Wall clock time and date at job start Mon Mar 30 2020 05:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.87792 * 2 1 4 4 C 1.54324 * 109.88278 * 121.17464 * 2 1 3 5 5 H 1.09003 * 110.72066 * 215.58404 * 4 2 1 6 6 N 1.46898 * 110.72106 * 338.85894 * 4 2 1 7 7 C 1.46903 * 111.00039 * 165.11088 * 6 4 2 8 8 C 1.46900 * 110.99931 * 289.07003 * 6 4 2 9 9 C 1.55156 * 102.94284 * 97.22357 * 4 2 1 10 10 C 1.54694 * 101.67962 * 35.33516 * 9 4 2 11 11 N 1.47020 * 109.88072 * 238.98125 * 2 1 3 12 12 C 1.34770 * 125.64966 * 59.48976 * 11 2 1 13 13 O 1.21438 * 120.00021 * 359.97438 * 12 11 2 14 14 C 1.48835 * 120.00378 * 179.97438 * 12 11 2 15 15 O 1.21502 * 119.99516 * 359.97438 * 14 12 11 16 16 N 1.34770 * 120.00365 * 179.97438 * 14 12 11 17 17 C 1.36120 * 120.00284 * 179.97438 * 16 14 12 18 18 H 1.07996 * 119.99667 * 359.73571 * 17 16 14 19 19 C 1.39583 * 120.00184 * 179.72639 * 17 16 14 20 20 N 1.31015 * 120.00018 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00069 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47119 * 90.00228 * 21 19 17 23 23 H 1.48503 * 109.46819 * 209.99979 * 21 19 17 24 24 H 1.48497 * 109.46703 * 329.99950 * 21 19 17 25 25 H 1.09009 * 109.47165 * 187.84600 * 1 2 3 26 26 H 1.08998 * 109.46929 * 307.83597 * 1 2 3 27 27 H 1.08994 * 109.47244 * 67.84222 * 1 2 3 28 28 H 1.09006 * 109.46604 * 60.00650 * 7 6 4 29 29 H 1.09001 * 109.47244 * 179.97438 * 7 6 4 30 30 H 1.08991 * 109.47782 * 300.00116 * 7 6 4 31 31 H 1.08990 * 109.47133 * 53.00535 * 8 6 4 32 32 H 1.09010 * 109.46826 * 173.00335 * 8 6 4 33 33 H 1.09004 * 109.46738 * 292.99967 * 8 6 4 34 34 H 1.09002 * 111.00506 * 153.57528 * 9 4 2 35 35 H 1.08997 * 111.00663 * 277.38797 * 9 4 2 36 36 H 1.08992 * 110.39286 * 204.36542 * 10 9 4 37 37 H 1.08997 * 110.23443 * 82.10767 * 10 9 4 38 38 H 0.97001 * 119.99801 * 359.73117 * 16 14 12 39 39 H 0.97007 * 120.00066 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0548 -0.7512 1.2417 5 1 2.9657 -0.2854 1.6178 6 7 1.0265 -0.8059 2.2893 7 6 1.3714 -1.8002 3.3142 8 6 0.8160 0.5181 2.8899 9 6 2.3518 -2.1704 0.6894 10 6 2.8523 -1.8521 -0.7393 11 7 2.0299 -0.7125 -1.1849 12 6 1.7742 -0.3820 -2.4661 13 8 1.0753 0.5788 -2.7175 14 6 2.3482 -1.1945 -3.5732 15 8 3.0479 -2.1555 -3.3217 16 7 2.0921 -0.8643 -4.8544 17 6 2.6175 -1.6071 -5.8669 18 1 3.2432 -2.4585 -5.6434 19 6 2.3475 -1.2685 -7.1938 20 7 1.5888 -0.2354 -7.4649 21 14 3.0680 -2.2883 -8.5832 22 1 2.1283 -3.3838 -8.9319 23 1 3.2835 -1.4239 -9.7714 24 1 4.3652 -2.8676 -8.1507 25 1 -0.3634 -1.0181 0.1403 26 1 -0.3633 0.6304 0.8116 27 1 -0.3633 0.3876 -0.9517 28 1 2.3237 -1.5338 3.7728 29 1 0.5937 -1.8198 4.0777 30 1 1.4529 -2.7843 2.8529 31 1 0.6152 1.2459 2.1038 32 1 -0.0331 0.4767 3.5723 33 1 1.7097 0.8140 3.4394 34 1 3.1270 -2.6636 1.2759 35 1 1.4453 -2.7748 0.6572 36 1 2.6997 -2.7093 -1.3949 37 1 3.9058 -1.5736 -0.7164 38 1 1.5304 -0.0994 -5.0551 39 1 1.4014 0.0002 -8.3871 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310575013.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:25 Heat of formation + Delta-G solvation = -48.558181 kcal Electronic energy + Delta-G solvation = -21365.449170 eV Core-core repulsion = 18115.788028 eV Total energy + Delta-G solvation = -3249.661142 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.23509 -38.56872 -37.00025 -35.67829 -34.14512 -31.44356 -31.26012 -30.46665 -27.55570 -26.09571 -25.76020 -23.86637 -22.83529 -21.54202 -19.63836 -18.67596 -18.07471 -16.81495 -16.17914 -15.91883 -15.21616 -15.06618 -14.83554 -14.64916 -14.04053 -13.90020 -13.67645 -13.01279 -12.86931 -12.66522 -12.48353 -12.25530 -12.17601 -11.91891 -11.76014 -11.72134 -11.23312 -11.18964 -11.08027 -10.83049 -10.49077 -10.47885 -10.38720 -10.06063 -9.69507 -8.51933 -8.30470 -8.19393 -8.05861 -6.64774 -3.97286 2.49295 3.12250 3.16204 3.19649 3.27293 3.82156 4.06657 4.29988 4.39909 4.71340 4.96593 4.98350 5.06377 5.16025 5.21071 5.28289 5.36692 5.41244 5.52565 5.61297 5.68546 5.73165 5.75704 5.80547 6.01408 6.07899 6.28893 6.32112 6.37476 6.62119 6.78247 6.87599 6.91164 7.33002 7.76399 7.89374 8.33371 8.63602 8.98490 9.34712 9.87563 10.50194 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.045256 B = 0.004150 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.552584 B = 6744.744042 C = 7209.635686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.144 3.856 3 H 0.067 0.933 4 C 0.072 3.928 5 H 0.057 0.943 6 N -0.532 5.532 7 C 0.024 3.976 8 C 0.017 3.983 9 C -0.130 4.130 10 C 0.107 3.893 11 N -0.597 5.597 12 C 0.529 3.471 13 O -0.544 6.544 14 C 0.399 3.601 15 O -0.592 6.592 16 N -0.500 5.500 17 C -0.306 4.306 18 H 0.112 0.888 19 C 0.031 3.969 20 N -0.870 5.870 21 Si 0.939 3.061 22 H -0.274 1.274 23 H -0.280 1.280 24 H -0.265 1.265 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.024 0.976 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.024 0.976 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.109 0.891 37 H 0.064 0.936 38 H 0.404 0.596 39 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.200 -0.852 17.561 17.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.040 3.960 3 H 0.085 0.915 4 C -0.037 4.037 5 H 0.075 0.925 6 N -0.255 5.255 7 C -0.124 4.124 8 C -0.131 4.131 9 C -0.168 4.168 10 C -0.016 4.016 11 N -0.332 5.332 12 C 0.316 3.684 13 O -0.421 6.421 14 C 0.183 3.817 15 O -0.481 6.481 16 N -0.134 5.134 17 C -0.436 4.436 18 H 0.130 0.870 19 C -0.176 4.176 20 N -0.508 5.508 21 Si 0.764 3.236 22 H -0.199 1.199 23 H -0.206 1.206 24 H -0.189 1.189 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.042 0.958 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.043 0.957 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.127 0.873 37 H 0.082 0.918 38 H 0.240 0.760 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.647 -0.966 17.097 17.137 hybrid contribution 0.781 0.368 -0.311 0.917 sum 0.134 -0.598 16.787 16.798 Atomic orbital electron populations 1.21991 0.93796 1.02697 1.02032 1.21418 0.95859 0.95048 0.83716 0.91466 1.22713 0.92423 0.97170 0.91423 0.92547 1.62000 1.44149 1.07282 1.12109 1.22399 0.99191 0.96414 0.94401 1.22540 1.00330 0.90660 0.99529 1.22972 1.02063 0.95622 0.96181 1.22453 0.94274 0.90862 0.93992 1.48151 1.50698 1.30263 1.04125 1.20413 0.80683 0.84670 0.82608 1.90673 1.38801 1.29155 1.83508 1.18878 0.90015 0.89163 0.83628 1.90517 1.43815 1.31035 1.82691 1.41544 1.41207 1.26990 1.03670 1.19863 1.28387 1.11115 0.84250 0.86992 1.25577 0.96278 0.96648 0.99090 1.69489 1.34328 1.25201 1.21747 0.85729 0.79631 0.79079 0.79152 1.19917 1.20554 1.18924 0.92025 0.91809 0.91778 0.95773 0.91453 0.90874 0.90639 0.91254 0.95737 0.90296 0.89716 0.87335 0.91758 0.76021 0.90955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 8.27 37.16 0.31 -1.90 16 2 C 0.14 2.18 2.88 -66.95 -0.19 1.98 16 3 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 4 C 0.07 0.85 2.53 -65.88 -0.17 0.69 16 5 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 6 N -0.53 -5.53 3.75 -240.95 -0.90 -6.43 16 7 C 0.02 0.20 9.22 60.07 0.55 0.75 16 8 C 0.02 0.16 8.79 60.06 0.53 0.68 16 9 C -0.13 -1.56 5.06 -24.70 -0.13 -1.68 16 10 C 0.11 1.72 6.04 -2.64 -0.02 1.71 16 11 N -0.60 -11.04 3.08 -163.89 -0.51 -11.55 16 12 C 0.53 12.01 7.66 -11.88 -0.09 11.92 16 13 O -0.54 -13.17 15.27 5.42 0.08 -13.08 16 14 C 0.40 10.16 7.78 -11.88 -0.09 10.07 16 15 O -0.59 -15.55 13.33 5.36 0.07 -15.48 16 16 N -0.50 -13.51 5.25 -11.59 -0.06 -13.57 16 17 C -0.31 -8.44 9.67 -15.15 -0.15 -8.59 16 18 H 0.11 3.14 7.15 -52.49 -0.38 2.76 16 19 C 0.03 0.81 5.51 -17.40 -0.10 0.71 16 20 N -0.87 -23.48 13.03 55.53 0.72 -22.75 16 21 Si 0.94 20.14 29.56 -169.99 -5.02 15.12 16 22 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 23 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 24 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 25 H 0.06 0.94 8.02 -51.92 -0.42 0.52 16 26 H 0.06 0.81 5.49 -51.93 -0.29 0.53 16 27 H 0.06 1.15 6.51 -51.93 -0.34 0.81 16 28 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.60 6.76 -51.93 -0.35 0.25 16 31 H 0.07 0.72 5.74 -51.93 -0.30 0.42 16 32 H 0.07 0.54 8.14 -51.92 -0.42 0.11 16 33 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.08 0.76 8.12 -51.93 -0.42 0.34 16 35 H 0.08 1.05 7.91 -51.93 -0.41 0.64 16 36 H 0.11 2.00 6.17 -51.93 -0.32 1.68 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.40 11.07 7.35 -40.82 -0.30 10.77 16 39 H 0.28 7.01 8.30 -40.82 -0.34 6.67 16 LS Contribution 312.50 15.07 4.71 4.71 Total: -1.00 -30.19 312.50 -6.05 -36.25 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -5.61 Total: 10.45 kcal Atomic # 6 Polarization: 15.88 SS G_CDS: 0.46 Total: 16.34 kcal Atomic # 7 Polarization: -53.56 SS G_CDS: -0.74 Total: -54.30 kcal Atomic # 8 Polarization: -28.71 SS G_CDS: 0.15 Total: -28.56 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.19 -6.05 -36.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310575013.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.311 kcal (2) G-P(sol) polarization free energy of solvation -30.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds