 2.20 16 4 C 0.09 1.72 2.65 46.39 0.12 1.84 16 5 H 0.10 2.07 8.07 -2.39 -0.02 2.05 16 6 N -0.54 -8.59 5.10 -914.59 -4.67 -13.26 16 7 C 0.02 0.26 9.39 127.69 1.20 1.46 16 8 C 0.01 0.11 8.84 127.69 1.13 1.24 16 9 C -0.16 -3.11 5.30 31.78 0.17 -2.94 16 10 C 0.12 3.50 5.49 86.73 0.48 3.98 16 11 N -0.59 -20.10 3.24 -789.97 -2.56 -22.66 16 12 C 0.53 22.62 7.68 87.08 0.67 23.28 16 13 O -0.55 -24.11 14.12 -3.54 -0.05 -24.16 16 14 C 0.41 20.45 7.78 87.08 0.68 21.13 16 15 O -0.59 -32.11 13.66 -3.73 -0.05 -32.16 16 16 N -0.53 -27.81 5.06 -308.87 -1.56 -29.37 16 17 C -0.34 -19.75 10.16 84.35 0.86 -18.89 16 18 H 0.08 5.20 7.36 -2.91 -0.02 5.18 16 19 C 0.01 0.64 5.51 85.14 0.47 1.11 16 20 N -0.89 -51.17 13.94 21.76 0.30 -50.87 16 21 Si 0.95 39.94 27.74 68.60 1.90 41.85 16 22 H -0.25 -10.14 7.11 99.48 0.71 -9.43 16 23 H -0.25 -10.05 6.53 99.48 0.65 -9.40 16 24 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 25 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.09 1.92 8.14 -2.39 -0.02 1.91 16 27 H 0.06 2.00 5.89 -2.38 -0.01 1.99 16 28 H 0.04 0.39 7.28 -2.39 -0.02 0.37 16 29 H 0.08 0.76 8.05 -2.39 -0.02 0.74 16 30 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.07 1.05 6.25 -2.39 -0.01 1.04 16 32 H 0.09 0.94 8.01 -2.38 -0.02 0.92 16 33 H 0.04 0.53 5.77 -2.39 -0.01 0.51 16 34 H 0.10 1.67 8.09 -2.38 -0.02 1.65 16 35 H 0.09 1.62 5.73 -2.39 -0.01 1.61 16 36 H 0.06 2.14 7.58 -2.39 -0.02 2.12 16 37 H 0.06 2.06 7.68 -2.39 -0.02 2.05 16 38 H 0.39 18.79 5.22 -92.71 -0.48 18.31 16 39 H 0.29 14.99 8.30 -92.71 -0.77 14.22 16 Total: -1.00 -68.03 307.68 0.39 -67.64 By element: Atomic # 1 Polarization: 30.14 SS G_CDS: 0.53 Total: 30.67 kcal Atomic # 6 Polarization: 25.79 SS G_CDS: 6.54 Total: 32.33 kcal Atomic # 7 Polarization: -107.68 SS G_CDS: -8.49 Total: -116.16 kcal Atomic # 8 Polarization: -56.22 SS G_CDS: -0.10 Total: -56.32 kcal Atomic # 14 Polarization: 39.94 SS G_CDS: 1.90 Total: 41.85 kcal Total: -68.03 0.39 -67.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310575012.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.641 kcal (2) G-P(sol) polarization free energy of solvation -68.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds