Wall clock time and date at job start Mon Mar 30 2020 05:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.87792 * 2 1 4 4 C 1.54324 * 109.88278 * 121.17464 * 2 1 3 5 5 H 1.09003 * 110.72066 * 215.58404 * 4 2 1 6 6 N 1.46898 * 110.72106 * 338.85894 * 4 2 1 7 7 C 1.46903 * 111.00039 * 165.11088 * 6 4 2 8 8 C 1.46900 * 110.99931 * 289.07003 * 6 4 2 9 9 C 1.55156 * 102.94284 * 97.22357 * 4 2 1 10 10 C 1.54694 * 101.67962 * 35.33516 * 9 4 2 11 11 N 1.47020 * 109.88072 * 238.98125 * 2 1 3 12 12 C 1.34770 * 125.64966 * 59.48976 * 11 2 1 13 13 O 1.21438 * 120.00021 * 359.97438 * 12 11 2 14 14 C 1.48835 * 120.00378 * 179.97438 * 12 11 2 15 15 O 1.21502 * 119.99516 * 359.97438 * 14 12 11 16 16 N 1.34770 * 120.00365 * 179.97438 * 14 12 11 17 17 C 1.36120 * 120.00284 * 179.97438 * 16 14 12 18 18 H 1.07996 * 119.99667 * 359.73571 * 17 16 14 19 19 C 1.39583 * 120.00184 * 179.72639 * 17 16 14 20 20 N 1.31015 * 120.00018 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00069 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47119 * 90.00228 * 21 19 17 23 23 H 1.48503 * 109.46819 * 209.99979 * 21 19 17 24 24 H 1.48497 * 109.46703 * 329.99950 * 21 19 17 25 25 H 1.09009 * 109.47165 * 187.84600 * 1 2 3 26 26 H 1.08998 * 109.46929 * 307.83597 * 1 2 3 27 27 H 1.08994 * 109.47244 * 67.84222 * 1 2 3 28 28 H 1.09006 * 109.46604 * 60.00650 * 7 6 4 29 29 H 1.09001 * 109.47244 * 179.97438 * 7 6 4 30 30 H 1.08991 * 109.47782 * 300.00116 * 7 6 4 31 31 H 1.08990 * 109.47133 * 53.00535 * 8 6 4 32 32 H 1.09010 * 109.46826 * 173.00335 * 8 6 4 33 33 H 1.09004 * 109.46738 * 292.99967 * 8 6 4 34 34 H 1.09002 * 111.00506 * 153.57528 * 9 4 2 35 35 H 1.08997 * 111.00663 * 277.38797 * 9 4 2 36 36 H 1.08992 * 110.39286 * 204.36542 * 10 9 4 37 37 H 1.08997 * 110.23443 * 82.10767 * 10 9 4 38 38 H 0.97001 * 119.99801 * 359.73117 * 16 14 12 39 39 H 0.97007 * 120.00066 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0548 -0.7512 1.2417 5 1 2.9657 -0.2854 1.6178 6 7 1.0265 -0.8059 2.2893 7 6 1.3714 -1.8002 3.3142 8 6 0.8160 0.5181 2.8899 9 6 2.3518 -2.1704 0.6894 10 6 2.8523 -1.8521 -0.7393 11 7 2.0299 -0.7125 -1.1849 12 6 1.7742 -0.3820 -2.4661 13 8 1.0753 0.5788 -2.7175 14 6 2.3482 -1.1945 -3.5732 15 8 3.0479 -2.1555 -3.3217 16 7 2.0921 -0.8643 -4.8544 17 6 2.6175 -1.6071 -5.8669 18 1 3.2432 -2.4585 -5.6434 19 6 2.3475 -1.2685 -7.1938 20 7 1.5888 -0.2354 -7.4649 21 14 3.0680 -2.2883 -8.5832 22 1 2.1283 -3.3838 -8.9319 23 1 3.2835 -1.4239 -9.7714 24 1 4.3652 -2.8676 -8.1507 25 1 -0.3634 -1.0181 0.1403 26 1 -0.3633 0.6304 0.8116 27 1 -0.3633 0.3876 -0.9517 28 1 2.3237 -1.5338 3.7728 29 1 0.5937 -1.8198 4.0777 30 1 1.4529 -2.7843 2.8529 31 1 0.6152 1.2459 2.1038 32 1 -0.0331 0.4767 3.5723 33 1 1.7097 0.8140 3.4394 34 1 3.1270 -2.6636 1.2759 35 1 1.4453 -2.7748 0.6572 36 1 2.6997 -2.7093 -1.3949 37 1 3.9058 -1.5736 -0.7164 38 1 1.5304 -0.0994 -5.0551 39 1 1.4014 0.0002 -8.3871 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310575013.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:25 Heat of formation + Delta-G solvation = -70.627269 kcal Electronic energy + Delta-G solvation = -21366.406158 eV Core-core repulsion = 18115.788028 eV Total energy + Delta-G solvation = -3250.618130 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.73512 -40.11491 -38.78766 -36.97239 -36.08344 -33.48071 -32.44094 -31.81062 -28.27902 -27.89979 -27.02290 -25.48258 -23.85032 -23.03754 -21.00256 -20.39543 -19.84919 -18.43680 -17.77461 -17.28568 -16.83615 -16.61039 -16.04217 -15.79765 -15.48477 -15.34075 -15.25019 -14.59524 -14.42514 -13.97940 -13.68150 -13.44440 -13.34755 -13.20702 -13.08579 -12.95737 -12.63626 -12.56449 -12.34676 -12.12930 -12.09758 -12.02272 -11.70857 -11.60384 -11.57604 -10.27057 -10.07622 -9.75061 -9.26803 -8.64931 -6.09878 0.60911 1.40205 1.47203 1.54290 1.67021 2.27299 2.36684 2.95689 3.07209 3.15910 3.47652 3.60367 3.98629 4.05407 4.24608 4.25140 4.32961 4.43406 4.54649 4.64515 4.67719 4.72883 4.81610 4.92412 4.98893 5.02186 5.12388 5.13594 5.19519 5.25832 5.37144 5.46156 5.69721 6.07454 6.10731 6.22889 6.34508 6.76405 6.97887 7.29060 7.80704 8.51154 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.045256 B = 0.004150 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.552584 B = 6744.744042 C = 7209.635686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.134 3.866 3 H 0.066 0.934 4 C 0.086 3.914 5 H 0.071 0.929 6 N -0.544 5.544 7 C 0.024 3.976 8 C 0.017 3.983 9 C -0.114 4.114 10 C 0.099 3.901 11 N -0.589 5.589 12 C 0.528 3.472 13 O -0.567 6.567 14 C 0.394 3.606 15 O -0.603 6.603 16 N -0.513 5.513 17 C -0.344 4.344 18 H 0.100 0.900 19 C -0.006 4.006 20 N -0.898 5.898 21 Si 1.011 2.989 22 H -0.265 1.265 23 H -0.268 1.268 24 H -0.263 1.263 25 H 0.058 0.942 26 H 0.089 0.911 27 H 0.029 0.971 28 H 0.033 0.967 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.034 0.966 34 H 0.113 0.887 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.399 0.601 39 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.289 -1.502 19.359 19.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.032 3.968 3 H 0.084 0.916 4 C -0.024 4.024 5 H 0.089 0.911 6 N -0.268 5.268 7 C -0.124 4.124 8 C -0.131 4.131 9 C -0.152 4.152 10 C -0.023 4.023 11 N -0.323 5.323 12 C 0.313 3.687 13 O -0.447 6.447 14 C 0.179 3.821 15 O -0.493 6.493 16 N -0.147 5.147 17 C -0.473 4.473 18 H 0.118 0.882 19 C -0.210 4.210 20 N -0.536 5.536 21 Si 0.832 3.168 22 H -0.190 1.190 23 H -0.192 1.192 24 H -0.187 1.187 25 H 0.077 0.923 26 H 0.108 0.892 27 H 0.048 0.952 28 H 0.052 0.948 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.101 0.899 33 H 0.053 0.947 34 H 0.131 0.869 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.233 0.767 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.156 -1.627 18.954 19.024 hybrid contribution 0.611 0.583 -0.726 1.114 sum 0.455 -1.043 18.228 18.263 Atomic orbital electron populations 1.21884 0.93653 1.02768 1.01092 1.21737 0.96016 0.95306 0.83788 0.91565 1.22564 0.93197 0.96181 0.90433 0.91089 1.61972 1.43591 1.08517 1.12721 1.22458 1.00164 0.95724 0.94046 1.22572 1.01398 0.89671 0.99465 1.22906 1.02884 0.95991 0.93372 1.22593 0.94508 0.89017 0.96171 1.48251 1.49666 1.30727 1.03640 1.19876 0.80917 0.84319 0.83593 1.90656 1.39930 1.29940 1.84141 1.19482 0.89410 0.89122 0.84069 1.90495 1.44107 1.31525 1.83141 1.41646 1.41681 1.27053 1.04353 1.19979 1.30072 1.11868 0.85423 0.88191 1.26556 0.95973 0.97524 1.00940 1.69563 1.34881 1.26307 1.22873 0.84683 0.78836 0.77584 0.75731 1.18966 1.19200 1.18662 0.92303 0.89237 0.95205 0.94792 0.90263 0.90695 0.91575 0.89883 0.94736 0.86903 0.89873 0.89988 0.91138 0.76674 0.90167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.00 8.27 71.98 0.60 -3.40 16 2 C 0.13 3.93 2.88 45.34 0.13 4.06 16 3 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 4 C 0.09 1.79 2.53 46.10 0.12 1.91 16 5 H 0.07 1.34 8.13 -2.39 -0.02 1.32 16 6 N -0.54 -9.53 3.75 -916.24 -3.43 -12.96 16 7 C 0.02 0.30 9.22 127.69 1.18 1.48 16 8 C 0.02 0.24 8.79 127.69 1.12 1.37 16 9 C -0.11 -2.42 5.06 31.91 0.16 -2.26 16 10 C 0.10 3.13 6.04 86.78 0.52 3.65 16 11 N -0.59 -21.86 3.08 -790.76 -2.44 -24.30 16 12 C 0.53 24.70 7.66 87.08 0.67 25.36 16 13 O -0.57 -28.46 15.27 -3.52 -0.05 -28.51 16 14 C 0.39 20.87 7.78 87.08 0.68 21.55 16 15 O -0.60 -32.71 13.33 -3.72 -0.05 -32.76 16 16 N -0.51 -28.95 5.25 -308.88 -1.62 -30.57 16 17 C -0.34 -19.61 9.67 84.35 0.82 -18.79 16 18 H 0.10 5.81 7.15 -2.91 -0.02 5.79 16 19 C -0.01 -0.32 5.51 85.14 0.47 0.15 16 20 N -0.90 -49.21 13.03 21.76 0.28 -48.93 16 21 Si 1.01 41.22 29.56 68.60 2.03 43.24 16 22 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 23 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 24 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 25 H 0.06 1.74 8.02 -2.38 -0.02 1.72 16 26 H 0.09 2.14 5.49 -2.39 -0.01 2.13 16 27 H 0.03 1.07 6.51 -2.39 -0.02 1.06 16 28 H 0.03 0.38 8.14 -2.38 -0.02 0.36 16 29 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.07 0.94 6.76 -2.39 -0.02 0.92 16 31 H 0.07 1.09 5.74 -2.39 -0.01 1.07 16 32 H 0.08 1.00 8.14 -2.38 -0.02 0.99 16 33 H 0.03 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.11 1.72 8.12 -2.39 -0.02 1.70 16 35 H 0.08 1.85 7.91 -2.39 -0.02 1.83 16 36 H 0.08 3.06 6.17 -2.39 -0.01 3.04 16 37 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.40 22.93 7.35 -92.71 -0.68 22.25 16 39 H 0.29 14.44 8.30 -92.70 -0.77 13.67 16 Total: -1.00 -67.17 312.50 1.56 -65.61 By element: Atomic # 1 Polarization: 33.73 SS G_CDS: 0.38 Total: 34.11 kcal Atomic # 6 Polarization: 28.61 SS G_CDS: 6.46 Total: 35.07 kcal Atomic # 7 Polarization: -109.56 SS G_CDS: -7.21 Total: -116.76 kcal Atomic # 8 Polarization: -61.17 SS G_CDS: -0.10 Total: -61.28 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.24 kcal Total: -67.17 1.56 -65.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310575013.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.014 kcal (2) G-P(sol) polarization free energy of solvation -67.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds